cluster # 2219

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2219 cluster # 2219 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2219#0 length = 884 sequences # 1

consensus_2219#1 length = 650 sequences # 1

consensusID : consensus_2219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 884
fasta sequence

                              [GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGACCAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCAGACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGTGGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGTGGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAGGCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTACCAGATCGTCGACTNTNTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTCCAGAAGCAGACCCGTGCCCGTCAGCGTACCCGTNTCAAAGCCATCGTCATCATTGGTGAACTCGANGGGCACGTTGGTCTGGTATCAAGACCTCCAAGGAGTTGCACTGCTATCGCGCGCCATCATTATTGCCAGCTTACGTCATCCCCGTCCGTCGGGTAACTGGGTACACACTNGTACTCTACTCNCTCCCGTCAAGAAACCGCAAGTGGGTCGTACTGCGCCTATCCTCTCNCGGACCGGCTGGTGCTNCCTTGAACTTTCTCACCTGTGTATAGATCCTACATGTGAGGTACAAACTAAACACTAAGCATTTTGCGTAAATAGGTTTCCACTGAGACACTATACCCTGAGTCCTGGCCGCGTTAAAAGAGATATTTGGCGTTTTTTTTTTNTGGTTTTTTTGTGCGCGCCCCCCCCNNANAAAAAAAAAAAAAAAAAAAAGGTTGGTTTTTTATTTTGGC]

[+] EMBL AW155491             [GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGACCAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCAGACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGTGGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGTGGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAGGCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTACCAGATCGTCGACTNTNTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTCCAGAAGCAGACCCGTGCCCGTCAGCGTACCCGTNTCAAAGCCATCGTCATCATTGGTGAACTCGANGGGCACGTTGGTCTGGTATCAAGACCTCCAAGGAGTTGCACTGCTATCGCGCGCCATCATTATTGCCAGCTTACGTCATCCCCGTCCGTCGGGTAACTGGGTACACACTNGTACTCTACTCNCTCCCGTCAAGAAACCGCAAGTGGGTCGTACTGCGCCTATCCTCTCNCGGACCGGCTGGTGCTNCCTTGAACTTTCTCACCTGTGTATAGATCCTACATGTGAGGTACAAACTAAACACTAAGCATTTTGCGTAAATAGGTTTCCACTGAGACACTATACCCTGAGTCCTGGCCGCGTTAAAAGAGATATTTGGCGTTTTTTTTTTNTGGTTTTTTTGTGCGCGCCCCCCCCNNANAAAAAAAAAAAAAAAAAAAAGGTTGGTTTTTTATTTTGGC]




>consensus_2219#0
GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGAC
CAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCA
GACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGT
GGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGT
GGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAG
GCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTAC
CAGATCGTCGACTNTNTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTC
CAGAAGCAGACCCGTGCCCGTCAGCGTACCCGTNTCAAAGCCATCGTCATCATTGGTGAA
CTCGANGGGCACGTTGGTCTGGTATCAAGACCTCCAAGGAGTTGCACTGCTATCGCGCGC
CATCATTATTGCCAGCTTACGTCATCCCCGTCCGTCGGGTAACTGGGTACACACTNGTAC
TCTACTCNCTCCCGTCAAGAAACCGCAAGTGGGTCGTACTGCGCCTATCCTCTCNCGGAC
CGGCTGGTGCTNCCTTGAACTTTCTCACCTGTGTATAGATCCTACATGTGAGGTACAAAC
TAAACACTAAGCATTTTGCGTAAATAGGTTTCCACTGAGACACTATACCCTGAGTCCTGG
CCGCGTTAAAAGAGATATTTGGCGTTTTTTTTTTNTGGTTTTTTTGTGCGCGCCCCCCCC
NNANAAAAAAAAAAAAAAAAAAAAGGTTGGTTTTTTATTTTGGC

consensusID : consensus_2219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence

                              [GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGACCAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCAGACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGTGGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGTGGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAGGCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTACCAGATCGTCGACTTTTTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTCCAGAAGCAGACCCGTGCCGGGCAGCGTACCCGTGTTAAAGGGCTATGGCATTATTTGGGAGACTCCCAGGGCCACTTGGGTCTGGGGTATAAAGACCTCCAAGGAGGTTGCCCTGCTTTCCGCCCCGCCCTCATTATTGCCAAGCTTAGCGTNATCCCCCGTCGGCGTGTTAACTGGGGAACAAACCCTTGTACTCCCTACTCGCTCGGGCAAAGAGAGCGGCAAGTGCG]

[+] EMBL AW155306             [GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGACCAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCAGACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGTGGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGTGGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAGGCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTACCAGATCGTCGACTTTTTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTCCAGAAGCAGACCCGTGCCGGGCAGCGTACCCGTGTTAAAGGGCTATGGCATTATTTGGGAGACTCCCAGGGCCACTTGGGTCTGGGGTATAAAGACCTCCAAGGAGGTTGCCCTGCTTTCCGCCCCGCCCTCATTATTGCCAAGCTTAGCGTNATCCCCCGTCGGCGTGTTAACTGGGGAACAAACCCTTGTACTCCCTACTCGCTCGGGCAAAGAGAGCGGCAAGTGCG]




>consensus_2219#1
GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGAC
CAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCA
GACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGT
GGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGT
GGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAG
GCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTAC
CAGATCGTCGACTTTTTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTC
CAGAAGCAGACCCGTGCCGGGCAGCGTACCCGTGTTAAAGGGCTATGGCATTATTTGGGA
GACTCCCAGGGCCACTTGGGTCTGGGGTATAAAGACCTCCAAGGAGGTTGCCCTGCTTTC
CGCCCCGCCCTCATTATTGCCAAGCTTAGCGTNATCCCCCGTCGGCGTGTTAACTGGGGA
ACAAACCCTTGTACTCCCTACTCGCTCGGGCAAAGAGAGCGGCAAGTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2219#0      GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGAC 60
consensus_2219#1      GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGAC 60
                      ************************************************************

consensus_2219#0      CAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCA 120
consensus_2219#1      CAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCA 120
                      ************************************************************

consensus_2219#0      GACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGT 180
consensus_2219#1      GACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGT 180
                      ************************************************************

consensus_2219#0      GGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGT 240
consensus_2219#1      GGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGT 240
                      ************************************************************

consensus_2219#0      GGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAG 300
consensus_2219#1      GGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAG 300
                      ************************************************************

consensus_2219#0      GCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTAC 360
consensus_2219#1      GCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTAC 360
                      ************************************************************

consensus_2219#0      CAGATCGTCGACTNTNTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTC 420
consensus_2219#1      CAGATCGTCGACTTTTTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTC 420
                      ************* * ********************************************

consensus_2219#0      CAGAAGCAGACCCGTGCCCGTCAGCGTACCCGTNTCAAAGCCAT-CGTCATCATT--GGT 477
consensus_2219#1      CAGAAGCAGACCCGTGCCGGGCAGCGTACCCGTGTTAAAGGGCTATGGCATTATTTGGGA 480
                      ****************** * ************ * ****   *  * *** ***  ** 

consensus_2219#0      GAACTCGANGGGCACGTTGGTCTGG--TATCAAGACCTCCAAGGAG-TTGCACTGCTATC 534
consensus_2219#1      GACTCCCAGGGCCACTTGGGTCTGGGGTATAAAGACCTCCAAGGAGGTTGCCCTGCTTTC 540
                      **   * * ** *** * *******  *** *************** **** ***** **

consensus_2219#0      G--CGCGCCATCATTATTGCCA-GCTTA-CGTCATCCCCGTCCGTCGGGT-AACTGGG-- 587
consensus_2219#1      CGCCCCGCCCTCATTATTGCCAAGCTTAGCGTNATCCCCCGTCGGCGTGTTAACTGGGGA 600
                         * **** ************ ***** *** ******   ** ** ** *******  

consensus_2219#0      -TACACACTNGTACTC--TACTCNCTCCCGTCAAGAAACCG-CAAGTGGGTCGTACTGCG 643
consensus_2219#1      ACAAACCCTTGTACTCCCTACTCGCTCGGGCAAAGAGAGCGGCAAGTGCG---------- 650
                        * ** ** ******  ***** ***  *  **** * ** ****** *          

consensus_2219#0      CCTATCCTCTCNCGGACCGGCTGGTGCTNCCTTGAACTTTCTCACCTGTGTATAGATCCT 703
consensus_2219#1      ------------------------------------------------------------
                                                                                  

consensus_2219#0      ACATGTGAGGTACAAACTAAACACTAAGCATTTTGCGTAAATAGGTTTCCACTGAGACAC 763
consensus_2219#1      ------------------------------------------------------------
                                                                                  

consensus_2219#0      TATACCCTGAGTCCTGGCCGCGTTAAAAGAGATATTTGGCGTTTTTTTTTTNTGGTTTTT 823
consensus_2219#1      ------------------------------------------------------------
                                                                                  

consensus_2219#0      TTGTGCGCGCCCCCCCCNNANAAAAAAAAAAAAAAAAAAAAGGTTGGTTTTTTATTTTGG 883
consensus_2219#1      ------------------------------------------------------------
                                                                                  

consensus_2219#0      C 884
consensus_2219#1      -