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Oryza sativa
cluster # 222 cluster # 222       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_222#0 length = 1672 sequences # 2  

consensusID : consensus_222#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1672
fasta sequence
                              [TCCCACCACCTCTCGCCGCTTCGGGCATCGTCTCTCCCAGCGCCGGCCGGACCGATGGCGGCGGAGCCAGCAGCGGCCGAAGCCATGGATGTCGAGGCGCCGGCGCGACCAACCACCACCACCAGCACTGTATCCACCTCGAAGGGCAAGTCCCCCCACGACCTCCTCGCGGAGACCCGCGCCTCCGTGGAGGAGGTCGCCGCCCGGATCCTCGCCATCAAGAAGGACGACGCCCCCAGAACCGAGCTCCGGGAGCTCGTCGCCCAGATGTCCCTCCTCCTCATCACGCTTCGCCAGGCGAACAGGGAGATACTGATGGAGGAGGACAGGGTGAAGGCGGAGACGGAGGCGGCGAAGGCGCCCGTGGACTCCACGACGCTGCAGCTGCACAACCTTCTGTACGAGAAGAACCACTACGTGAAGGCCATTAGGGCGTGCCTCGACTTCCAGACCAAGTACCCGGGCATAGAGCTCGTGCCGACGGAGGAGTTCCACCGCGCCGCGCCGGCGGACATCCGCGATAAGACGCTCGCTGCTGACGCGTCCCACGACCTCATGCTCAAGCGCCTCAATTTCGAGCTAGTCCAGCGGAAAGAGCTATGCAAGCTACATGAGAAATTGGAGCAGCGGAAGAGCAGTTTGTTGGACACAATTGCAAATCAGAAAAAGTTCCTTTCGAGCCTCCCAACCCATTTGAAATCACTGAAGAAAGCATCATTGCCAGTGCAGCAGCAGCTGGGGATGCAACATACCAAGAAACTAAAGCAGCATCATGCAGCTGAACTGCTTCCAACTCCTCTATATATAGTTTACACGCAGTTTTTAGGACAGAAAGAAGCATTCGGAGAGAATATTGAAGTGGAGATCACTGGAAGCACAAAGGATGCTCAGATGTTTGCTCAACAGCAAGCTAAGCAGGAAAATGCTGGCACTTTGTCAAATGGTGATAATAGAGTGGATGACGATGCAATTGATGATGAAGAAGATGCTCAAAGAAGAAGGTCAAGGTCAAGAAAAAGTGTTGTGAAGGAAGCTAGTAATTCAGTAGTGGCATATCAACTTCATCCCCTTAAAGTTATTCTCCATGTATACGACACTGAAGAGTCTGGAGCAAAGCGTCGTAAGCTCATGGTCCTGAGATTCGACTACTTGGCAAAGTTGAACGTTGTTTGTGTTGGAATTGAAGATTCAAAGGGGCTGGACCATGATATCCTATGCAACTTATTTCCAGATGACACTGGTTTAGAGTTGCCTCATCAGATGGCTAAACTTTATGCTGGGGAGGTTCCGAACTTCAGTGAAAAGGATTCAAGGCCATACAAGTGGGCACAACATCTAGCTGGTATAGATTTCTTGCCAGAAGAGCCTCTATCTGTTGGTGATGATTCTAACAGAGCATCGAGAAGTGCGGACTTGTCATCTGGGCTTGCTTTATACCGTCAGCAGAATCGTGCACAGACTATTTTGCAGAGAATCCGCTCACGGAAGGTTGCACAGATGGCTCTTACGTGAGTCACTGCTTCACAATCTTGTAGTTTGGGATGTAACAAAATTTGGATGGTAGATCCTTATAGATGGAGGAAATGTACTTTGGCTGATGAGTTTTTGCTTCATTGCACATGTCATTCTGTGACGTGCTACATTATTAGTTGATGAAAAATATTTGATGAGC]

[+] EMBL AK103640             [TCCCACCACCTCTCGCCGCTTCGGGCATCGTCTCTCCCAGCGCCGGCCGGACCGATGGCGGCGGAGCCAGCAGCGGCCGAAGCCATGGATGTCGAGGCGCCGGCGCGACCAACCACCACCACCAGCACTGTATCCACCTCGAAGGGCAAGTCCCCCCACGACCTCCTCGCGGAGACCCGCGCCTCCGTGGAGGAGGTCGCCGCCCGGATCCTCGCCATCAAGAAGGACGACGCCCCCAGAACCGAGCTCCGGGAGCTCGTCGCCCAGATGTCCCTCCTCCTCATCACGCTTCGCCAGGCGAACAGGGAGATACTGATGGAGGAGGACAGGGTGAAGGCGGAGACGGAGGCGGCGAAGGCGCCCGTGGACTCCACGACGCTGCAGCTGCACAACCTTCTGTACGAGAAGAACCACTACGTGAAGGCCATTAGGGCGTGCCTCGACTTCCAGACCAAGTACCCGGGCATAGAGCTCGTGCCGACGGAGGAGTTCCACCGCGCCGCGCCGGCGGACATCCGCGATAAGACGCTCGCTGCTGACGCGTCCCACGACCTCATGCTCAAGCGCCTCAATTTCGAGCTAGTCCAGCGGAAAGAGCTATGCAAGCTACATGAGAAATTGGAGCAGCGGAAGAGCAGTTTGTTGGACACAATTGCAAATCAGAAAAAGTTCCTTTCGAGCCTCCCAACCCATTTGAAATCACTGAAGAAAGCATCATTGCCAGTGCAGCAGCAGCTGGGGATGCAACATACCAAGAAACTAAAGCAGCATCATGCAGCTGAACTGCTTCCAACTCCTCTATATATAGTTTACACGCAGTTTTTAGGACAGAAAGAAGCATTCGGAGAGAATATTGAAGTGGAGATCACTGGAAGCACAAAGGATGCTCAGATGTTTGCTCAACAGCAAGCTAAGCAGGAAAATGCTGGCACTTTGTCAAATGGTGATAATAGAGTGGATGACGATGCAATTGATGATGAAGAAGATGCTCAAAGAAGAAGGTCAAGGTCAAGAAAAAGTGTTGTGAAGGAAGCTAGTAATTCAGTAGTGGCATATCAACTTCATCCCCTTAAAGTTATTCTCCATGTATACGACACTGAAGAGTCTGGAGCAAAGCGTCGTAAGCTCATGGTCCTGAGATTCGACTACTTGGCAAAGTTGAACGTTGTTTGTGTTGGAATTGAAGATTCAAAGGGGCTGGACCATGATATCCTATGCAACTTATTTCCAGATGACACTGGTTTAGAGTTGCCTCATCAGATGGCTAAACTTTATGCTGGGGAGGTTCCGAACTTCAGTGAAAAGGATTCAAGGCCATACAAGTGGGCACAACATCTAGCTGGTATAGATTTCTTGCCAGAAGAGCCTCTATCTGTTGGTGATGATTCTAACAGAGCATCGAGAAGTGCGGACTTGTCATCTGGGCTTGCTTTATACCGTCAGCAGAATCGTGCACAGACTATTTTGCAGAGAATCCGCTCACGGAAGGTTGCACAGATGGCTCTTACGTGAGTCACTGCTTCACAATCTTGTAGTTTGGGATGTAACAAAATTTGGATGGTAGATCCTTATAGATGGAGGAAATGTACTTTGGCTGATGAGTTTTTGCTTCATTGCACATGTCATTCTGTGACGTGCTACATTATTAGTTGATGAAAAATATTTGATGAGC]
[+] EMBL AK063351             [      CACCTCTCGCCGCTTCGGGCATCGTCTCTCCCAGCGCCGGCCGGACCGATGGCGGCGGAGCCAGCAGCGGCCGAAGCCATGGATGTCGAGGCGCCGGCGCGACCAACCACCACCACCAGCACTGTATCCACCTCGAAGGGCAAGTCCCCCCACGACCTCCTCGCGGAGACCCGCGCCTCCGTGGAGGAGGTCGCCGCCCGGATCCTCGCCATCAAGAAGGACGACGCCCCCAGAACCGAGCTCCGGGAGCTCGTCGCCCAGATGTCCCTCCTCCTCATCACGCTTCGCCAGGCGAACAGGGAGATACTGATGGAGGAGGACAGGGTGAAGGCGGAGACGGAGGCGGCGAAGGCGCCCGTGGACTCCACGACGCTGCAGCTGCACAACCTTCTGTACGAGAAGAACCACTACGTGAAGGCCATTAGGGCGTGCCTCGACTTCCAGACCAAGTACCCGGGCATAGAGCTCGTGCCGACGGAGGAGTTCCACCGCGCCGCGCCGGCGGACATCCGCGATAAGACGCTCGCTGCTGACGCGTCCCACGACCTCATGCTCAAGCGCCTCAATTTCGAGCTAGTCCAGCGGAAAGAGCTATGCAAGCTACATGAGAAATTGGAGCAGCGGAAGAGCAGTTTGTTGGACACAATTGCAAATCAGAAAAAGTTCCTTTCGAGCCTCCCAACCCATTTGAAATCACTGAAGAAAGCATCATTGCCAGTGCAGCAGCAGCTGGGGATGCAACATACCAAGAAACTAAAGCAGCATCATGCAGCTGAACTGCTTCCAACTCCTCTATATATAGTTTACACGCAGTTTTTAGGACAGAAAGAAGCATTCGGAGAGAATATTGAAGTGGAGATCACTGGAAGCACAAAGGATGCTCAGATGTTTGCTCAACAGCAAGCTAAGCAGGAAAATGCTGGCACTTTGTCAAATGGTGATAATAGAGTGGATGACGATGCAATTGATGATGAAGAAGATGCTCAAAGAAGAAGGTCAAGGTCAAGAAAAAGTGTTGTGAAGGAAGCTAGTAATTCAGTAGTGGCATATCAACTTCATCCCCTTAAAGTTATTCTCCATGTATACGACACTGAAGAGTCTGGAGCAAAGCGTCGTAAGCTCATGGTCCTGAGATTCGACTACTTGGCAAAGTTGAACGTTGTTTGTGTTGGAATTGAAGATTCAAAGGGGCTGGACCATGATATCCTATGCAACTTATTTCCAGATGACACTGGTTTAGAGTTGCCTCATCAGATGGCTAAACTTTATGCTGGGGAGGTTCCGAACTTCAGTGAAAAGGATTCAAGGCCATACAAGTGGGCACAACATCTAGCTGGTATAGATTTCTTGCCAGAAGTGCCTCTATCTGTTGGTGATGATTCTAACAGAGCATCGAGAAGTGCGGACTTGTCATCTGGGCTTGCTTTATACCGTCAGCAGAATCGTGCACAGACTATTTTGCAGAGAATCCGCTCACGGAAGGTTGCACAGATGGCTCTTACGTGAGTCACTGCTTCACAATCTTGTAGTTTGGGATGTAACAAAATTTGGATGGTAGATCCTTATAGATGGAGGAAATGTACTTTGGCTGATGAGTTTTTGCTTCATTGCACATGTCATTCTGTGACGTGCTACATTATTAGTTGATGAAAAATA          ]


>consensus_222#0 TCCCACCACCTCTCGCCGCTTCGGGCATCGTCTCTCCCAGCGCCGGCCGGACCGATGGCG GCGGAGCCAGCAGCGGCCGAAGCCATGGATGTCGAGGCGCCGGCGCGACCAACCACCACC ACCAGCACTGTATCCACCTCGAAGGGCAAGTCCCCCCACGACCTCCTCGCGGAGACCCGC GCCTCCGTGGAGGAGGTCGCCGCCCGGATCCTCGCCATCAAGAAGGACGACGCCCCCAGA ACCGAGCTCCGGGAGCTCGTCGCCCAGATGTCCCTCCTCCTCATCACGCTTCGCCAGGCG AACAGGGAGATACTGATGGAGGAGGACAGGGTGAAGGCGGAGACGGAGGCGGCGAAGGCG CCCGTGGACTCCACGACGCTGCAGCTGCACAACCTTCTGTACGAGAAGAACCACTACGTG AAGGCCATTAGGGCGTGCCTCGACTTCCAGACCAAGTACCCGGGCATAGAGCTCGTGCCG ACGGAGGAGTTCCACCGCGCCGCGCCGGCGGACATCCGCGATAAGACGCTCGCTGCTGAC GCGTCCCACGACCTCATGCTCAAGCGCCTCAATTTCGAGCTAGTCCAGCGGAAAGAGCTA TGCAAGCTACATGAGAAATTGGAGCAGCGGAAGAGCAGTTTGTTGGACACAATTGCAAAT CAGAAAAAGTTCCTTTCGAGCCTCCCAACCCATTTGAAATCACTGAAGAAAGCATCATTG CCAGTGCAGCAGCAGCTGGGGATGCAACATACCAAGAAACTAAAGCAGCATCATGCAGCT GAACTGCTTCCAACTCCTCTATATATAGTTTACACGCAGTTTTTAGGACAGAAAGAAGCA TTCGGAGAGAATATTGAAGTGGAGATCACTGGAAGCACAAAGGATGCTCAGATGTTTGCT CAACAGCAAGCTAAGCAGGAAAATGCTGGCACTTTGTCAAATGGTGATAATAGAGTGGAT GACGATGCAATTGATGATGAAGAAGATGCTCAAAGAAGAAGGTCAAGGTCAAGAAAAAGT GTTGTGAAGGAAGCTAGTAATTCAGTAGTGGCATATCAACTTCATCCCCTTAAAGTTATT CTCCATGTATACGACACTGAAGAGTCTGGAGCAAAGCGTCGTAAGCTCATGGTCCTGAGA TTCGACTACTTGGCAAAGTTGAACGTTGTTTGTGTTGGAATTGAAGATTCAAAGGGGCTG GACCATGATATCCTATGCAACTTATTTCCAGATGACACTGGTTTAGAGTTGCCTCATCAG ATGGCTAAACTTTATGCTGGGGAGGTTCCGAACTTCAGTGAAAAGGATTCAAGGCCATAC AAGTGGGCACAACATCTAGCTGGTATAGATTTCTTGCCAGAAGAGCCTCTATCTGTTGGT GATGATTCTAACAGAGCATCGAGAAGTGCGGACTTGTCATCTGGGCTTGCTTTATACCGT CAGCAGAATCGTGCACAGACTATTTTGCAGAGAATCCGCTCACGGAAGGTTGCACAGATG GCTCTTACGTGAGTCACTGCTTCACAATCTTGTAGTTTGGGATGTAACAAAATTTGGATG GTAGATCCTTATAGATGGAGGAAATGTACTTTGGCTGATGAGTTTTTGCTTCATTGCACA TGTCATTCTGTGACGTGCTACATTATTAGTTGATGAAAAATATTTGATGAGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)