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Oryza sativa
cluster # 2228 cluster # 2228       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2228#0 length = 773 sequences # 1  
consensus_2228#1 length = 482 sequences # 1  

consensusID : consensus_2228#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 773
fasta sequence
                              [AAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGTGAGCTCATCTTTCTCAAGTACAACTACTTTCGCGCCGACGCGCCCGACGCGCCGTCCAAGCGCGGTCGGAGCCGTCCTTCTTTGTTCTCTCTTCCCTTCTTTTAATACGATCTCCTCCTCTTTTTTTTTTTTATTCTTTCCTGGCGCTTCTTTTTCTTTATTTTTTTTCTGTGTTCGTTTGGTTTTACTGTTCTTTTTTTTTTGTTTCTTGTTTCTCTTTGCTGTCTCGTCTTGTGTTTGTCTTTTGTGCCTTGTTATGTTGTGTGTGTTGGGGTTCAGCGCTTTGTTGTTTTTTTTTGTCTTGGTTTTTGTTGTTTTCTTCCTGGCGTCGTTGTGTGTGTGTCTTTGACTTTCGGTGTCGTGTTGTCGCTCTCCTTCCTCTTGCCTTTTGCCCATTCTTTGTTCTGTCTCTCTTCTATCCCCCCAGTATTCTTTTGTGTTTGTGCCGTTTCTTTCTGTTCTCTAGCTATGTCTTGTTTTATTTTTTCATTGCGTGTTTTGTTTTTTTTCTGGTTTGTTATTTCTTCAGTTGTTCTCTCCTCTCGTGGTTTTCTTCTTGTGTTTTGTTATATTTAGTTGTTGATT]

[+] EMBL BE041029             [AAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGTGAGCTCATCTTTCTCAAGTACAACTACTTTCGCGCCGACGCGCCCGACGCGCCGTCCAAGCGCGGTCGGAGCCGTCCTTCTTTGTTCTCTCTTCCCTTCTTTTAATACGATCTCCTCCTCTTTTTTTTTTTTATTCTTTCCTGGCGCTTCTTTTTCTTTATTTTTTTTCTGTGTTCGTTTGGTTTTACTGTTCTTTTTTTTTTGTTTCTTGTTTCTCTTTGCTGTCTCGTCTTGTGTTTGTCTTTTGTGCCTTGTTATGTTGTGTGTGTTGGGGTTCAGCGCTTTGTTGTTTTTTTTTGTCTTGGTTTTTGTTGTTTTCTTCCTGGCGTCGTTGTGTGTGTGTCTTTGACTTTCGGTGTCGTGTTGTCGCTCTCCTTCCTCTTGCCTTTTGCCCATTCTTTGTTCTGTCTCTCTTCTATCCCCCCAGTATTCTTTTGTGTTTGTGCCGTTTCTTTCTGTTCTCTAGCTATGTCTTGTTTTATTTTTTCATTGCGTGTTTTGTTTTTTTTCTGGTTTGTTATTTCTTCAGTTGTTCTCTCCTCTCGTGGTTTTCTTCTTGTGTTTTGTTATATTTAGTTGTTGATT]


>consensus_2228#0 AAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGG GGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGT ACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGG AGTCCGGTGAGCTCATCTTTCTCAAGTACAACTACTTTCGCGCCGACGCGCCCGACGCGC CGTCCAAGCGCGGTCGGAGCCGTCCTTCTTTGTTCTCTCTTCCCTTCTTTTAATACGATC TCCTCCTCTTTTTTTTTTTTATTCTTTCCTGGCGCTTCTTTTTCTTTATTTTTTTTCTGT GTTCGTTTGGTTTTACTGTTCTTTTTTTTTTGTTTCTTGTTTCTCTTTGCTGTCTCGTCT TGTGTTTGTCTTTTGTGCCTTGTTATGTTGTGTGTGTTGGGGTTCAGCGCTTTGTTGTTT TTTTTTGTCTTGGTTTTTGTTGTTTTCTTCCTGGCGTCGTTGTGTGTGTGTCTTTGACTT TCGGTGTCGTGTTGTCGCTCTCCTTCCTCTTGCCTTTTGCCCATTCTTTGTTCTGTCTCT CTTCTATCCCCCCAGTATTCTTTTGTGTTTGTGCCGTTTCTTTCTGTTCTCTAGCTATGT CTTGTTTTATTTTTTCATTGCGTGTTTTGTTTTTTTTCTGGTTTGTTATTTCTTCAGTTG TTCTCTCCTCTCGTGGTTTTCTTCTTGTGTTTTGTTATATTTAGTTGTTGATT



consensusID : consensus_2228#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence
                              [CCTCTCCTCCTCCGCCATGGCCGCCGCTGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGCGAGCTCATCTTCCTCAAGAACAACTACTTCCGCGCCGACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGTCGCCCCCCCAAGCCGCGGGACCCCAACGCGCCGCCGCCGCCGCCCAAGCCCTCCTCGCCACGCCCCCGCGGCCGCCCGCCCAAGTCCAAGGACCCCATCTCCGACGCCATCCCCAAGTCCCGCGGCCGCCCGCCCAAGAAGGCCAAGACGGCTCCCGCCCCTCCTCCCGCCGCCGGCGACGGCTCCGCTC]

[-] EMBL BI306480             [CCTCTCCTCCTCCGCCATGGCCGCCGCTGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGCGAGCTCATCTTCCTCAAGAACAACTACTTCCGCGCCGACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGTCGCCCCCCCAAGCCGCGGGACCCCAACGCGCCGCCGCCGCCGCCCAAGCCCTCCTCGCCACGCCCCCGCGGCCGCCCGCCCAAGTCCAAGGACCCCATCTCCGACGCCATCCCCAAGTCCCGCGGCCGCCCGCCCAAGAAGGCCAAGACGGCTCCCGCCCCTCCTCCCGCCGCCGGCGACGGCTCCGCTC]


>consensus_2228#1 CCTCTCCTCCTCCGCCATGGCCGCCGCTGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCC CTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAA GTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTC GCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGCGAGCTCATCTTCCTCAAGAA CAACTACTTCCGCGCCGACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGTCGCCCCCC CAAGCCGCGGGACCCCAACGCGCCGCCGCCGCCGCCCAAGCCCTCCTCGCCACGCCCCCG CGGCCGCCCGCCCAAGTCCAAGGACCCCATCTCCGACGCCATCCCCAAGTCCCGCGGCCG CCCGCCCAAGAAGGCCAAGACGGCTCCCGCCCCTCCTCCCGCCGCCGGCGACGGCTCCGC TC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2228#0      --------------------------------AAGCCTCCAAGCCGCCGCCTCTCCCGCC 28
consensus_2228#1      CCTCTCCTCCTCCGCCATGGCCGCCGCTGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCC 60
                                                      ****************************

consensus_2228#0      CTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAA 88
consensus_2228#1      CTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAA 120
                      ************************************************************

consensus_2228#0      GTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTC 148
consensus_2228#1      GTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTC 180
                      ************************************************************

consensus_2228#0      GCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGTGAGCTCATCTTTCTCAAGTA 208
consensus_2228#1      GCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGCGAGCTCATCTTCCTCAAGAA 240
                      *************************************** *********** ****** *

consensus_2228#0      CAACTACTTTCGCGCCGACGCGCCCGACGCGCCGTCCAAGCGCGGTCGGAGCCGTCCTTC 268
consensus_2228#1      CAACTACTTCCGCGCCGACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGTCGCCCCCC 300
                      ********* ************************ ********** *** * ** **  *

consensus_2228#0      TTTGTTCTCTCTTCCCTTCTTTTAATACGATCTCCTCCTCTTTTTTTTTTTTATTCTTTC 328
consensus_2228#1      CAAGCCGCGGGACCCC-------AACGCG-CCGCCGCCGCCGCCC-------AAGCCCTC 345
                         *         ***       **  **  * ** ** *            *  *  **

consensus_2228#0      CTGGCGCTTCTTTTTCTTTATTTTTTTTCTGTGTTCGTTTGGTTTTACTGTTCTTTTTTT 388
consensus_2228#1      CT--CGCCACGCCCCCGCGGCCGCCCGCCCAAGTCCAAGGACCCCATCTCCGACGCCATC 403
                      **  ***  *     *            *   ** *           **         * 

consensus_2228#0      TTTGTTTCTTGTTTCTCTTTGCTGTCTCGTCTTGTGTTTGTCTTTTGTGCCTTGTTATGT 448
consensus_2228#1      CCCAAGTCCCGCGGCCGCCCGCCCAAGAAGGCCAAGACGG-CTCCCGCCCCTCCTCCCGC 462
                            **  *   *     **             *   * **   *  ***  *   * 

consensus_2228#0      TGTGTGTGTTGGGGTTCAGCGCTTTGTTGTTTTTTTTTGTCTTGGTTTTTGTTGTTTTCT 508
consensus_2228#1      CGCCGGCGACG--GCTCCGCTC-------------------------------------- 482
                       *   * *  *  * ** ** *                                      

consensus_2228#0      TCCTGGCGTCGTTGTGTGTGTGTCTTTGACTTTCGGTGTCGTGTTGTCGCTCTCCTTCCT 568
consensus_2228#1      ------------------------------------------------------------
                                                                                  

consensus_2228#0      CTTGCCTTTTGCCCATTCTTTGTTCTGTCTCTCTTCTATCCCCCCAGTATTCTTTTGTGT 628
consensus_2228#1      ------------------------------------------------------------
                                                                                  

consensus_2228#0      TTGTGCCGTTTCTTTCTGTTCTCTAGCTATGTCTTGTTTTATTTTTTCATTGCGTGTTTT 688
consensus_2228#1      ------------------------------------------------------------
                                                                                  

consensus_2228#0      GTTTTTTTTCTGGTTTGTTATTTCTTCAGTTGTTCTCTCCTCTCGTGGTTTTCTTCTTGT 748
consensus_2228#1      ------------------------------------------------------------
                                                                                  

consensus_2228#0      GTTTTGTTATATTTAGTTGTTGATT 773
consensus_2228#1      -------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)