These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 907 fasta sequence [ACTTTTTAGTCAATTTCACTCGTTATCCACGAACCAAACAAACCAACAGTCTTTTAGACTCTAGGGCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATCAGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGCCCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCACCTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTCACCTCGGCCACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACACCTCCAAGGTCGTCGACTGCAAGACCTGCAACGGCACCGCCGCCGTCCCTCCCCCGGCTGTCCCCACCAAGACCGGCTCCGTTCCCGTTGTCCCCGTCCNCGTCGGCACTGGCTCCGCCACCGTCTCCAAGCCTCCCTCTGTCCCCACCGCCGCTGGCCGACAGCTCGCCTTCTCGGTGCTGGTCTCGCCGTATCGTCGGCTTCCNGCGCCTCTGTAAATTCCCACCGTTTTAAACGGGCTATCGCCGCGACTAACCACCATGCAGCTTCGCGGTTTGTACGAGCTACTGCACTGGTTCCACGAATCCCATGGAGAGGGAANGATACACATCTGTTTGGCTTGGTTGACAATTTGATGCCTTGGATTGGCTGAGTTACAGGCCAACGGCCCCTGCATCGGGATGGGGGGGGGACCAAAATGTGGTGGGGGGATTTTGGGAAAACCCCACCGAGGTTTTTTTTTGTGTGTTTAAAAATAAATAAAAATNTGGGGAGTTAGGGGGGGCNTTTTGTATTGTCGATTATTAGGAATCTTATTCGTGGAGAGT] [+] EMBL AW155575 [ACTTTTTAGTCAATTTCACTCGTTATCCACGAACCAAACAAACCAACAGTCTTTTAGACTCTAGGGCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATCAGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGCCCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCACCTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTCACCTCGGCCACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACACCTCCAAGGTCGTCGACTGCAAGACCTGCAACGGCACCGCCGCCGTCCCTCCCCCGGCTGTCCCCACCAAGACCGGCTCCGTTCCCGTTGTCCCCGTCCNCGTCGGCACTGGCTCCGCCACCGTCTCCAAGCCTCCCTCTGTCCCCACCGCCGCTGGCCGACAGCTCGCCTTCTCGGTGCTGGTCTCGCCGTATCGTCGGCTTCCNGCGCCTCTGTAAATTCCCACCGTTTTAAACGGGCTATCGCCGCGACTAACCACCATGCAGCTTCGCGGTTTGTACGAGCTACTGCACTGGTTCCACGAATCCCATGGAGAGGGAANGATACACATCTGTTTGGCTTGGTTGACAATTTGATGCCTTGGATTGGCTGAGTTACAGGCCAACGGCCCCTGCATCGGGATGGGGGGGGGACCAAAATGTGGTGGGGGGATTTTGGGAAAACCCCACCGAGGTTTTTTTTTGTGTGTTTAAAAATAAATAAAAATNTGGGGAGTTAGGGGGGGCNTTTTGTATTGTCGATTATTAGGAATCTTATTCGTGGAGAGT] consensusID : consensus_2229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [ACTTTTTAGTCAATTTCACTCGGTATCCACGAACCAGAGAAACCAACAGTCTTTTAGACTCTAATCCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATCAGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGCCCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCACCTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTNACCTTGGGCACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACACCTCCAAGGTCGTCGACTGGCAGACCTGCAACGGNACCGNCGNCGTCCCTTCCCCGGCTGTGCCCACCAAGAACGGCTTCCGTTCCCGTTGGTCCCGGTTCCCCGTCGGCCTTGGTTCCGCAACCGTTTCAGGCTTTCCTTTGTCCCCACCGCCGCTGCCGACAAGCTTCCCCTTCTGGGTGCTTGTTCTCGCCGGTATCGGCCGCTTTGCCGCCCCTCCGGAAAATTTCCCAACCGTTTTTAACGGTTTAATGGGCGGTGATTAAACAACCATTCTAATCTCTGCGGTTTTGGTACCAGCTAGCCGCCACTGTTTTAAAGGAACCC] [+] EMBL AW155400 [ACTTTTTAGTCAATTTCACTCGGTATCCACGAACCAGAGAAACCAACAGTCTTTTAGACTCTAATCCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATCAGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGCCCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCACCTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTNACCTTGGGCACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACACCTCCAAGGTCGTCGACTGGCAGACCTGCAACGGNACCGNCGNCGTCCCTTCCCCGGCTGTGCCCACCAAGAACGGCTTCCGTTCCCGTTGGTCCCGGTTCCCCGTCGGCCTTGGTTCCGCAACCGTTTCAGGCTTTCCTTTGTCCCCACCGCCGCTGCCGACAAGCTTCCCCTTCTGGGTGCTTGTTCTCGCCGGTATCGGCCGCTTTGCCGCCCCTCCGGAAAATTTCCCAACCGTTTTTAACGGTTTAATGGGCGGTGATTAAACAACCATTCTAATCTCTGCGGTTTTGGTACCAGCTAGCCGCCACTGTTTTAAAGGAACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2229#0 ACTTTTTAGTCAATTTCACTCGTTATCCACGAACCAAACAAACCAACAGTCTTTTAGACT 60 consensus_2229#1 ACTTTTTAGTCAATTTCACTCGGTATCCACGAACCAGAGAAACCAACAGTCTTTTAGACT 60 ********************** ************* * ********************* consensus_2229#0 CTAGGGCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATC 120 consensus_2229#1 CTAATCCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATC 120 *** ****************************************************** consensus_2229#0 AGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGC 180 consensus_2229#1 AGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGC 180 ************************************************************ consensus_2229#0 CCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCAC 240 consensus_2229#1 CCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCAC 240 ************************************************************ consensus_2229#0 CTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTCACCTCGGC 300 consensus_2229#1 CTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTNACCTTGGG 300 *************************************************** **** ** consensus_2229#0 CACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACAC 360 consensus_2229#1 CACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACAC 360 ************************************************************ consensus_2229#0 CTCCAAGGTCGTCGACTGCAAGACCTGCAACGGCACCGCCGCCGTCCCTCCCCCGGCTGT 420 consensus_2229#1 CTCCAAGGTCGTCGACTGGCAGACCTGCAACGGNACCGNCGNCGTCCCTTCCCCGGCTGT 420 ****************** ************* **** ** ******* ********** consensus_2229#0 CCCCACCAAGACCGGCT-CCGTTCCCGTTGTCCCCG--TCCNCGTCGGCACTGGCTCCGC 477 consensus_2229#1 GCCCACCAAGAACGGCTTCCGTTCCCGTTGGTCCCGGTTCCCCGTCGGCCTTGGTTCCGC 480 ********** ***** ************ **** *** ******* *** ***** consensus_2229#0 CACCGTCTCCAAGCCTCCCTCTGTCCCCACCGCCGCTGGCCGACAG--CTCGCCTTCTCG 535 consensus_2229#1 AACCGT-TTCAGGCTTTCCTTTGTCCCCACCGCCGCTG-CCGACAAGCTTCCCCTTCTGG 538 ***** * ** ** * *** ***************** ****** ** ****** * consensus_2229#0 GTGCTGGT-CTCGCCG-TATCGTCGGCTTC-CNGCGCCTCTGTAAA---TTCCCACCGTT 589 consensus_2229#1 GTGCTTGTTCTCGCCGGTATCGGCCGCTTTGCCGCCCCTCCGGAAAATTTCCCAACCGTT 598 ***** ** ******* ***** * **** * ** **** * *** * ** ****** consensus_2229#0 TTAAACGGGCTATCG--CCGCGACTAACCA-CCATGC--AGCTTCGCGGTTT--GTACGA 642 consensus_2229#1 TTTAACGGTTTAATGGGCGGTGATTAAACAACCATTCTAATCTCTGCGGTTTTGGTACCA 658 ** ***** ** * * * ** *** ** **** * * ** ******* **** * consensus_2229#0 GCTA--CTGCACTGGTTCCACGAATCCCATGGAGAGGGAANGATACACATCTGTTTGGCT 700 consensus_2229#1 GCTAGCCGCCACTGTTTTAAAGGAACCC-------------------------------- 686 **** * ***** ** * * * *** consensus_2229#0 TGGTTGACAATTTGATGCCTTGGATTGGCTGAGTTACAGGCCAACGGCCCCTGCATCGGG 760 consensus_2229#1 ------------------------------------------------------------ consensus_2229#0 ATGGGGGGGGGACCAAAATGTGGTGGGGGGATTTTGGGAAAACCCCACCGAGGTTTTTTT 820 consensus_2229#1 ------------------------------------------------------------ consensus_2229#0 TTGTGTGTTTAAAAATAAATAAAAATNTGGGGAGTTAGGGGGGGCNTTTTGTATTGTCGA 880 consensus_2229#1 ------------------------------------------------------------ consensus_2229#0 TTATTAGGAATCTTATTCGTGGAGAGT 907 consensus_2229#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||