These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [CAACGGCTTCGATAAGGNTAACACCTTCGTGGCCTCGCCGGCAAGAGGATGTACTCCTCCACNTNTCCATCGGAGTGCACGTCGGCGTTCCTGTACGACTACTTCCACAAGCACCCCTTCTTCGACTATTTNCCACAAGAAACCCCAAGGACCTGAACCCAAGCCGGACCCCAAGCCGACGCCATTGCCGGCGAACGGTGGTGGTGGCGGTGCAGGAAACGGTGATGGCGGCNCCGAGGGGAACANTGGCGGAGTGCGCCGTCTCCCAGCTCTCCGCCTGTCTACCACTGAAAAATTCATCCATTCCATCAACCCACACATGGTCTGTTTGATTGCATGCATGGTTAATTTTATCGTTCGGTTCTTGCGTGATTAATTAATTTCCAGGTCAGCTTGTTCGTGCAGAATTAATAAAAGTTGTGATGTGAGGAGTGTGAGTGTGTGAGAACGATCGATTTATGTGTTGGAGACTTCNGTGCACAAGCGTGTTGGTTTTCAGGNGAAATAATACGTGTTCCAGNGCGNTNTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030269 [CAACGGCTTCGATAAGGNTAACACCTTCGTGGCCTCGCCGGCAAGAGGATGTACTCCTCCACNTNTCCATCGGAGTGCACGTCGGCGTTCCTGTACGACTACTTCCACAAGCACCCCTTCTTCGACTATTTNCCACAAGAAACCCCAAGGACCTGAACCCAAGCCGGACCCCAAGCCGACGCCATTGCCGGCGAACGGTGGTGGTGGCGGTGCAGGAAACGGTGATGGCGGCNCCGAGGGGAACANTGGCGGAGTGCGCCGTCTCCCAGCTCTCCGCCTGTCTACCACTGAAAAATTCATCCATTCCATCAACCCACACATGGTCTGTTTGATTGCATGCATGGTTAATTTTATCGTTCGGTTCTTGCGTGATTAATTAATTTCCAGGTCAGCTTGTTCGTGCAGAATTAATAAAAGTTGTGATGTGAGGAGTGTGAGTGTGTGAGAACGATCGATTTATGTGTTGGAGACTTCNGTGCACAAGCGTGTTGGTTTTCAGGNGAAATAATACGTGTTCCAGNGCGNTNTAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_2212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence [ATGTGTTGGAGACTTCAGTGCACAAGCGTGTTGGTTTTCAGGAGANATAATACGTGTTCCAGAGCGCTCTATATATGTNTGTCGTGTCTCTATTTATTTGCATATATATGTNATTCGGTAATGTAATTTATATATTTATAAGATATGGAAAATTGTTCCTATTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094658 [ATGTGTTGGAGACTTCAGTGCACAAGCGTGTTGGTTTTCAGGAGANATAATACGTGTTCCAGAGCGCTCTATATATGTNTGTCGTGTCTCTATTTATTTGCATATATATGTNATTCGGTAATGTAATTTATATATTTATAAGATATGGAAAATTGTTCCTATTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2212#0 CAACGGCTTCGATAAGGNTAACACCTTCGTGGCCTCGCCGGCAAGAGGATGTACTCCTCC 60 consensus_2212#1 ------------------------------------------------------------ consensus_2212#0 ACNTNTCCATCGGAGTGCACGTCGGCGTTCCTGTACGACTACTTCCACAAGCACCCCTTC 120 consensus_2212#1 ------------------------------------------------------------ consensus_2212#0 TTCGACTATTTNCCACAAGAAACCCCAAGGACCTGAACCCAAGCCGGACCCCAAGCCGAC 180 consensus_2212#1 ------------------------------------------------------------ consensus_2212#0 GCCATTGCCGGCGAACGGTGGTGGTGGCGGTGCAGGAAACGGTGATGGCGGCNCCGAGGG 240 consensus_2212#1 ------------------------------------------------------------ consensus_2212#0 GAACANTGGCGGAGTGCGCCGTCTCCCAGCTCTCCGCCTGTCTACCACTGAAAAATTCAT 300 consensus_2212#1 ------------------------------------------------------------ consensus_2212#0 CCATTCCATCAACCCACACATGGTCTGTTTGATTGCATGCATGGTTAATTTTATCGTTCG 360 consensus_2212#1 ------------------------------------ATGTGTTGGAGACTTCAGTGCACA 24 *** * * * ** * * * consensus_2212#0 GTTCTTGCGTGATTAATTAATTTCCAGGTCAGCTTGTTCGTGCAGAATTAATAAAAGTTG 420 consensus_2212#1 A-----GCGTG-----TTGGTTTTCAGGAGANATAATACGTGT----TCCAGAGCGCTCT 70 ***** ** *** **** * * * **** * * * * consensus_2212#0 TGATGTGAGGAGTGTGAGTGTGTGAGAACGATCGATTTATGTG-TTGGAGACTTCNGTGC 479 consensus_2212#1 ATATATGTNTGTCGTGTCTCTATTTATTTGCAT-ATATATGTNATTCGGTAATGTAATTT 129 ** ** *** * * * * ** ***** ** * * * * consensus_2212#0 ACAAGCGTGTTGGTTTTCAGGNGAAATAATACGTGTT-CCAGNGCGNTNTAAAAAAAAAA 538 consensus_2212#1 ATATATTTATAAGATAT---GGAAAATTGTTCCTATTGCCAAAAAAAAAAAAAAAAAAAA 186 * * * * * * * * **** * * * ** *** ********** consensus_2212#0 AAAAAAAAAA---- 548 consensus_2212#1 AAAAAAAAAAAAAA 200 ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||