These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1881 fasta sequence [GAGAGGAGACAAACCCCTCTCCACCTCCCCCCAAAACCCTAACCCCTCCTCCTCCCACCTCCCGCCACGCCACCATGGCCTCGCCCCCGCCGCCGCCGCCCTCCGCCGCCGCCCCCGGATCGCCGCCGTCGGCGCAAGTGGTGGGGAACGCGTTCGTGCACCAGTACTACAACATCCTGCACCAGTCGCCGGATCTCGTCCACCGCTTCTACCAGGACGGGAGCCGCATCGGCCGCCCCGCCTCCCCCGCCGCCGCCGAGATGGACACCGTCACCACCATGGAGGCGATTAACGCGAAGATCGTGTCCATGGACATCGTGCGGGCGGAGATCAAGGCGGTGGACGCGCAGGAGTCGCTGGGCGGGGGCGTCACGGTGCTCGTCACGGGCCACCTCACCGGGAGCGACGACGTGCGCAGGGAGTTCTCGCAGTCCTTCTTCCTCGCGCCGCAGGAGAAGGGATACTTCGTGCTCAACGACATCCTGCGCTACGTCGGGGGGGAGGGGGATCAGGAGGTGGAGCCGGAGCCGGAGCTGGAGCTGTCGTTTCCGCCGTCGCAGCAGCCGGATTCGGTGCCTGCTCCTTCGGCGAATGGCACTAGCGTGCCGCGGGAACAGGAGGCCTTCTCGCAGCCGGAGCAGCATGTGGCTGATCCTGCACCCAATGCTCAGGAGGCTGATCTCAACGGCGAGGAGGTTTATAACCCACCGAACAACACAGAGGGGCCTGTTGTGGAGGAAACGCCGATTCCTGAAGTTATAGATGAAGTGCCAAATAACGTAGCTGTGGCTATGCCGACTCCGCCTGCCCCTGCCCCTGCCCCTGTACCACAAGAGGAGGCCCCCAAGAAGTCGTATGCTTCAATTGTCAAAGTCATGAAAGAAATTCCACCACAAATATCTGCAATTCCTTCCAGGCCGGCACCACCAAAACAAGAGAAGCAAGTTGCTCCTGCACCTGTTGCTCCGGTTGCTGATGCTCCAACTTTCAGTCCTAATCCTGAAAGCAGCAACATTCAAGAGGCTGAAGTTGATGCACATGCGATATATGTACGGAATCTGCCTTTAAGTGCCACGCCTGAACAATTAGAAGAAGCATTCAAGAAATTTGGCGCTATCAAGCCGGACGGAATCCAAGTTAGAAGTCACAAGATTCAAGGGTTCTGCTATGGGTTTGTAGAGTTTGAAGATCCCAGTTCAGTTCAAAGTGCAATTGCGGGTTCTCCTGTGACGATTAGTGACCGGCAATGTTATGTGGAGGAAAAGAGAACTGCTGGTTCACGTGGTGGTGGCAGAGGAAGGTTTGCTCCTGGTAGAGGTGGTAACTTCCGAGGTGAAGGCATGAGAGGCCGCGGGAATTACACCGGAGGGAGGGGCTATGGAAGGGGTGAGTTCAATTATCGATCCGACTATGGAGGCAGAGGCGCTGGTAGAGGTGGTTCATCACGTGGTGGTGATGTTGGCTACCAGCGGGTTGACCACTCTGCTGGTCGTGCTGCTCGGGCGCCATCGGGCACTAGTGCCGTTGCAAAGTGAGCGAGTTAGTTGCTATGCCTCGGTTGCTATGCGTCGGTGAAAAAGTTTGATATTTTCGTGGGTTGGAATTATCAACATTCGGGAAGAGGGTATGTGTTGAGTTGGGTTTATGTGAGAGATTATCAGCAAAAATCGGGTCATAAATTGAAGCTTCCCTTGTTTTGTGGCAAGGGAGAGCAGTGGTGATATTGGTTTACTAATTGTAGCATATACGTCTATTCAGAATTTCAGATGTAGTCCTGGTAAGCTTGGCCCTTTTTGGAGTACCTGATGTTTGTTTTTCCCCCTCTTTTTGTCCCTCTTTTCTAGCAGGATCGATTCTATTACGAATGAGAGGTGATGAGTT] [+] EMBL AK101615 [GAGAGGAGACAAACCCCTCTCCACCTCCCCCCAAAACCCTAACCCCTCCTCCTCCCACCTCCCGCCACGCCACCATGGCCTCGCCCCCGCCGCCGCCGCCCTCCGCCGCCGCCCCCGGATCGCCGCCGTCGGCGCAAGTGGTGGGGAACGCGTTCGTGCACCAGTACTACAACATCCTGCACCAGTCGCCGGATCTCGTCCACCGCTTCTACCAGGACGGGAGCCGCATCGGCCGCCCCGCCTCCCCCGCCGCCGCCGAGATGGACACCGTCACCACCATGGAGGCGATTAACGCGAAGATCGTGTCCATGGACATCGTGCGGGCGGAGATCAAGGCGGTGGACGCGCAGGAGTCGCTGGGCGGGGGCGTCACGGTGCTCGTCACGGGCCACCTCACCGGGAGCGACGACGTGCGCAGGGAGTTCTCGCAGTCCTTCTTCCTCGCGCCGCAGGAGAAGGGATACTTCGTGCTCAACGACATCCTGCGCTACGTCGGGGGGGAGGGGGATCAGGAGGTGGAGCCGGAGCCGGAGCTGGAGCTGTCGTTTCCGCCGTCGCAGCAGCCGGATTCGGTGCCTGCTCCTTCGGCGAATGGCACTAGCGTGCCGCGGGAACAGGAGGCCTTCTCGCAGCCGGAGCAGCATGTGGCTGATCCTGCACCCAATGCTCAGGAGGCTGATCTCAACGGCGAGGAGGTTTATAACCCACCGAACAACACAGAGGGGCCTGTTGTGGAGGAAACGCCGATTCCTGAAGTTATAGATGAAGTGCCAAATAACGTAGCTGTGGCTATGCCGACTCCGCCTGCCCCTGCCCCTGCCCCTGTACCACAAGAGGAGGCCCCCAAGAAGTCGTATGCTTCAATTGTCAAAGTCATGAAAGAAATTCCACCACAAATATCTGCAATTCCTTCCAGGCCGGCACCACCAAAACAAGAGAAGCAAGTTGCTCCTGCACCTGTTGCTCCGGTTGCTGATGCTCCAACTTTCAGTCCTAATCCTGAAAGCAGCAACATTCAAGAGGCTGAAGTTGATGCACATGCGATATATGTACGGAATCTGCCTTTAAGTGCCACGCCTGAACAATTAGAAGAAGCATTCAAGAAATTTGGCGCTATCAAGCCGGACGGAATCCAAGTTAGAAGTCACAAGATTCAAGGGTTCTGCTATGGGTTTGTAGAGTTTGAAGATCCCAGTTCAGTTCAAAGTGCAATTGCGGGTTCTCCTGTGACGATTAGTGACCGGCAATGTTATGTGGAGGAAAAGAGAACTGCTGGTTCACGTGGTGGTGGCAGAGGAAGGTTTGCTCCTGGTAGAGGTGGTAACTTCCGAGGTGAAGGCATGAGAGGCCGCGGGAATTACACCGGAGGGAGGGGCTATGGAAGGGGTGAGTTCAATTATCGATCCGACTATGGAGGCAGAGGCGCTGGTAGAGGTGGTTCATCACGTGGTGGTGATGTTGGCTACCAGCGGGTTGACCACTCTGCTGGTCGTGCTGCTCGGGCGCCATCGGGCACTAGTGCCGTTGCAAAGTGAGCGAGTTAGTTGCTATGCCTCGGTTGCTATGCGTCGGTGAAAAAGTTTGATATTTTCGTGGGTTGGAATTATCAACATTCGGGAAGAGGGTATGTGTTGAGTTGGGTTTATGTGAGAGATTATCAGCAAAAATCGGGTCATAAATTGAAGCTTCCCTTGTTTTGTGGCAAGGGAGAGCAGTGGTGATATTGGTTTACTAATTGTAGCATATACGTCTATTCAGAATTTCAGATGTAGTCCTGGTAAGCTTGGCCCTTTTTGGAGTACCTGATGTTTGTTTTTCCCCCTCTTTTTGTCCCTCTTTTCTAGCAGGATCGATTCTATTACGAATGAGAGGTGATGAGTT] consensusID : consensus_2213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [GAATTACCCCGGAGGGAGGGGCTATGGAAGGGTGAGTTCCAATTATCGATCCGACTATGGAGCCAGAGGCGCTGGTAGAGGTGGTTCATCACTGGTGGTGATTTGGCTACCAGCGGGTTGACCACTCTGCTGGTCGTGCTGCTCGGGCGCCATCGGGCACTAGTGCCGTTGCAAAGTGAGCGAGTTAGTTGCTATCCCTCGGTTCCTATGCGTCGGTGAAAAAGTTTGATATTTTCGTGGGTTGGAATTATCAACATTCGGGAAGAGGGTATGTGTTGATTGGGTTTATGTGAGAGATTATCAGCCAAAATCGGGTCATAAATTGAAGCTTCCCTTGTTTTGTGCCAAGGGAGACCCGTGGTGATATTGGTTTACTAATGGTAGCATATACGTCTATTCAGAATTTCAGATGTAGTCCTGGTAAGCTTGGCCCTTTTTGGAGTACCTGATGTTTGTTTTTCCCCCTAAAAAAAAAA] [+] EMBL BI812034 [GAATTACCCCGGAGGGAGGGGCTATGGAAGGGTGAGTTCCAATTATCGATCCGACTATGGAGCCAGAGGCGCTGGTAGAGGTGGTTCATCACTGGTGGTGATTTGGCTACCAGCGGGTTGACCACTCTGCTGGTCGTGCTGCTCGGGCGCCATCGGGCACTAGTGCCGTTGCAAAGTGAGCGAGTTAGTTGCTATCCCTCGGTTCCTATGCGTCGGTGAAAAAGTTTGATATTTTCGTGGGTTGGAATTATCAACATTCGGGAAGAGGGTATGTGTTGATTGGGTTTATGTGAGAGATTATCAGCCAAAATCGGGTCATAAATTGAAGCTTCCCTTGTTTTGTGCCAAGGGAGACCCGTGGTGATATTGGTTTACTAATGGTAGCATATACGTCTATTCAGAATTTCAGATGTAGTCCTGGTAAGCTTGGCCCTTTTTGGAGTACCTGATGTTTGTTTTTCCCCCTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2213#0 GAGAGGAGACAAACCCCTCTCCACCTCCCCCCAAAACCCTAACCCCTCCTCCTCCCACCT 60 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 CCCGCCACGCCACCATGGCCTCGCCCCCGCCGCCGCCGCCCTCCGCCGCCGCCCCCGGAT 120 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 CGCCGCCGTCGGCGCAAGTGGTGGGGAACGCGTTCGTGCACCAGTACTACAACATCCTGC 180 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 ACCAGTCGCCGGATCTCGTCCACCGCTTCTACCAGGACGGGAGCCGCATCGGCCGCCCCG 240 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 CCTCCCCCGCCGCCGCCGAGATGGACACCGTCACCACCATGGAGGCGATTAACGCGAAGA 300 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 TCGTGTCCATGGACATCGTGCGGGCGGAGATCAAGGCGGTGGACGCGCAGGAGTCGCTGG 360 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 GCGGGGGCGTCACGGTGCTCGTCACGGGCCACCTCACCGGGAGCGACGACGTGCGCAGGG 420 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 AGTTCTCGCAGTCCTTCTTCCTCGCGCCGCAGGAGAAGGGATACTTCGTGCTCAACGACA 480 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 TCCTGCGCTACGTCGGGGGGGAGGGGGATCAGGAGGTGGAGCCGGAGCCGGAGCTGGAGC 540 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 TGTCGTTTCCGCCGTCGCAGCAGCCGGATTCGGTGCCTGCTCCTTCGGCGAATGGCACTA 600 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 GCGTGCCGCGGGAACAGGAGGCCTTCTCGCAGCCGGAGCAGCATGTGGCTGATCCTGCAC 660 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 CCAATGCTCAGGAGGCTGATCTCAACGGCGAGGAGGTTTATAACCCACCGAACAACACAG 720 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 AGGGGCCTGTTGTGGAGGAAACGCCGATTCCTGAAGTTATAGATGAAGTGCCAAATAACG 780 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 TAGCTGTGGCTATGCCGACTCCGCCTGCCCCTGCCCCTGCCCCTGTACCACAAGAGGAGG 840 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 CCCCCAAGAAGTCGTATGCTTCAATTGTCAAAGTCATGAAAGAAATTCCACCACAAATAT 900 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 CTGCAATTCCTTCCAGGCCGGCACCACCAAAACAAGAGAAGCAAGTTGCTCCTGCACCTG 960 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 TTGCTCCGGTTGCTGATGCTCCAACTTTCAGTCCTAATCCTGAAAGCAGCAACATTCAAG 1020 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 AGGCTGAAGTTGATGCACATGCGATATATGTACGGAATCTGCCTTTAAGTGCCACGCCTG 1080 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 AACAATTAGAAGAAGCATTCAAGAAATTTGGCGCTATCAAGCCGGACGGAATCCAAGTTA 1140 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 GAAGTCACAAGATTCAAGGGTTCTGCTATGGGTTTGTAGAGTTTGAAGATCCCAGTTCAG 1200 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 TTCAAAGTGCAATTGCGGGTTCTCCTGTGACGATTAGTGACCGGCAATGTTATGTGGAGG 1260 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 AAAAGAGAACTGCTGGTTCACGTGGTGGTGGCAGAGGAAGGTTTGCTCCTGGTAGAGGTG 1320 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 GTAACTTCCGAGGTGAAGGCATGAGAGGCCGCGGGAATTACACCGGAGGGAGGGGCTATG 1380 consensus_2213#1 ----------------------------------GAATTACCCCGGAGGGAGGGGCTATG 26 ******* ****************** consensus_2213#0 GAAGGGGTGAGTTCAATTATCGATCCGACTATGGAGGCAGAGGCGCTGGTAGAGGTGGTT 1440 consensus_2213#1 GAAGGGTGAGTTCCAATTATCGATCCGACTATGGAGCCAGAGGCGCTGGTAGAGGTGGTT 86 ****** * *********************** *********************** consensus_2213#0 CATCACGTGGTGGTGATGTTGGCTACCAGCGGGTTGACCACTCTGCTGGTCGTGCTGCTC 1500 consensus_2213#1 CATCAC-TGGTGGTGAT-TTGGCTACCAGCGGGTTGACCACTCTGCTGGTCGTGCTGCTC 144 ****** ********** ****************************************** consensus_2213#0 GGGCGCCATCGGGCACTAGTGCCGTTGCAAAGTGAGCGAGTTAGTTGCTATGCCTCGGTT 1560 consensus_2213#1 GGGCGCCATCGGGCACTAGTGCCGTTGCAAAGTGAGCGAGTTAGTTGCTATCCCTCGGTT 204 *************************************************** ******** consensus_2213#0 GCTATGCGTCGGTGAAAAAGTTTGATATTTTCGTGGGTTGGAATTATCAACATTCGGGAA 1620 consensus_2213#1 CCTATGCGTCGGTGAAAAAGTTTGATATTTTCGTGGGTTGGAATTATCAACATTCGGGAA 264 *********************************************************** consensus_2213#0 GAGGGTATGTGTTGAGTTGGGTTTATGTGAGAGATTATCAGCAAAAATCGGGTCATAAAT 1680 consensus_2213#1 GAGGGTATGTGTTGA-TTGGGTTTATGTGAGAGATTATCAGCCAAAATCGGGTCATAAAT 323 *************** ************************** ***************** consensus_2213#0 TGAAGCTTCCCTTGTTTTGTGGCAAGGGAGAGCAGTGGTGATATTGGTTTACTAATTGTA 1740 consensus_2213#1 TGAAGCTTCCCTTGTTTTGTGCCAAGGGAGACCCGTGGTGATATTGGTTTACTAATGGTA 383 ********************* ********* * ********************** *** consensus_2213#0 GCATATACGTCTATTCAGAATTTCAGATGTAGTCCTGGTAAGCTTGGCCCTTTTTGGAGT 1800 consensus_2213#1 GCATATACGTCTATTCAGAATTTCAGATGTAGTCCTGGTAAGCTTGGCCCTTTTTGGAGT 443 ************************************************************ consensus_2213#0 ACCTGATGTTTGTTTTTCCCCCTCTTTTTGTCCCTCTTTTCTAGCAGGATCGATTCTATT 1860 consensus_2213#1 ACCTGATGTTTGTTTTTCCCCCTAAAAAAAAAA--------------------------- 476 *********************** consensus_2213#0 ACGAATGAGAGGTGATGAGTT 1881 consensus_2213#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||