These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence [TCTCTTGACCTCACGAATCCCCTTTGCCGCGAGCAACCCGCGACCTCCCTCCCTCCGCGGCCACACGAGGATTCTACCTTTTCTTCCGCAGCTGTCTATCTACCGCCATGGAGCACTGAAGCCCCAAGCATCCAAATCACATTGAAATCCTTCCATTTAGATCACCTGTAGATATTTGCATCATCTGGACTCAAGACTCCATTCCATTTTGCAGTGGCCTTTTGCTTTCAACTCAATCTCAAGAGTGTAATTAACTTGGAAATAAAGACAGGTGACTTATTGTGAAACCAGCANGTGGAGGAAGTGGCTGCCGCTTGTTTCCAATACAGCAGAGAGAGAGAGCAGAAGAGCCCNCAATCAAATCCAGCTGACGCGGGTCCATCAATTAATAACAGAAAGAAGAAGAGGATCCGGTGCACCCAACCACCTCCCCTTCCCCTCCTTGTTATATAACCCGACCGACNCTGGCGCCAGCATGTATCATCATCACCCCCACCGAGCAGCAGCCACATCTTCGCCGCGCACGCCACGCCCAGGAATCTGTCTGCAGATACGCGCAGACACCGCATGCCGCGCGGTCCGAACGAAATCTGTGGCACGCNAGCAGGAACTTACTGCGCTAACACCGCCGATACGATCCTTACCCGTGGTAAAAACCCCCCGGAAGGCTTCAGTTTTCTCCCACTAAGGATTATGTCCTTAAGCCCCCACCCCAGAGCGTTACGGCCCCTCCCCCAGAGCGGCGGGGATTAATTATATTATGCCTGAAAGAACCGTTG] [+] EMBL AW154962 [TCTCTTGACCTCACGAATCCCCTTTGCCGCGAGCAACCCGCGACCTCCCTCCCTCCGCGGCCACACGAGGATTCTACCTTTTCTTCCGCAGCTGTCTATCTACCGCCATGGAGCACTGAAGCCCCAAGCATCCAAATCACATTGAAATCCTTCCATTTAGATCACCTGTAGATATTTGCATCATCTGGACTCAAGACTCCATTCCATTTTGCAGTGGCCTTTTGCTTTCAACTCAATCTCAAGAGTGTAATTAACTTGGAAATAAAGACAGGTGACTTATTGTGAAACCAGCANGTGGAGGAAGTGGCTGCCGCTTGTTTCCAATACAGCAGAGAGAGAGAGCAGAAGAGCCCNCAATCAAATCCAGCTGACGCGGGTCCATCAATTAATAACAGAAAGAAGAAGAGGATCCGGTGCACCCAACCACCTCCCCTTCCCCTCCTTGTTATATAACCCGACCGACNCTGGCGCCAGCATGTATCATCATCACCCCCACCGAGCAGCAGCCACATCTTCGCCGCGCACGCCACGCCCAGGAATCTGTCTGCAGATACGCGCAGACACCGCATGCCGCGCGGTCCGAACGAAATCTGTGGCACGCNAGCAGGAACTTACTGCGCTAACACCGCCGATACGATCCTTACCCGTGGTAAAAACCCCCCGGAAGGCTTCAGTTTTCTCCCACTAAGGATTATGTCCTTAAGCCCCCACCCCAGAGCGTTACGGCCCCTCCCCCAGAGCGGCGGGGATTAATTATATTATGCCTGAAAGAACCGTTG] consensusID : consensus_2206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [GATACATATTTTTATCTTAATTTTAATTCGAGTACTCCTAGCTGCTAGACAGTATATTTCGTAAAAAACTTTCTATATATAAGTTACTTTAAAATATCAACTAAATCAAAATTTCAAGTATAAAATAATTAAAACATAATTAATTGTATGCTAATATATTTTTTTCGTGTCCACACCCCATCTTTATATGCTATTTTCTCGAACGGGGCCTTAATAAGAAACTTAGAAACTTGCTCTTCCTATTTCTGCTAAAATTTGTACTGTTTGTTCCTTTGAGAAATCCATTACTATTTCATTTCTGTAGAACATCCAGACAAGAGGTTACTGAAATGTAGCATAACGAATCTTCAATCCGTTTGTATATGTGCAGTGAAACCAGCAGGTGGAGGAGGTGGCTGCCGCTTGTTTCCAATACAGCAGAGAGAGAGAGAGAGCAGAAGAGCCCCCAATCAAATCCAGCTGACGCGGTGTCCATCAATTAATAACAGAAAGAAGAAGAGGATCCGGTTGCCACCCAACCACCTCCCCCCTCCCCCCCCTTGTCTCGTC] [-] EMBL CA764940 [GATACATATTTTTATCTTAATTTTAATTCGAGTACTCCTAGCTGCTAGACAGTATATTTCGTAAAAAACTTTCTATATATAAGTTACTTTAAAATATCAACTAAATCAAAATTTCAAGTATAAAATAATTAAAACATAATTAATTGTATGCTAATATATTTTTTTCGTGTCCACACCCCATCTTTATATGCTATTTTCTCGAACGGGGCCTTAATAAGAAACTTAGAAACTTGCTCTTCCTATTTCTGCTAAAATTTGTACTGTTTGTTCCTTTGAGAAATCCATTACTATTTCATTTCTGTAGAACATCCAGACAAGAGGTTACTGAAATGTAGCATAACGAATCTTCAATCCGTTTGTATATGTGCAGTGAAACCAGCAGGTGGAGGAGGTGGCTGCCGCTTGTTTCCAATACAGCAGAGAGAGAGAGAGAGCAGAAGAGCCCCCAATCAAATCCAGCTGACGCGGTGTCCATCAATTAATAACAGAAAGAAGAAGAGGATCCGGTTGCCACCCAACCACCTCCCCCCTCCCCCCCCTTGTCTCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2206#0 ------------------------------------------------------------ consensus_2206#1 GATACATATTTTTATCTTAATTTTAATTCGAGTACTCCTAGCTGCTAGACAGTATATTTC 60 consensus_2206#0 -------TCTCTTGACCTCACGAATCCCCTTTG--CCGCGAGCAACCCGCGACCTCCCTC 51 consensus_2206#1 GTAAAAAACTTTCTATAT-ATAAGTTACTTTAAAATATCAACTAAATCAAAATTTCAAGT 119 ** * * * * * * * ** * * ** * * ** consensus_2206#0 CCTCCGCGGCCACACGAGGATT---------CTACCTTTTCTTCCGCAGCTGTCTATCTA 102 consensus_2206#1 ATAAAATAATTAAAACATAATTAATTGTATGCTAATATATTTTTTTCG--TGTCCACACC 177 * * * *** *** * * ** * **** * consensus_2206#0 CCGCCATGGAGCACTGAAGCCCCAAGCA---TCCAAATCACA---TTGAAATCCTTCCAT 156 consensus_2206#1 CCATCTTTATATGCTATTTTCTCGAACGGGGCCTTAATAAGAAACTTAGAAACTTGCTCT 237 ** * * ** * * * * * *** * * ** ** * * * * consensus_2206#0 TTAGATCACCTGTAGATATTTGCATCATCTGGACTC---AAGACTCCATTCCATTTTGCA 213 consensus_2206#1 TCCTATT-TCTGCTAAAATTTGTACTGTTTGTTCCTTTGAGAAATCCATTAC-TATTTCA 295 * ** *** * ***** * * ** * * * ****** * * ** ** consensus_2206#0 GTGGCCTTTTGCTTTCAACTCAA---TCTCAAGAGTGTAATTAACTTGGAAATAAAGACA 270 consensus_2206#1 TTTCTGTAGAACATCCAGACAAGAGGTTACTGAAATGTAGCATAACGAATCTTCAATCCG 355 * * * * ** * * * * **** * * ** * consensus_2206#0 GGTG---ACTTATTGTGAAACCAGCANGTGGAGGAAGTGGCTGCCGCTTGTTTCCAATAC 327 consensus_2206#1 TTTGTATATGTGCAGTGAAACCAGCAGGTGGAGGAGGTGGCTGCCGCTTGTTTCCAATAC 415 ** * * ************ ******** ************************ consensus_2206#0 AGCAGAGAGAGAGAG----CAGAAGAGCCCNCAATCAAATCCAGCTGACGCGG-GTCCAT 382 consensus_2206#1 AGCAGAGAGAGAGAGAGAGCAGAAGAGCCCCCAATCAAATCCAGCTGACGCGGTGTCCAT 475 *************** *********** ********************** ****** consensus_2206#0 CAATTAATAACAGAAAGAAGAAGAGGATCCGGTG--CACCCAACCACCTCCCCTTCCCCT 440 consensus_2206#1 CAATTAATAACAGAAAGAAGAAGAGGATCCGGTTGCCACCCAACCACCTCCCCCCTCCCC 535 ********************************* ***************** *** consensus_2206#0 CCTTGTTATATAACCCGACCGACNCTGGCGCCAGCATGTATCATCATCACCCCCACCGAG 500 consensus_2206#1 CCCC-TTGTCTCGTC--------------------------------------------- 549 ** ** * * * consensus_2206#0 CAGCAGCCACATCTTCGCCGCGCACGCCACGCCCAGGAATCTGTCTGCAGATACGCGCAG 560 consensus_2206#1 ------------------------------------------------------------ consensus_2206#0 ACACCGCATGCCGCGCGGTCCGAACGAAATCTGTGGCACGCNAGCAGGAACTTACTGCGC 620 consensus_2206#1 ------------------------------------------------------------ consensus_2206#0 TAACACCGCCGATACGATCCTTACCCGTGGTAAAAACCCCCCGGAAGGCTTCAGTTTTCT 680 consensus_2206#1 ------------------------------------------------------------ consensus_2206#0 CCCACTAAGGATTATGTCCTTAAGCCCCCACCCCAGAGCGTTACGGCCCCTCCCCCAGAG 740 consensus_2206#1 ------------------------------------------------------------ consensus_2206#0 CGGCGGGGATTAATTATATTATGCCTGAAAGAACCGTTG 779 consensus_2206#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||