cluster # 2226

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Oryza sativa
cluster # 2226 cluster # 2226 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2226#0 length = 875 sequences # 1

consensus_2226#1 length = 861 sequences # 1

consensusID : consensus_2226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 875
fasta sequence

                              [TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCTTTTCGAAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAATGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCCCCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACACCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTNTCTTCGACATATTCTTCAACGGCGTGACCAAACGCCGTCGAGTCAACCTCTACGATGATGTAGGTCCCAAGACCGCCGACAACTNCATGCGTCTTTGCGTTTGCGAGCCCCCGCGTNGAGGCTACAAGGACTCTGCTTTCACCGATCATCCCGACTCATGCTCCGGGGGTGACTACACCGTGCACCGACCCGTTGCAGTCGTCTCGGCAGGAGTTGCTGCAGGAACTCTATCAGCAACCAGCCTGATTCTTGCATGCCAACGCGGCCCACCACAACGGTGCGATTTAATACCATGCAAGACCATGGTGACGGAAGCACTCCTTTTGCAAGGTAGTCGTTTAAGATGATTAACCAATGAGGTTGGTTGCCCCGGCCCACACAACAGACCANTAAACCGGGCCATAATAGCTTTGGGAGAGTTTGTCTATGGGCCTCTCGAGGGGTATATATTCGTTCTGTGTAGGAAAGCGGTGGGAGAAGGAACAGAGCCTCTTTCTCTACACACTGTGGTGAAAAAAAAAAAAAAGAGGNNNNNNNANNNNGGGGGGNTTTTNTTGCGTGAGGTTTTTAAGGCCCGGGGGGTGGCC]

[+] EMBL AW155373             [TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCTTTTCGAAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAATGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCCCCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACACCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTNTCTTCGACATATTCTTCAACGGCGTGACCAAACGCCGTCGAGTCAACCTCTACGATGATGTAGGTCCCAAGACCGCCGACAACTNCATGCGTCTTTGCGTTTGCGAGCCCCCGCGTNGAGGCTACAAGGACTCTGCTTTCACCGATCATCCCGACTCATGCTCCGGGGGTGACTACACCGTGCACCGACCCGTTGCAGTCGTCTCGGCAGGAGTTGCTGCAGGAACTCTATCAGCAACCAGCCTGATTCTTGCATGCCAACGCGGCCCACCACAACGGTGCGATTTAATACCATGCAAGACCATGGTGACGGAAGCACTCCTTTTGCAAGGTAGTCGTTTAAGATGATTAACCAATGAGGTTGGTTGCCCCGGCCCACACAACAGACCANTAAACCGGGCCATAATAGCTTTGGGAGAGTTTGTCTATGGGCCTCTCGAGGGGTATATATTCGTTCTGTGTAGGAAAGCGGTGGGAGAAGGAACAGAGCCTCTTTCTCTACACACTGTGGTGAAAAAAAAAAAAAAGAGGNNNNNNNANNNNGGGGGGNTTTTNTTGCGTGAGGTTTTTAAGGCCCGGGGGGTGGCC]




>consensus_2226#0
TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCTTTTCG
AAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAA
TGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCC
CCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACA
CCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTNTCTTCGACATAT
TCTTCAACGGCGTGACCAAACGCCGTCGAGTCAACCTCTACGATGATGTAGGTCCCAAGA
CCGCCGACAACTNCATGCGTCTTTGCGTTTGCGAGCCCCCGCGTNGAGGCTACAAGGACT
CTGCTTTCACCGATCATCCCGACTCATGCTCCGGGGGTGACTACACCGTGCACCGACCCG
TTGCAGTCGTCTCGGCAGGAGTTGCTGCAGGAACTCTATCAGCAACCAGCCTGATTCTTG
CATGCCAACGCGGCCCACCACAACGGTGCGATTTAATACCATGCAAGACCATGGTGACGG
AAGCACTCCTTTTGCAAGGTAGTCGTTTAAGATGATTAACCAATGAGGTTGGTTGCCCCG
GCCCACACAACAGACCANTAAACCGGGCCATAATAGCTTTGGGAGAGTTTGTCTATGGGC
CTCTCGAGGGGTATATATTCGTTCTGTGTAGGAAAGCGGTGGGAGAAGGAACAGAGCCTC
TTTCTCTACACACTGTGGTGAAAAAAAAAAAAAAGAGGNNNNNNNANNNNGGGGGGNTTT
TNTTGCGTGAGGTTTTTAAGGCCCGGGGGGTGGCC

consensusID : consensus_2226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 861
fasta sequence

                              [TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCGTTTCGAAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAATGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCCCCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACACCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTTTCTTCGACATTATCTTCAACGGCGTGACCAAGCGCGTCGAGTTCAAGCTCTACGATGATGTAGTCCCCAAGACCGCCGACAACTTCATGCGTCTTTGCGTTGGCGAGCCCGGCGTTGGAGGCTACAAGGACTCTGGCTTTCACCGATCATCCTCGACTTCATGCTGCAGAGCGGTGACTTCACCCGTCGCAACAGCAGCCGGTGGCAAGNCGTCTACTGCGAGAAGATTTGCGACGAGACTACCAGATATGCACACCAGGCCTGGAGTACTGTCATGGTCGACGCGGCCCCACACAACAGGTGGCAGTGTCATCACACTGTGAGACTAATGGTGGACGCAGGCACCGCTCTTTGTAGGAGTCTCCGCTTAAGAGGATAAACCATGAGGTCTGTTCTCACGGGCCCACACAAGGGCATTGGACGTGGCCCGTAATGGCTTTGTGGAAGTTTTGTCTCTGGGGCGCTCTCGAGGGGGGTGGGAAATTTTTCTTGTATGAGAAACCGGGGGGGAAGGGGAAAAATAGATTATTTTTCTCTCTAATCTCTGTGGTCTTAGGAAGATATAAAAAAATA]

[+] EMBL AW155439             [TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCGTTTCGAAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAATGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCCCCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACACCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTTTCTTCGACATTATCTTCAACGGCGTGACCAAGCGCGTCGAGTTCAAGCTCTACGATGATGTAGTCCCCAAGACCGCCGACAACTTCATGCGTCTTTGCGTTGGCGAGCCCGGCGTTGGAGGCTACAAGGACTCTGGCTTTCACCGATCATCCTCGACTTCATGCTGCAGAGCGGTGACTTCACCCGTCGCAACAGCAGCCGGTGGCAAGNCGTCTACTGCGAGAAGATTTGCGACGAGACTACCAGATATGCACACCAGGCCTGGAGTACTGTCATGGTCGACGCGGCCCCACACAACAGGTGGCAGTGTCATCACACTGTGAGACTAATGGTGGACGCAGGCACCGCTCTTTGTAGGAGTCTCCGCTTAAGAGGATAAACCATGAGGTCTGTTCTCACGGGCCCACACAAGGGCATTGGACGTGGCCCGTAATGGCTTTGTGGAAGTTTTGTCTCTGGGGCGCTCTCGAGGGGGGTGGGAAATTTTTCTTGTATGAGAAACCGGGGGGGAAGGGGAAAAATAGATTATTTTTCTCTCTAATCTCTGTGGTCTTAGGAAGATATAAAAAAATA]




>consensus_2226#1
TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCGTTTCG
AAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAA
TGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCC
CCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACA
CCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTTTCTTCGACATTA
TCTTCAACGGCGTGACCAAGCGCGTCGAGTTCAAGCTCTACGATGATGTAGTCCCCAAGA
CCGCCGACAACTTCATGCGTCTTTGCGTTGGCGAGCCCGGCGTTGGAGGCTACAAGGACT
CTGGCTTTCACCGATCATCCTCGACTTCATGCTGCAGAGCGGTGACTTCACCCGTCGCAA
CAGCAGCCGGTGGCAAGNCGTCTACTGCGAGAAGATTTGCGACGAGACTACCAGATATGC
ACACCAGGCCTGGAGTACTGTCATGGTCGACGCGGCCCCACACAACAGGTGGCAGTGTCA
TCACACTGTGAGACTAATGGTGGACGCAGGCACCGCTCTTTGTAGGAGTCTCCGCTTAAG
AGGATAAACCATGAGGTCTGTTCTCACGGGCCCACACAAGGGCATTGGACGTGGCCCGTA
ATGGCTTTGTGGAAGTTTTGTCTCTGGGGCGCTCTCGAGGGGGGTGGGAAATTTTTCTTG
TATGAGAAACCGGGGGGGAAGGGGAAAAATAGATTATTTTTCTCTCTAATCTCTGTGGTC
TTAGGAAGATATAAAAAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2226#0      TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCTTTTCG 60
consensus_2226#1      TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCGTTTCG 60
                      ****************************************************** *****

consensus_2226#0      AAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAA 120
consensus_2226#1      AAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAA 120
                      ************************************************************

consensus_2226#0      TGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCC 180
consensus_2226#1      TGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCC 180
                      ************************************************************

consensus_2226#0      CCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACA 240
consensus_2226#1      CCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACA 240
                      ************************************************************

consensus_2226#0      CCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTNTCTTCGACATAT 300
consensus_2226#1      CCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTTTCTTCGACATTA 300
                      *********************************************** **********  

consensus_2226#0      TCTTCAACGGCGTGACCAAACGCCGTCGAGT-CAACCTCTACGATGATGTAGGTCCCAAG 359
consensus_2226#1      TCTTCAACGGCGTGACCAAGCGC-GTCGAGTTCAAGCTCTACGATGATGTAGTCCCCAAG 359
                      ******************* *** ******* *** ****************  ******

consensus_2226#0      ACCGCCGACAACTNCATGCGTCTTTGCGTTTGCGAGCCCCCGCGTNGAGGCTACAAGGAC 419
consensus_2226#1      ACCGCCGACAACTTCATGCGTCTTTGCGTTGGCGAGCCCGGCGTTGGAGGCTACAAGGAC 419
                      ************* **************** ********     * **************

consensus_2226#0      TCTG-CTTTCACCGATCATCC-CGACT-CATGCTCCGGGG--GTGACTACACC-GT---- 469
consensus_2226#1      TCTGGCTTTCACCGATCATCCTCGACTTCATGCTGCAGAGCGGTGACTTCACCCGTCGCA 479
                      **** **************** ***** ****** * * *  ****** **** **    

consensus_2226#0      GCACCGACCCGTTGCA-GTCGTCT----CGGCAGGAGTTGCTGCAGGAACTC----TATC 520
consensus_2226#1      ACAGCAGCCGGTGGCAAGNCGTCTACTGCGAGAAGATTTGCGACGAGACTACCAGATATG 539
                       ** *  ** ** *** * *****    **  * ** ****  *  **   *    *** 

consensus_2226#0      AGCAACCAGCCTGA--TTCTTGCATG-CCAACGCGGCCCACCACAACGGT--GCGATTTA 575
consensus_2226#1      CACACCAGGCCTGGAGTACTGTCATGGTCGACGCGGCCCCACACAACAGGTGGCAGTGTC 599
                        ** *  *****   * **  ****  * *********  ****** *   **  * * 

consensus_2226#0      ATACCA-TGCAAGACCA-TGGTG-ACGGAAGCACTCCT-TTTGCAAG-GTAGTCGTTTAA 630
consensus_2226#1      ATCACACTGTGAGACTAATGGTGGACGCAGGCACCGCTCTTTGTAGGAGTCTCCGCTTAA 659
                      **  ** **  **** * ***** *** * ****  ** **** * * **   ** ****

consensus_2226#0      GATGATTAACCAATGAGGTTGGTTGCCCCGGCCCACACAACAGACCANTAAAC-CGGGCC 689
consensus_2226#1      GAGGATAAACCA-TGAGGTCTGTTCTCACGGGCC-CACACAAGGGCATTGGACGTGGCCC 717
                      ** *** ***** ******  ***  * *** ** ****  **  ** *  **  ** **

consensus_2226#0      ATAATAGCTTTGGGAGAGTTT-GTCTATGGGCC--TCTCGAGGGGTAT---ATATTCGTT 743
consensus_2226#1      GTAATGGCTTTGTGGAAGTTTTGTCTCTGGGGCGCTCTCGAGGGGGGTGGGAAATTTTTC 777
                       **** ****** *  ***** **** **** *  **********  *   * ***  * 

consensus_2226#0      CTGTGTAGGAAAGCGGTGGGAGAAGGAACAGA------GCCTCTTTCTCTACACACTGTG 797
consensus_2226#1      TTGTATGAGAAACCGGGGGGGAAGGGGAAAAATAGATTATTTTTCTCTCTAATCTCTGTG 837
                       *** *  **** *** ***  * ** * * *         * * ******  * *****

consensus_2226#0      GTGAAAAAAAAAAAAAAGAGGNNNNNNNANNNNGGGGGGNTTTTNTTGCGTGAGGTTTTT 857
consensus_2226#1      GTCTTAGGAAGATATAAAAAAATA------------------------------------ 861
                      **   *  ** * * ** *                                         

consensus_2226#0      AAGGCCCGGGGGGTGGCC 875
consensus_2226#1      ------------------