These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [AAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGTGAGCTCATCTTTCTCAAGTACAACTACTTTCGCGCCGACGCGCCCGACGCGCCGTCCAAGCGCGGTCGGAGCCGTCCTTCTTTGTTCTCTCTTCCCTTCTTTTAATACGATCTCCTCCTCTTTTTTTTTTTTATTCTTTCCTGGCGCTTCTTTTTCTTTATTTTTTTTCTGTGTTCGTTTGGTTTTACTGTTCTTTTTTTTTTGTTTCTTGTTTCTCTTTGCTGTCTCGTCTTGTGTTTGTCTTTTGTGCCTTGTTATGTTGTGTGTGTTGGGGTTCAGCGCTTTGTTGTTTTTTTTTGTCTTGGTTTTTGTTGTTTTCTTCCTGGCGTCGTTGTGTGTGTGTCTTTGACTTTCGGTGTCGTGTTGTCGCTCTCCTTCCTCTTGCCTTTTGCCCATTCTTTGTTCTGTCTCTCTTCTATCCCCCCAGTATTCTTTTGTGTTTGTGCCGTTTCTTTCTGTTCTCTAGCTATGTCTTGTTTTATTTTTTCATTGCGTGTTTTGTTTTTTTTCTGGTTTGTTATTTCTTCAGTTGTTCTCTCCTCTCGTGGTTTTCTTCTTGTGTTTTGTTATATTTAGTTGTTGATT] [+] EMBL BE041029 [AAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGTGAGCTCATCTTTCTCAAGTACAACTACTTTCGCGCCGACGCGCCCGACGCGCCGTCCAAGCGCGGTCGGAGCCGTCCTTCTTTGTTCTCTCTTCCCTTCTTTTAATACGATCTCCTCCTCTTTTTTTTTTTTATTCTTTCCTGGCGCTTCTTTTTCTTTATTTTTTTTCTGTGTTCGTTTGGTTTTACTGTTCTTTTTTTTTTGTTTCTTGTTTCTCTTTGCTGTCTCGTCTTGTGTTTGTCTTTTGTGCCTTGTTATGTTGTGTGTGTTGGGGTTCAGCGCTTTGTTGTTTTTTTTTGTCTTGGTTTTTGTTGTTTTCTTCCTGGCGTCGTTGTGTGTGTGTCTTTGACTTTCGGTGTCGTGTTGTCGCTCTCCTTCCTCTTGCCTTTTGCCCATTCTTTGTTCTGTCTCTCTTCTATCCCCCCAGTATTCTTTTGTGTTTGTGCCGTTTCTTTCTGTTCTCTAGCTATGTCTTGTTTTATTTTTTCATTGCGTGTTTTGTTTTTTTTCTGGTTTGTTATTTCTTCAGTTGTTCTCTCCTCTCGTGGTTTTCTTCTTGTGTTTTGTTATATTTAGTTGTTGATT] consensusID : consensus_2228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [CCTCTCCTCCTCCGCCATGGCCGCCGCTGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGCGAGCTCATCTTCCTCAAGAACAACTACTTCCGCGCCGACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGTCGCCCCCCCAAGCCGCGGGACCCCAACGCGCCGCCGCCGCCGCCCAAGCCCTCCTCGCCACGCCCCCGCGGCCGCCCGCCCAAGTCCAAGGACCCCATCTCCGACGCCATCCCCAAGTCCCGCGGCCGCCCGCCCAAGAAGGCCAAGACGGCTCCCGCCCCTCCTCCCGCCGCCGGCGACGGCTCCGCTC] [-] EMBL BI306480 [CCTCTCCTCCTCCGCCATGGCCGCCGCTGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGCGAGCTCATCTTCCTCAAGAACAACTACTTCCGCGCCGACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGTCGCCCCCCCAAGCCGCGGGACCCCAACGCGCCGCCGCCGCCGCCCAAGCCCTCCTCGCCACGCCCCCGCGGCCGCCCGCCCAAGTCCAAGGACCCCATCTCCGACGCCATCCCCAAGTCCCGCGGCCGCCCGCCCAAGAAGGCCAAGACGGCTCCCGCCCCTCCTCCCGCCGCCGGCGACGGCTCCGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2228#0 --------------------------------AAGCCTCCAAGCCGCCGCCTCTCCCGCC 28 consensus_2228#1 CCTCTCCTCCTCCGCCATGGCCGCCGCTGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCC 60 **************************** consensus_2228#0 CTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAA 88 consensus_2228#1 CTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAA 120 ************************************************************ consensus_2228#0 GTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTC 148 consensus_2228#1 GTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTC 180 ************************************************************ consensus_2228#0 GCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGTGAGCTCATCTTTCTCAAGTA 208 consensus_2228#1 GCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGCGAGCTCATCTTCCTCAAGAA 240 *************************************** *********** ****** * consensus_2228#0 CAACTACTTTCGCGCCGACGCGCCCGACGCGCCGTCCAAGCGCGGTCGGAGCCGTCCTTC 268 consensus_2228#1 CAACTACTTCCGCGCCGACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGTCGCCCCCC 300 ********* ************************ ********** *** * ** ** * consensus_2228#0 TTTGTTCTCTCTTCCCTTCTTTTAATACGATCTCCTCCTCTTTTTTTTTTTTATTCTTTC 328 consensus_2228#1 CAAGCCGCGGGACCCC-------AACGCG-CCGCCGCCGCCGCCC-------AAGCCCTC 345 * *** ** ** * ** ** * * * ** consensus_2228#0 CTGGCGCTTCTTTTTCTTTATTTTTTTTCTGTGTTCGTTTGGTTTTACTGTTCTTTTTTT 388 consensus_2228#1 CT--CGCCACGCCCCCGCGGCCGCCCGCCCAAGTCCAAGGACCCCATCTCCGACGCCATC 403 ** *** * * * ** * ** * consensus_2228#0 TTTGTTTCTTGTTTCTCTTTGCTGTCTCGTCTTGTGTTTGTCTTTTGTGCCTTGTTATGT 448 consensus_2228#1 CCCAAGTCCCGCGGCCGCCCGCCCAAGAAGGCCAAGACGG-CTCCCGCCCCTCCTCCCGC 462 ** * * ** * * ** * *** * * consensus_2228#0 TGTGTGTGTTGGGGTTCAGCGCTTTGTTGTTTTTTTTTGTCTTGGTTTTTGTTGTTTTCT 508 consensus_2228#1 CGCCGGCGACG--GCTCCGCTC-------------------------------------- 482 * * * * * ** ** * consensus_2228#0 TCCTGGCGTCGTTGTGTGTGTGTCTTTGACTTTCGGTGTCGTGTTGTCGCTCTCCTTCCT 568 consensus_2228#1 ------------------------------------------------------------ consensus_2228#0 CTTGCCTTTTGCCCATTCTTTGTTCTGTCTCTCTTCTATCCCCCCAGTATTCTTTTGTGT 628 consensus_2228#1 ------------------------------------------------------------ consensus_2228#0 TTGTGCCGTTTCTTTCTGTTCTCTAGCTATGTCTTGTTTTATTTTTTCATTGCGTGTTTT 688 consensus_2228#1 ------------------------------------------------------------ consensus_2228#0 GTTTTTTTTCTGGTTTGTTATTTCTTCAGTTGTTCTCTCCTCTCGTGGTTTTCTTCTTGT 748 consensus_2228#1 ------------------------------------------------------------ consensus_2228#0 GTTTTGTTATATTTAGTTGTTGATT 773 consensus_2228#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||