These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1902 fasta sequence [CCCAGGGTTATTGCAGCCATTGGAGGTACCTTCTCAATCATGGCAAGTAATTACTATGGATTTTATCGAAGGTTTACCCAGATCGGCTTCATTTGACTGTATACTGGTTATTGTGGATAAATTCTCTAAGTTTGCTCATTTTTTTACCCCTGAAACACCCCTTTACTGCCTTTGGAGTGGCTCAGCTTTTCATGGAACATATTCATAGTACACATGGTTTACCTCAAGCTATTGTATCTGACCGTGATCGAGTGTTCACTAGTTCTCTTTGGAAGGAATTGTTTCGCCGAGCTGGTACTCAACTCCGAATGAGTTCTTCGTATCACCCACAATCGGATGGACAAACAGAGCGTGTGAATCAATGTGTGGAAATGTTTTTGCGCTGCTTTGTTCATTCTTGTCCTTCTCGGTGGAAGCATTGGCTGGCATTGGCTCAATGTTGGCACAATACGTCATTTCATTCAGCCTTGGGTATGACTCCTTTTGAAGTATTATTTGGGCACAAACCTCGTTACTTTGGATTATCCACTTCATCTGTTGATGCTCCTGGAGATCTTGCAAGTTGGTTAAGTGAGCGAAATGACATGAATACTTTGATTCATCATCATTTGTTGCGAGCTCAGCAACGGATGAAGAGCCAAGCTGATTCGAAGCGATCTGAGCGTTGTTTTGCGGTTGGTGATTGGGTGTTCATGAAATTACAACCATATATTCAACAATCAGTTATGACTCGATCTAACAGGAAGTTATCCTTCAAATATTATGGTCCATTTCAAGTCTTACAACGAATTGGATTGGTGGCTTACAGATTACAGTTGCCTGCTCACAGCTTAATACACCCTGTCGTCCATGTGTCTCAGCTCAAGAAGGCTCTCGCACCATCTGAAGCAGTTCAGCCTTCTTTGCCTGTGTTGAATCCTGATGCTGGTCATTTAGCGATTCCAATCAAAATTCTGGATCATCGTTCGATTCGTCGAGGTTCCAAGATGATCAAGCAAGTTCTAATTCGTTGGTCCGGTGTGTCTTCTTCTGCTGACACCTGGGAGAGTTTAGATGAAATGCAAGCTAAGTTTCCAGCTGCACCAGCCTGGGGACAGGCTGAAACTCAAGGAGGGAGGAATGTTACGGCATCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAAGTCCACACCAACCCAAAGTATATGGGCTGTGATTGGTCTAATAGTTGAGGAAGTCTATAAATACTAGAAGGATCTTCTAGAGGCGGGTGTGGTAATTGAATCTAACTTCTATCTGAAGAAATCATTCCTCCTCCTAACTTTGTTTCCTTCTTCCTCTGCTCTGAAATGCTCTGTTCTGTTCTGTTCTTCCTCCTCATCCCCAATTTCATCTGTGATTCGATCTAGGGTTCGTAACAGAAGCTTGCGGGGAGTCGGGACAGCGTTGAAGGTAGAGCGGAGGAGAGCGGCCTGCGGCCCGCGTGGGAAGCGGCACGGCGGACGGTGATCAGCCTTGGCGAGAGGAGGAGGGGGACGTGGGCTTCGATTGGAGGAGCAGGTGGTGGTATCTCGCTAGCATTGGCCGAATGGAATGGACATGGACACGCCTGCTCTCTTTTTAAAGGCTGCCATCCTATACTTTTATACGTACATATACGCCGCAATCTTCTTGAATGGCAAGAAACCTCTCTCAACCGACGGATCATGAATCAACGGTGGAGATCCCTTCAGTTGATCAGTAATATACCTGTGCTTCTATCTGCTATGTTTTTGGAAAACTAGGAAGGTGGCCCGCGCGCATGCGTGGGCACTTATATTATTGAAAGATAAGATTATTGTTGTTCAAAAATTTTGTCTCATAGATTAAGGGCAAACTAAAGCTCGGATAATGTCA] [+] EMBL AK062587 [CCCAGGGTTATTGCAGCCATTGGAGGTACCTTCTCAATCATGGCAAGTAATTACTATGGATTTTATCGAAGGTTTACCCAGATCGGCTTCATTTGACTGTATACTGGTTATTGTGGATAAATTCTCTAAGTTTGCTCATTTTTTTACCCCTGAAACACCCCTTTACTGCCTTTGGAGTGGCTCAGCTTTTCATGGAACATATTCATAGTACACATGGTTTACCTCAAGCTATTGTATCTGACCGTGATCGAGTGTTCACTAGTTCTCTTTGGAAGGAATTGTTTCGCCGAGCTGGTACTCAACTCCGAATGAGTTCTTCGTATCACCCACAATCGGATGGACAAACAGAGCGTGTGAATCAATGTGTGGAAATGTTTTTGCGCTGCTTTGTTCATTCTTGTCCTTCTCGGTGGAAGCATTGGCTGGCATTGGCTCAATGTTGGCACAATACGTCATTTCATTCAGCCTTGGGTATGACTCCTTTTGAAGTATTATTTGGGCACAAACCTCGTTACTTTGGATTATCCACTTCATCTGTTGATGCTCCTGGAGATCTTGCAAGTTGGTTAAGTGAGCGAAATGACATGAATACTTTGATTCATCATCATTTGTTGCGAGCTCAGCAACGGATGAAGAGCCAAGCTGATTCGAAGCGATCTGAGCGTTGTTTTGCGGTTGGTGATTGGGTGTTCATGAAATTACAACCATATATTCAACAATCAGTTATGACTCGATCTAACAGGAAGTTATCCTTCAAATATTATGGTCCATTTCAAGTCTTACAACGAATTGGATTGGTGGCTTACAGATTACAGTTGCCTGCTCACAGCTTAATACACCCTGTCGTCCATGTGTCTCAGCTCAAGAAGGCTCTCGCACCATCTGAAGCAGTTCAGCCTTCTTTGCCTGTGTTGAATCCTGATGCTGGTCATTTAGCGATTCCAATCAAAATTCTGGATCATCGTTCGATTCGTCGAGGTTCCAAGATGATCAAGCAAGTTCTAATTCGTTGGTCCGGTGTGTCTTCTTCTGCTGACACCTGGGAGAGTTTAGATGAAATGCAAGCTAAGTTTCCAGCTGCACCAGCCTGGGGACAGGCTGAAACTCAAGGAGGGAGGAATGTTACGGCATCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAAGTCCACACCAACCCAAAGTATATGGGCTGTGATTGGTCTAATAGTTGAGGAAGTCTATAAATACTAGAAGGATCTTCTAGAGGCGGGTGTGGTAATTGAATCTAACTTCTATCTGAAGAAATCATTCCTCCTCCTAACTTTGTTTCCTTCTTCCTCTGCTCTGAAATGCTCTGTTCTGTTCTGTTCTTCCTCCTCATCCCCAATTTCATCTGTGATTCGATCTAGGGTTCGTAACAGAAGCTTGCGGGGAGTCGGGACAGCGTTGAAGGTAGAGCGGAGGAGAGCGGCCTGCGGCCCGCGTGGGAAGCGGCACGGCGGACGGTGATCAGCCTTGGCGAGAGGAGGAGGGGGACGTGGGCTTCGATTGGAGGAGCAGGTGGTGGTATCTCGCTAGCATTGGCCGAATGGAATGGACATGGACACGCCTGCTCTCTTTTTAAAGGCTGCCATCCTATACTTTTATACGTACATATACGCCGCAATCTTCTTGAATGGCAAGAAACCTCTCTCAACCGACGGATCATGAATCAACGGTGGAGATCCCTTCAGTTGATCAGTAATATACCTGTGCTTCTATCTGCTATGTTTTTGGAAAACTAGGAAGGTGGCCCGCGCGCATGCGTGGGCACTTATATTATTGAAAGATAAGATTATTGTTGTTCAAAAATTTTGTCTCATAGATTAAGGGCAAACTAAAGCTCGGATAATGTCA] consensusID : consensus_223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [AGACAAGAGGGTAAAGAGACCGAAGAGGAAAAGGCAAGTGAGGGTGACCTCCGTGCCGGCGGATGACGGCTACAGCTGGAGGAAGTACGGGCGGAAGAACGTCCTCGGCTTCAGTTACCTAAGGGGTTACTACAGGTGTGCCACCAAGGGCTGCCAGGCGTCCAAGCAAGTGCAGCGCCACGACGACGGCTTGCTCTTCGACGCCACATACTTGGGTGAGCACACCTGCGCTGATCAGCCTCAGGCAGCGCACTCCAGCGACCAAGTACAGGTCACATTATGGCCGCCTGCCGTAAGCCCAGAGCAACCGCTCACACCGCAATCCGGGCTCGAGCAGAGCTCCACTGTCACTGTTACTGCATCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAAGTCCACACCAACCCAAAGTATATGGGCTGTGATTGGGTTACTGGTTGAGGAAGTCTATAAATACTAGAAGGATCTTCTAGAGGCGTGCGTTGTAATTGAATCAAAACTTCTATCTGAAGAAAATCATTCCTCCTCCTAAAAAAAAAAAA] [-] EMBL CA760141 [AGACAAGAGGGTAAAGAGACCGAAGAGGAAAAGGCAAGTGAGGGTGACCTCCGTGCCGGCGGATGACGGCTACAGCTGGAGGAAGTACGGGCGGAAGAACGTCCTCGGCTTCAGTTACCTAAGGGGTTACTACAGGTGTGCCACCAAGGGCTGCCAGGCGTCCAAGCAAGTGCAGCGCCACGACGACGGCTTGCTCTTCGACGCCACATACTTGGGTGAGCACACCTGCGCTGATCAGCCTCAGGCAGCGCACTCCAGCGACCAAGTACAGGTCACATTATGGCCGCCTGCCGTAAGCCCAGAGCAACCGCTCACACCGCAATCCGGGCTCGAGCAGAGCTCCACTGTCACTGTTACTGCATCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAAGTCCACACCAACCCAAAGTATATGGGCTGTGATTGGGTTACTGGTTGAGGAAGTCTATAAATACTAGAAGGATCTTCTAGAGGCGTGCGTTGTAATTGAATCAAAACTTCTATCTGAAGAAAATCATTCCTCCTCCTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_223#0 CCCAGGGTTATTGCAGCCATTGGAGGTACCTTCTCAATCATGGCAAGTAATTACTATGGA 60 consensus_223#1 ------------------------------------------------------------ consensus_223#0 TTTTATCGAAGGTTTACCCAGATCGGCTTCATTTGACTGTATACTGGTTATTGTGGATAA 120 consensus_223#1 ------------------------------------------------------------ consensus_223#0 ATTCTCTAAGTTTGCTCATTTTTTTACCCCTGAAACACCCCTTTACTGCCTTTGGAGTGG 180 consensus_223#1 ------------------------------------------------------------ consensus_223#0 CTCAGCTTTTCATGGAACATATTCATAGTACACATGGTTTACCTCAAGCTATTGTATCTG 240 consensus_223#1 ------------------------------------------------------------ consensus_223#0 ACCGTGATCGAGTGTTCACTAGTTCTCTTTGGAAGGAATTGTTTCGCCGAGCTGGTACTC 300 consensus_223#1 ------------------------------------------------------------ consensus_223#0 AACTCCGAATGAGTTCTTCGTATCACCCACAATCGGATGGACAAACAGAGCGTGTGAATC 360 consensus_223#1 ------------------------------------------------------------ consensus_223#0 AATGTGTGGAAATGTTTTTGCGCTGCTTTGTTCATTCTTGTCCTTCTCGGTGGAAGCATT 420 consensus_223#1 ------------------------------------------------------------ consensus_223#0 GGCTGGCATTGGCTCAATGTTGGCACAATACGTCATTTCATTCAGCCTTGGGTATGACTC 480 consensus_223#1 ------------------------------------------------------------ consensus_223#0 CTTTTGAAGTATTATTTGGGCACAAACCTCGTTACTTTGGATTATCCACTTCATCTGTTG 540 consensus_223#1 ------------------------------------------------------------ consensus_223#0 ATGCTCCTGGAGATCTTGCAAGTTGGTTAAGTGAGCGAAATGACATGAATACTTTGATTC 600 consensus_223#1 ------------------------------------------------------------ consensus_223#0 ATCATCATTTGTTGCGAGCTCAGCAACGGATGAAGAGCCAAGCTGATTCGAAGCGATCTG 660 consensus_223#1 ------------------------------------------------------------ consensus_223#0 AGCGTTGTTTTGCGGTTGGTGATTGGGTGTTCATGAAATTACAACCATATATTCAACAAT 720 consensus_223#1 ------------------------------------------------------------ consensus_223#0 CAGTTATGACTCGATCTAACAGGAAGTTATCCTTCAAATATTATGGTCCATTTCAAGTCT 780 consensus_223#1 --------------------------------------------------AGACAAGAGG 10 **** consensus_223#0 TACAACGAATTGGATTGGTGGCTTACAGATTACAGTTGCCTGCTCACAGCTTAATACACC 840 consensus_223#1 GTAAAGAGACCGAAGAGGAAAAG-GCAAGTGAGGGTGACCTCCGTGCCGGCGGATGACGG 69 ** * * * ** ** * * ** *** * * * ** consensus_223#0 CTGTCGTCCATGTGTCTCAGCTCAAGAAGGCTCTCGCACCATCTGAAGCAGTTCAGCCTT 900 consensus_223#1 CTACAGCTGGAGGAAGTACGGGCGGAAGAACGTCCTCGGCTTCAGTTACCTAAGGGGTTA 129 ** * * * * * * * * * * ** * * * * consensus_223#0 CTTTGCCTGTGTTGAATCCTGATGCTGGTCATTTA-GCGATTCCAAT--CAAAATTCTGG 957 consensus_223#1 CTACAGGTGTGCCACCAAGGGCTGCCAGGCGTCCAAGCAAGTGCAGCGCCACGACGACGG 189 ** **** * *** * * * * ** * * ** ** * ** consensus_223#0 ATCATCGTTCGATTCGTCGAGGTTCCAAGATGATCAAGCAAGTTCTAATTCGT-TGGTCC 1016 consensus_223#1 CTTGCTCTTCGA--CGCC-ACATACTTGGGTGAGCACACCTGCGCTGATCAGCCTCAGGC 246 * ***** ** * * * * * *** ** * * ** ** * * * consensus_223#0 GGTGTGTCTTCTTCTGCTGACACCTGGGAGAGTTTAGATGA--AATGCAAGCT--AAGTT 1072 consensus_223#1 AGCGCACTCCAGCGACCAAGTACAGGTCACATTATGGCCGCCTGCCGTAAGCCCAGAGCA 306 * * * ** * * * * * * * * **** ** consensus_223#0 TCCAGCTGCACC--AGCCTGGGGACAGGCTGAAACTCAAGGAGGGAGGAATGTTACGGCA 1130 consensus_223#1 ACCGCTCACACCGCAATCCGGGCTCGAGCAGAGCTCCACTGTC-----ACTGTTACTGCA 361 ** **** * * *** * ** ** ** * * ****** *** consensus_223#0 TCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAA 1190 consensus_223#1 TCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAA 421 ************************************************************ consensus_223#0 GTCCACACCAACCCAAAGTATATGGGCTGTGATTGGTCTAATAGTTGAGGAAGTCTATAA 1250 consensus_223#1 GTCCACACCAACCCAAAGTATATGGGCTGTGATTGGGTTACTGGTTGAGGAAGTCTATAA 481 ************************************ ** * ***************** consensus_223#0 ATACTAGAAGGATCTTCTAGAGGCGGGTGTGGTAATTGAATCTAA-CTTCTATCTGAAGA 1309 consensus_223#1 ATACTAGAAGGATCTTCTAGAGGCGTGCGTTGTAATTGAATCAAAACTTCTATCTGAAGA 541 ************************* * ** *********** ** ************** consensus_223#0 AA-TCATTCCTCCTCCTAACTTTGTTTCCTTCTTCCTCTGCTCTGAAATGCTCTGTTCTG 1368 consensus_223#1 AAATCATTCCTCCTCCTAAAAAAAAAAAA------------------------------- 570 ** **************** consensus_223#0 TTCTGTTCTTCCTCCTCATCCCCAATTTCATCTGTGATTCGATCTAGGGTTCGTAACAGA 1428 consensus_223#1 ------------------------------------------------------------ consensus_223#0 AGCTTGCGGGGAGTCGGGACAGCGTTGAAGGTAGAGCGGAGGAGAGCGGCCTGCGGCCCG 1488 consensus_223#1 ------------------------------------------------------------ consensus_223#0 CGTGGGAAGCGGCACGGCGGACGGTGATCAGCCTTGGCGAGAGGAGGAGGGGGACGTGGG 1548 consensus_223#1 ------------------------------------------------------------ consensus_223#0 CTTCGATTGGAGGAGCAGGTGGTGGTATCTCGCTAGCATTGGCCGAATGGAATGGACATG 1608 consensus_223#1 ------------------------------------------------------------ consensus_223#0 GACACGCCTGCTCTCTTTTTAAAGGCTGCCATCCTATACTTTTATACGTACATATACGCC 1668 consensus_223#1 ------------------------------------------------------------ consensus_223#0 GCAATCTTCTTGAATGGCAAGAAACCTCTCTCAACCGACGGATCATGAATCAACGGTGGA 1728 consensus_223#1 ------------------------------------------------------------ consensus_223#0 GATCCCTTCAGTTGATCAGTAATATACCTGTGCTTCTATCTGCTATGTTTTTGGAAAACT 1788 consensus_223#1 ------------------------------------------------------------ consensus_223#0 AGGAAGGTGGCCCGCGCGCATGCGTGGGCACTTATATTATTGAAAGATAAGATTATTGTT 1848 consensus_223#1 ------------------------------------------------------------ consensus_223#0 GTTCAAAAATTTTGTCTCATAGATTAAGGGCAAACTAAAGCTCGGATAATGTCA 1902 consensus_223#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||