cluster # 2229

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Oryza sativa
cluster # 2229 cluster # 2229 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2229#0 length = 907 sequences # 1

consensus_2229#1 length = 686 sequences # 1

consensusID : consensus_2229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 907
fasta sequence

                              [ACTTTTTAGTCAATTTCACTCGTTATCCACGAACCAAACAAACCAACAGTCTTTTAGACTCTAGGGCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATCAGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGCCCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCACCTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTCACCTCGGCCACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACACCTCCAAGGTCGTCGACTGCAAGACCTGCAACGGCACCGCCGCCGTCCCTCCCCCGGCTGTCCCCACCAAGACCGGCTCCGTTCCCGTTGTCCCCGTCCNCGTCGGCACTGGCTCCGCCACCGTCTCCAAGCCTCCCTCTGTCCCCACCGCCGCTGGCCGACAGCTCGCCTTCTCGGTGCTGGTCTCGCCGTATCGTCGGCTTCCNGCGCCTCTGTAAATTCCCACCGTTTTAAACGGGCTATCGCCGCGACTAACCACCATGCAGCTTCGCGGTTTGTACGAGCTACTGCACTGGTTCCACGAATCCCATGGAGAGGGAANGATACACATCTGTTTGGCTTGGTTGACAATTTGATGCCTTGGATTGGCTGAGTTACAGGCCAACGGCCCCTGCATCGGGATGGGGGGGGGACCAAAATGTGGTGGGGGGATTTTGGGAAAACCCCACCGAGGTTTTTTTTTGTGTGTTTAAAAATAAATAAAAATNTGGGGAGTTAGGGGGGGCNTTTTGTATTGTCGATTATTAGGAATCTTATTCGTGGAGAGT]

[+] EMBL AW155575             [ACTTTTTAGTCAATTTCACTCGTTATCCACGAACCAAACAAACCAACAGTCTTTTAGACTCTAGGGCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATCAGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGCCCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCACCTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTCACCTCGGCCACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACACCTCCAAGGTCGTCGACTGCAAGACCTGCAACGGCACCGCCGCCGTCCCTCCCCCGGCTGTCCCCACCAAGACCGGCTCCGTTCCCGTTGTCCCCGTCCNCGTCGGCACTGGCTCCGCCACCGTCTCCAAGCCTCCCTCTGTCCCCACCGCCGCTGGCCGACAGCTCGCCTTCTCGGTGCTGGTCTCGCCGTATCGTCGGCTTCCNGCGCCTCTGTAAATTCCCACCGTTTTAAACGGGCTATCGCCGCGACTAACCACCATGCAGCTTCGCGGTTTGTACGAGCTACTGCACTGGTTCCACGAATCCCATGGAGAGGGAANGATACACATCTGTTTGGCTTGGTTGACAATTTGATGCCTTGGATTGGCTGAGTTACAGGCCAACGGCCCCTGCATCGGGATGGGGGGGGGACCAAAATGTGGTGGGGGGATTTTGGGAAAACCCCACCGAGGTTTTTTTTTGTGTGTTTAAAAATAAATAAAAATNTGGGGAGTTAGGGGGGGCNTTTTGTATTGTCGATTATTAGGAATCTTATTCGTGGAGAGT]




>consensus_2229#0
ACTTTTTAGTCAATTTCACTCGTTATCCACGAACCAAACAAACCAACAGTCTTTTAGACT
CTAGGGCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATC
AGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGC
CCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCAC
CTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTCACCTCGGC
CACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACAC
CTCCAAGGTCGTCGACTGCAAGACCTGCAACGGCACCGCCGCCGTCCCTCCCCCGGCTGT
CCCCACCAAGACCGGCTCCGTTCCCGTTGTCCCCGTCCNCGTCGGCACTGGCTCCGCCAC
CGTCTCCAAGCCTCCCTCTGTCCCCACCGCCGCTGGCCGACAGCTCGCCTTCTCGGTGCT
GGTCTCGCCGTATCGTCGGCTTCCNGCGCCTCTGTAAATTCCCACCGTTTTAAACGGGCT
ATCGCCGCGACTAACCACCATGCAGCTTCGCGGTTTGTACGAGCTACTGCACTGGTTCCA
CGAATCCCATGGAGAGGGAANGATACACATCTGTTTGGCTTGGTTGACAATTTGATGCCT
TGGATTGGCTGAGTTACAGGCCAACGGCCCCTGCATCGGGATGGGGGGGGGACCAAAATG
TGGTGGGGGGATTTTGGGAAAACCCCACCGAGGTTTTTTTTTGTGTGTTTAAAAATAAAT
AAAAATNTGGGGAGTTAGGGGGGGCNTTTTGTATTGTCGATTATTAGGAATCTTATTCGT
GGAGAGT

consensusID : consensus_2229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [ACTTTTTAGTCAATTTCACTCGGTATCCACGAACCAGAGAAACCAACAGTCTTTTAGACTCTAATCCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATCAGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGCCCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCACCTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTNACCTTGGGCACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACACCTCCAAGGTCGTCGACTGGCAGACCTGCAACGGNACCGNCGNCGTCCCTTCCCCGGCTGTGCCCACCAAGAACGGCTTCCGTTCCCGTTGGTCCCGGTTCCCCGTCGGCCTTGGTTCCGCAACCGTTTCAGGCTTTCCTTTGTCCCCACCGCCGCTGCCGACAAGCTTCCCCTTCTGGGTGCTTGTTCTCGCCGGTATCGGCCGCTTTGCCGCCCCTCCGGAAAATTTCCCAACCGTTTTTAACGGTTTAATGGGCGGTGATTAAACAACCATTCTAATCTCTGCGGTTTTGGTACCAGCTAGCCGCCACTGTTTTAAAGGAACCC]

[+] EMBL AW155400             [ACTTTTTAGTCAATTTCACTCGGTATCCACGAACCAGAGAAACCAACAGTCTTTTAGACTCTAATCCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATCAGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGCCCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCACCTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTNACCTTGGGCACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACACCTCCAAGGTCGTCGACTGGCAGACCTGCAACGGNACCGNCGNCGTCCCTTCCCCGGCTGTGCCCACCAAGAACGGCTTCCGTTCCCGTTGGTCCCGGTTCCCCGTCGGCCTTGGTTCCGCAACCGTTTCAGGCTTTCCTTTGTCCCCACCGCCGCTGCCGACAAGCTTCCCCTTCTGGGTGCTTGTTCTCGCCGGTATCGGCCGCTTTGCCGCCCCTCCGGAAAATTTCCCAACCGTTTTTAACGGTTTAATGGGCGGTGATTAAACAACCATTCTAATCTCTGCGGTTTTGGTACCAGCTAGCCGCCACTGTTTTAAAGGAACCC]




>consensus_2229#1
ACTTTTTAGTCAATTTCACTCGGTATCCACGAACCAGAGAAACCAACAGTCTTTTAGACT
CTAATCCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATC
AGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGC
CCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCAC
CTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTNACCTTGGG
CACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACAC
CTCCAAGGTCGTCGACTGGCAGACCTGCAACGGNACCGNCGNCGTCCCTTCCCCGGCTGT
GCCCACCAAGAACGGCTTCCGTTCCCGTTGGTCCCGGTTCCCCGTCGGCCTTGGTTCCGC
AACCGTTTCAGGCTTTCCTTTGTCCCCACCGCCGCTGCCGACAAGCTTCCCCTTCTGGGT
GCTTGTTCTCGCCGGTATCGGCCGCTTTGCCGCCCCTCCGGAAAATTTCCCAACCGTTTT
TAACGGTTTAATGGGCGGTGATTAAACAACCATTCTAATCTCTGCGGTTTTGGTACCAGC
TAGCCGCCACTGTTTTAAAGGAACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2229#0      ACTTTTTAGTCAATTTCACTCGTTATCCACGAACCAAACAAACCAACAGTCTTTTAGACT 60
consensus_2229#1      ACTTTTTAGTCAATTTCACTCGGTATCCACGAACCAGAGAAACCAACAGTCTTTTAGACT 60
                      ********************** ************* * *********************

consensus_2229#0      CTAGGGCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATC 120
consensus_2229#1      CTAATCCTCCAAGCTCCTTTTTAAGAGTTTTTAATTCACTCCTTTAAACGACCCTAAATC 120
                      ***   ******************************************************

consensus_2229#0      AGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGC 180
consensus_2229#1      AGTCAAAATGCAGTTCTCCGTCGCCGCTGTCCTTGCCTTCGCCGCTGCCGGCGTTTCGGC 180
                      ************************************************************

consensus_2229#0      CCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCAC 240
consensus_2229#1      CCACGCCTTCAACAACGGCACCCAGACCTACGTCACCGAGGTCGTCACTGCCTACACCAC 240
                      ************************************************************

consensus_2229#0      CTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTCACCTCGGC 300
consensus_2229#1      CTTCTGCCCTGTGGCCACTGAGATCACCGCCGGCGGCAAGACCTACACCGTNACCTTGGG 300
                      *************************************************** **** ** 

consensus_2229#0      CACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACAC 360
consensus_2229#1      CACCACCCTGACCATCACCGACTGCGCTTCTGGCTGCACCGTCACCAAGCCCGTCTACAC 360
                      ************************************************************

consensus_2229#0      CTCCAAGGTCGTCGACTGCAAGACCTGCAACGGCACCGCCGCCGTCCCTCCCCCGGCTGT 420
consensus_2229#1      CTCCAAGGTCGTCGACTGGCAGACCTGCAACGGNACCGNCGNCGTCCCTTCCCCGGCTGT 420
                      ******************  ************* **** ** ******* **********

consensus_2229#0      CCCCACCAAGACCGGCT-CCGTTCCCGTTGTCCCCG--TCCNCGTCGGCACTGGCTCCGC 477
consensus_2229#1      GCCCACCAAGAACGGCTTCCGTTCCCGTTGGTCCCGGTTCCCCGTCGGCCTTGGTTCCGC 480
                       ********** ***** ************  ****  *** *******  *** *****

consensus_2229#0      CACCGTCTCCAAGCCTCCCTCTGTCCCCACCGCCGCTGGCCGACAG--CTCGCCTTCTCG 535
consensus_2229#1      AACCGT-TTCAGGCTTTCCTTTGTCCCCACCGCCGCTG-CCGACAAGCTTCCCCTTCTGG 538
                       ***** * ** ** * *** ***************** ******    ** ****** *

consensus_2229#0      GTGCTGGT-CTCGCCG-TATCGTCGGCTTC-CNGCGCCTCTGTAAA---TTCCCACCGTT 589
consensus_2229#1      GTGCTTGTTCTCGCCGGTATCGGCCGCTTTGCCGCCCCTCCGGAAAATTTCCCAACCGTT 598
                      ***** ** ******* ***** * ****  * ** **** * ***   * ** ******

consensus_2229#0      TTAAACGGGCTATCG--CCGCGACTAACCA-CCATGC--AGCTTCGCGGTTT--GTACGA 642
consensus_2229#1      TTTAACGGTTTAATGGGCGGTGATTAAACAACCATTCTAATCTCTGCGGTTTTGGTACCA 658
                      ** *****  **  *  * * ** *** ** **** *  * **  *******  **** *

consensus_2229#0      GCTA--CTGCACTGGTTCCACGAATCCCATGGAGAGGGAANGATACACATCTGTTTGGCT 700
consensus_2229#1      GCTAGCCGCCACTGTTTTAAAGGAACCC-------------------------------- 686
                      ****  *  ***** **  * * * ***                                

consensus_2229#0      TGGTTGACAATTTGATGCCTTGGATTGGCTGAGTTACAGGCCAACGGCCCCTGCATCGGG 760
consensus_2229#1      ------------------------------------------------------------
                                                                                  

consensus_2229#0      ATGGGGGGGGGACCAAAATGTGGTGGGGGGATTTTGGGAAAACCCCACCGAGGTTTTTTT 820
consensus_2229#1      ------------------------------------------------------------
                                                                                  

consensus_2229#0      TTGTGTGTTTAAAAATAAATAAAAATNTGGGGAGTTAGGGGGGGCNTTTTGTATTGTCGA 880
consensus_2229#1      ------------------------------------------------------------
                                                                                  

consensus_2229#0      TTATTAGGAATCTTATTCGTGGAGAGT 907
consensus_2229#1      ---------------------------