These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence [ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATCCAATAACTCAATCTCACTTTCCCATGAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGACGCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGCAAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCGGCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAACGCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGCACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTCCAACAACTACNGGAGCTCCGTCTTGGCTCCACCGGTACCTCACCAACTCGGGCCCCACAGGTTCAAATGATGAAAAGGCCGACCCCCGGTTACTCTACCGGAACACCTGCTGCCCCGGTGCATAATGCTCCACAATTCGAAATTGGTTTGGTCACCGCACATGGCCGATGACCGTCATGCTTTGGTTACCCTCCAACTGGAAGATGTCAAAAACGAATGGCTTTGTCCGGCCTGGCGAAAACGGCCGGCCCGGGTTGGGCGCCGCTTAAAATGGCCAATTTAATAAGTAAACGCACCCCCCGCAATGGGAGAAAAAAAAAAAAAATATTCTTTAATTATTAAGCCCTCCCCCTCCCCCCTAAAAAACCACAAANNNAAAAACCGGAGAGGGGGGAAATGGTTTTTGCTTT] [+] EMBL AW155536 [ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATCCAATAACTCAATCTCACTTTCCCATGAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGACGCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGCAAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCGGCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAACGCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGCACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTCCAACAACTACNGGAGCTCCGTCTTGGCTCCACCGGTACCTCACCAACTCGGGCCCCACAGGTTCAAATGATGAAAAGGCCGACCCCCGGTTACTCTACCGGAACACCTGCTGCCCCGGTGCATAATGCTCCACAATTCGAAATTGGTTTGGTCACCGCACATGGCCGATGACCGTCATGCTTTGGTTACCCTCCAACTGGAAGATGTCAAAAACGAATGGCTTTGTCCGGCCTGGCGAAAACGGCCGGCCCGGGTTGGGCGCCGCTTAAAATGGCCAATTTAATAAGTAAACGCACCCCCCGCAATGGGAGAAAAAAAAAAAAAATATTCTTTAATTATTAAGCCCTCCCCCTCCCCCCTAAAAAACCACAAANNNAAAAACCGGAGAGGGGGGAAATGGTTTTTGCTTT] consensusID : consensus_2222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATGCAATAACTCAATCTCACTTTCCCATCAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGACGCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGCAAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCGGCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAACGCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGCACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTTCAACAACTACGGGAGCTTCCGTCTTTGCTTCAACGGGAACTTCACCCACATTGGGCCCCACACGTGTCAAACATGATGAACAAGGGCCGACCCCCGCGTAGACTCTGACCGTGACCACCGTGCTGCCCCCGGGGCATGACTGGCTCCACAACTACNGCAGCTCGGGTCTTGGGCTCACCGCACCACTGGTACCGGCATGACCGGCTCCCATGGCACTNGGCATGAACCAGCTCCACAC] [+] EMBL AW155352 [ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATGCAATAACTCAATCTCACTTTCCCATCAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGACGCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGCAAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCGGCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAACGCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGCACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTTCAACAACTACGGGAGCTTCCGTCTTTGCTTCAACGGGAACTTCACCCACATTGGGCCCCACACGTGTCAAACATGATGAACAAGGGCCGACCCCCGCGTAGACTCTGACCGTGACCACCGTGCTGCCCCCGGGGCATGACTGGCTCCACAACTACNGCAGCTCGGGTCTTGGGCTCACCGCACCACTGGTACCGGCATGACCGGCTCCCATGGCACTNGGCATGAACCAGCTCCACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2222#0 ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATCCAATAACTCAATCTCACTTT 60 consensus_2222#1 ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATGCAATAACTCAATCTCACTTT 60 *************************************** ******************** consensus_2222#0 CCCATGAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGAC 120 consensus_2222#1 CCCATCAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGAC 120 ***** ****************************************************** consensus_2222#0 GCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGC 180 consensus_2222#1 GCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGC 180 ************************************************************ consensus_2222#0 AAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCG 240 consensus_2222#1 AAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCG 240 ************************************************************ consensus_2222#0 GCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAAC 300 consensus_2222#1 GCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAAC 300 ************************************************************ consensus_2222#0 GCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGC 360 consensus_2222#1 GCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGC 360 ************************************************************ consensus_2222#0 ACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTCCAACAACTACNGGAGC 420 consensus_2222#1 ACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTTCAACAACTACGGGAGC 420 ******************************************* ********** ***** consensus_2222#0 T-CCGTCTTGGCTCCACCGGTA-CCTCACCAAC-TCGGGCCCCACAGGT-TCAAA--TGA 474 consensus_2222#1 TTCCGTCTTTGCTTCAACGGGAACTTCACCCACATTGGGCCCCACACGTGTCAAACATGA 480 * ******* *** ** *** * * ***** ** * ********** ** ***** *** consensus_2222#0 TGAA--AAGGCCGACCCCCGGTTA--CTCT-ACCG-GAACACC-TGCTGCCCC-GGTGCA 526 consensus_2222#1 TGAACAAGGGCCGACCCCCGCGTAGACTCTGACCGTGACCACCGTGCTGCCCCCGGGGCA 540 **** * ************ ** **** **** ** **** ********* ** *** consensus_2222#0 TAAT--GCTCCACAATTCGAAATTGGTTTGGTCACCGCACATGGCCGATGACCGTCAT-G 583 consensus_2222#1 TGACTGGCTCCACAACT--ACNGCAGCTCGGGTCTTGGGCTCACCGCACCACTGGTACCG 598 * * ********* * * * * ** * * * * ** * * * consensus_2222#0 CTTTGGTTACCCTCCAACTGGAAGATGTCAAAAACGAATGGCTTTGTCCGGCCTGGCGAA 643 consensus_2222#1 GCATGACCGGCTCCCA--TGGCACTNGGCATGAAC---CAGCTCCACAC----------- 642 ** * *** *** * * ** *** *** * consensus_2222#0 AACGGCCGGCCCGGGTTGGGCGCCGCTTAAAATGGCCAATTTAATAAGTAAACGCACCCC 703 consensus_2222#1 ------------------------------------------------------------ consensus_2222#0 CCGCAATGGGAGAAAAAAAAAAAAAATATTCTTTAATTATTAAGCCCTCCCCCTCCCCCC 763 consensus_2222#1 ------------------------------------------------------------ consensus_2222#0 TAAAAAACCACAAANNNAAAAACCGGAGAGGGGGGAAATGGTTTTTGCTTT 814 consensus_2222#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||