These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1932 fasta sequence [CAAAAATCGAAAGAAAAGCGAAATTAAATATGGCACACGAGGGTGACAGCCGTGCACTGTCCAGGCGCGTACACGTCGCTCGCGTACGTACTTTGTGTGCAGTAGCAGTTGGTACTCCTGCACAGTGTACGCGCGCGCGACATCTGTACACTACGTACACGTTTACGTATACGTGTATATGCTTGTCGTCCACGTAGGCAACCTCCGCTACTCGGTCTCTAAGAGCTTACAATAGCAGTCTATAAACCAGCTATAAACATATTTTAAAGAGATAAAAAGAAGAGAGAAAAGCAGCGGGCTATAAATCTGTAGCCAGCTGTAACACGGACTCCAAGACGTAATATGTGTATGACATGTGAGATCAGGCATTAATAGTATTGTAAGCAACTATTGTATGAATTGGCTATTATATTGGCTATAGATGATTTGAAGCTAACAGTTGGCTATACTATTAAACTTGCTCTAACGCAGAGCTGATCACCGATCAGAGTGTAGTACAGCGAAATAAGCGTCGCCAGACTTTACCCTAAATTCAGGACTATATGTTTCTGTTTTCTCGCGCACGCTTAACAAACTGCTAAACAATAATTTTTAAAAAAATTATAAGAAAGTTGTTTTAGGAAAATGTATTAATCCATTTTTCAATTTTTTTATAACTAATAGTTAAGTATGCATTAATCTCTGTTTTATGTGTGAAGGGAGCGGTTCCCCAACTGCTCCAGAAGAAGAACATAGCTTAATTAAATTTCCTACGGTGAAATCAGTCTATACAGATTTAAGTTCTAAAATTGATACAAATATTAATATTTACTACTAATTGTTTTTTCAGTATTAGACAACGAGATGTCTATGGAGACATCATAGTAGTATCCAGCAGCCTATGTGGCGTTGCATTGGGAAGCCTAGCGCGGTGAGTCACCCTCCACCGTGGCATGGCCCCACCTGTCAGTTTGTAACTGCCAACCAAGTCACTGAAAAATTAGATGGACGATTTTGTCTCCGTAAAACAGAGTGAAATTAGGAGGACCACTGGATCCGCTATGCCAGGGATGTACTCATGATCTGGGCCATCCACGTGTCTGATTAAATACTTGACCCTGACATGACATACACGCATACTTAATGCATTAGCTTAATTAGCTAGCAACAATTGGTTTGGGATCATGGCAATGCAAAGCTTCTACTACTAGCTAGCTAGGCATGATCATGCAAGAGGCAGCCTGATGACTCTGATGTATGTTAACAACTGCAAGCAAGAGGGGTTATTTCACTAGTCTTGTCTTCACATGTTAACTGCATGAGTAGCTGCTTAGTTTGGAGAGGCAGTGTCCTAATCCAGCAAAGGGCAGGGCAGGGTCAGACCAGAAATGCTGCCTCATGGTAAGTGGGAACATTAGCTTTCTCACTGGAATATGATGCCATTGCTTGAAACAACTGTGCTCACTGTAGTGTAACAAAATCTTGTTCCTGCTATCTTTGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGACGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAAAGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGAGGAATGCTACCTTCTGTCTCCACTTGATCATGGAGGAGACCAAGACCAGCCAACCAAATCACCAATTAGTTAACTGCATTTGCTACTAATTGCTAGTGCTAAACAAAGGTTTGGTTAAACGGTAGCCACCAGTAAACAAATCAGTATGCAAAAGAGGAATGGGGTTTTAATATTACCAAAGTCAGCAGGAGCGAGCCAGTAACATCCTAGCTGGACCAGCTTCCTGGGAA] [+] EMBL AK064207 [CAAAAATCGAAAGAAAAGCGAAATTAAATATGGCACACGAGGGTGACAGCCGTGCACTGTCCAGGCGCGTACACGTCGCTCGCGTACGTACTTTGTGTGCAGTAGCAGTTGGTACTCCTGCACAGTGTACGCGCGCGCGACATCTGTACACTACGTACACGTTTACGTATACGTGTATATGCTTGTCGTCCACGTAGGCAACCTCCGCTACTCGGTCTCTAAGAGCTTACAATAGCAGTCTATAAACCAGCTATAAACATATTTTAAAGAGATAAAAAGAAGAGAGAAAAGCAGCGGGCTATAAATCTGTAGCCAGCTGTAACACGGACTCCAAGACGTAATATGTGTATGACATGTGAGATCAGGCATTAATAGTATTGTAAGCAACTATTGTATGAATTGGCTATTATATTGGCTATAGATGATTTGAAGCTAACAGTTGGCTATACTATTAAACTTGCTCTAACGCAGAGCTGATCACCGATCAGAGTGTAGTACAGCGAAATAAGCGTCGCCAGACTTTACCCTAAATTCAGGACTATATGTTTCTGTTTTCTCGCGCACGCTTAACAAACTGCTAAACAATAATTTTTAAAAAAATTATAAGAAAGTTGTTTTAGGAAAATGTATTAATCCATTTTTCAATTTTTTTATAACTAATAGTTAAGTATGCATTAATCTCTGTTTTATGTGTGAAGGGAGCGGTTCCCCAACTGCTCCAGAAGAAGAACATAGCTTAATTAAATTTCCTACGGTGAAATCAGTCTATACAGATTTAAGTTCTAAAATTGATACAAATATTAATATTTACTACTAATTGTTTTTTCAGTATTAGACAACGAGATGTCTATGGAGACATCATAGTAGTATCCAGCAGCCTATGTGGCGTTGCATTGGGAAGCCTAGCGCGGTGAGTCACCCTCCACCGTGGCATGGCCCCACCTGTCAGTTTGTAACTGCCAACCAAGTCACTGAAAAATTAGATGGACGATTTTGTCTCCGTAAAACAGAGTGAAATTAGGAGGACCACTGGATCCGCTATGCCAGGGATGTACTCATGATCTGGGCCATCCACGTGTCTGATTAAATACTTGACCCTGACATGACATACACGCATACTTAATGCATTAGCTTAATTAGCTAGCAACAATTGGTTTGGGATCATGGCAATGCAAAGCTTCTACTACTAGCTAGCTAGGCATGATCATGCAAGAGGCAGCCTGATGACTCTGATGTATGTTAACAACTGCAAGCAAGAGGGGTTATTTCACTAGTCTTGTCTTCACATGTTAACTGCATGAGTAGCTGCTTAGTTTGGAGAGGCAGTGTCCTAATCCAGCAAAGGGCAGGGCAGGGTCAGACCAGAAATGCTGCCTCATGGTAAGTGGGAACATTAGCTTTCTCACTGGAATATGATGCCATTGCTTGAAACAACTGTGCTCACTGTAGTGTAACAAAATCTTGTTCCTGCTATCTTTGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGACGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAAAGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGAGGAATGCTACCTTCTGTCTCCACTTGATCATGGAGGAGACCAAGACCAGCCAACCAAATCACCAATTAGTTAACTGCATTTGCTACTAATTGCTAGTGCTAAACAAAGGTTTGGTTAAACGGTAGCCACCAGTAAACAAATCAGTATGCAAAAGAGGAATGGGGTTTTAATATTACCAAAGTCAGCAGGAGCGAGCCAGTAACATCCTAGCTGGACCAGCTTCCTGGGAA] consensusID : consensus_221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [TGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAA] [+] EMBL CA764133 [TGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_221#0 CAAAAATCGAAAGAAAAGCGAAATTAAATATGGCACACGAGGGTGACAGCCGTGCACTGT 60 consensus_221#1 ------------------------------------------------------------ consensus_221#0 CCAGGCGCGTACACGTCGCTCGCGTACGTACTTTGTGTGCAGTAGCAGTTGGTACTCCTG 120 consensus_221#1 ------------------------------------------------------------ consensus_221#0 CACAGTGTACGCGCGCGCGACATCTGTACACTACGTACACGTTTACGTATACGTGTATAT 180 consensus_221#1 ------------------------------------------------------------ consensus_221#0 GCTTGTCGTCCACGTAGGCAACCTCCGCTACTCGGTCTCTAAGAGCTTACAATAGCAGTC 240 consensus_221#1 ------------------------------------------------------------ consensus_221#0 TATAAACCAGCTATAAACATATTTTAAAGAGATAAAAAGAAGAGAGAAAAGCAGCGGGCT 300 consensus_221#1 ------------------------------------------------------------ consensus_221#0 ATAAATCTGTAGCCAGCTGTAACACGGACTCCAAGACGTAATATGTGTATGACATGTGAG 360 consensus_221#1 ------------------------------------------------------------ consensus_221#0 ATCAGGCATTAATAGTATTGTAAGCAACTATTGTATGAATTGGCTATTATATTGGCTATA 420 consensus_221#1 ------------------------------------------------------------ consensus_221#0 GATGATTTGAAGCTAACAGTTGGCTATACTATTAAACTTGCTCTAACGCAGAGCTGATCA 480 consensus_221#1 ------------------------------------------------------------ consensus_221#0 CCGATCAGAGTGTAGTACAGCGAAATAAGCGTCGCCAGACTTTACCCTAAATTCAGGACT 540 consensus_221#1 ------------------------------------------------------------ consensus_221#0 ATATGTTTCTGTTTTCTCGCGCACGCTTAACAAACTGCTAAACAATAATTTTTAAAAAAA 600 consensus_221#1 ------------------------------------------------------------ consensus_221#0 TTATAAGAAAGTTGTTTTAGGAAAATGTATTAATCCATTTTTCAATTTTTTTATAACTAA 660 consensus_221#1 ------------------------------------------------------------ consensus_221#0 TAGTTAAGTATGCATTAATCTCTGTTTTATGTGTGAAGGGAGCGGTTCCCCAACTGCTCC 720 consensus_221#1 ------------------------------------------------------------ consensus_221#0 AGAAGAAGAACATAGCTTAATTAAATTTCCTACGGTGAAATCAGTCTATACAGATTTAAG 780 consensus_221#1 ------------------------------------------------------------ consensus_221#0 TTCTAAAATTGATACAAATATTAATATTTACTACTAATTGTTTTTTCAGTATTAGACAAC 840 consensus_221#1 ------------------------------------------------------------ consensus_221#0 GAGATGTCTATGGAGACATCATAGTAGTATCCAGCAGCCTATGTGGCGTTGCATTGGGAA 900 consensus_221#1 ------------------------------------------------------------ consensus_221#0 GCCTAGCGCGGTGAGTCACCCTCCACCGTGGCATGGCCCCACCTGTCAGTTTGTAACTGC 960 consensus_221#1 ------------------------------------------------------------ consensus_221#0 CAACCAAGTCACTGAAAAATTAGATGGACGATTTTGTCTCCGTAAAACAGAGTGAAATTA 1020 consensus_221#1 ------------------------------------------------------------ consensus_221#0 GGAGGACCACTGGATCCGCTATGCCAGGGATGTACTCATGATCTGGGCCATCCACGTGTC 1080 consensus_221#1 ------------------------------------------------------------ consensus_221#0 TGATTAAATACTTGACCCTGACATGACATACACGCATACTTAATGCATTAGCTTAATTAG 1140 consensus_221#1 ------------------------------------------------------------ consensus_221#0 CTAGCAACAATTGGTTTGGGATCATGGCAATGCAAAGCTTCTACTACTAGCTAGCTAGGC 1200 consensus_221#1 -----------------------------------------TGGGAGAAGAGAAGAAGAT 19 * * ** * ** consensus_221#0 ATGATCATGCAAGAGGC---AGCCTGATGACTCTGATGTATGTTAACAACTGCAAGCAAG 1257 consensus_221#1 GAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATC-----GGAAA 74 *** * *** ** **** **** ** * ** * * * ** consensus_221#0 AGGGGTTATTTCACTAGTCTTGTCTTCACATGTTAACTGCATGAGTAGCTGCTTAGTTTG 1317 consensus_221#1 AATGCTTACTGTACCAGCCTAA---TGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAG 131 * * *** * ** ** ** * * * * ** * ** ** ** * * * consensus_221#0 GAGAGGCAGTGTCCTAATCCA-GCAAAGGGCAGGGCAGGGTCAGACCAGAAATGCTGCCT 1376 consensus_221#1 AAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGA------ 185 ***** * * ** * * *** *** * ** * * *** consensus_221#0 CATGGTAAGTGGGAACATTAGCTTTCTCACTGGAATATGATGCCATTGCTTGAAACAACT 1436 consensus_221#1 ---AAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAA----------GCAGGGGAGAAGA 232 * * ** ** * * ** * * * ** * * ** consensus_221#0 GTGCTCACTGTAGTGTAACAAAATCTTGTTCCTGCTATCTTTGATAATGGTACCCGTGTT 1496 consensus_221#1 GAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACA-----TGATAATGGTACCCGTGTT 287 * ** ** * ** ** * * ******************* consensus_221#0 TATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGACGAAGTTGAAGAAGAAGATGATG 1556 consensus_221#1 TATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATG 347 ************************************* ********************** consensus_221#0 AACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGA 1616 consensus_221#1 AACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGA 407 ************************************************************ consensus_221#0 AAAGAAAAGAAAAGAAAGGTAGCCAAAGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGA 1676 consensus_221#1 AAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGA 467 ************************** ********************************* consensus_221#0 TGAGCTGAGATGCTGCAGCCACATGAGGAATGCTACCTTCTGTCTCCACTTGATCATGGA 1736 consensus_221#1 TGAGCTGAGATGCTGCAGCCACATGAT-AATGGTACC-----------CGTGTTTATCGG 515 ************************** **** **** * ** * ** * consensus_221#0 GGAGACCAAGACCAGCCAACCAAATCACCAATTAGTTAACTGCATTTGCTACTAATTGCT 1796 consensus_221#1 AAAAAT---GCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAAC 572 * * * * **** * * ** * ** * * * ** consensus_221#0 AGTGCTAAACAAAGGTTTGGTTAAACGGTAGCCACCAGTAAACAAATCAGTATGCAAAAG 1856 consensus_221#1 AAGAAGAGGAAAAGATCTTTCCAAA--GCAGCCAGCAAAAAAA----------------- 613 * * **** * * *** * ***** ** *** consensus_221#0 AGGAATGGGGTTTTAATATTACCAAAGTCAGCAGGAGCGAGCCAGTAACATCCTAGCTGG 1916 consensus_221#1 ------------------------------------------------------------ consensus_221#0 ACCAGCTTCCTGGGAA 1932 consensus_221#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||