cluster # 225

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Oryza sativa
cluster # 225 cluster # 225 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_225#0 length = 1476 sequences # 1

consensus_225#1 length = 422 sequences # 1

consensusID : consensus_225#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1476
fasta sequence

                              [TCGTTTCGCACGCGTGTGACGACCGCCCATGCCGCCGCCGTTCCTCCTTTCCCGGCCTCGCCAGCTCGCCTTGCCCTCGCATTGGTTCCGCAGCTCCCACCTCTCCCCTGTCGTTCTTTGTCCGCCGAGGCACTGAGCCGCTGCCGTCGTTGACCTCCCGGCTGCTCAATCCATGGAGAGGCGGACTGACGGAGGTTAGTGGCGCCGTCACGCCGCTGAACCGCCAAGCGCCGCTGGTCGCCGGCGCCGGGAGCCCAAGGCCCCTGGCCGGTTGGCCCTAGTTGATTGCCGCTCCTCCCCCTTGCCCTGCCTGTGCCAGCGGCTGCCTTAGTAGCCTATGACGAGTAGGACTACCCAACAAAAATTTCCTGGCTACGCCACTGGTCATGGCAACATACTACTACGTATGTTGCAGCTACTGCAGCCACCTTCTCGCGGTTTATACCGACGGTGAACGCGCGGTTCGACTACGGCGTGTCCATCTTCGTCATGACGTACAGCTTCGTTGCCGTGTCGGGGTACCGCGTCGACGACCTGGCGGCGCTGGTGCTGGACAGGATAGCCACCATCGCCATCGGCGTCATCATCTGCCTCGCCGTCTGCACGCTCATCTGCCCGGTGTGGGCCGGCCAGGAGCTGGGCCTCCTCACCGCTCGCAACATGGAGAAGCTCGCGTCCGCCGTGGAGGCCTGCGTCGAGGACTACTTCGCCGACCCCACGGCGGCGGCGGCCAGGTCGGAGGGGTACAAGAGCGTGCTCGGCTCCAAGGCGTCCGAGGACTCAGCAGGCCGCGCGATGGGAGGCCCCCGCACGGGCGGTTCGGCTTCCGACACCCGTACGACCAGTACGCCAAGGTCGGCGCCGCGATGCGCCAGTGCGCGTGCTGCGTCGAGGCGCTCATCAGCTGCGCCGGCGCGTCGTCGCGCCAGCGAGCCCCGCCCCCGCGTCTCCTCGGCGATGCGTGTACGAGGGTTGGCGCGTGGTGCGCGCGGGTGCTCAAGGAGGCGTCCGCCTGCGTCGCCACGATGACGACGTCCCGGGGCCTTGGCTTCGCCGTGGCGGAGATGGACGCCGCCGTGCGCGAGCTGCAGAGCGACCTGCGGGCTCTCCCGCCCATCCTAGCCGAGGAAGCGTCGGAGACGTCGCTGGCAGAGGTCATCAGCACTTCACCGTTGCTCTGCTGCTAAGCGAGGATCGAGGGCGTCGTCCACGCCGTCGGCACGCTGGCGACACTCGCGGGGTTCAAGCCGGCCGACGATGCTGACGGTACCGATAAGCCAGAAGCCGAGGTGGCACGTTCGGACGAGTCACCGCCTCACCGGAAAATCTGGCAAACACGCACCTTGAACAGAGTGAACATTTTAGCAAGTGACAAAAAGGGGTACAAGCTGCTAGTAGGTGTCAAAGCAGAACATTTTAGCAGGATTCCAATTTCAAAACCGTGGTGCAGAGGTGCAGTGCTGCACCAGTACGTAT]

[+] EMBL AK108650             [TCGTTTCGCACGCGTGTGACGACCGCCCATGCCGCCGCCGTTCCTCCTTTCCCGGCCTCGCCAGCTCGCCTTGCCCTCGCATTGGTTCCGCAGCTCCCACCTCTCCCCTGTCGTTCTTTGTCCGCCGAGGCACTGAGCCGCTGCCGTCGTTGACCTCCCGGCTGCTCAATCCATGGAGAGGCGGACTGACGGAGGTTAGTGGCGCCGTCACGCCGCTGAACCGCCAAGCGCCGCTGGTCGCCGGCGCCGGGAGCCCAAGGCCCCTGGCCGGTTGGCCCTAGTTGATTGCCGCTCCTCCCCCTTGCCCTGCCTGTGCCAGCGGCTGCCTTAGTAGCCTATGACGAGTAGGACTACCCAACAAAAATTTCCTGGCTACGCCACTGGTCATGGCAACATACTACTACGTATGTTGCAGCTACTGCAGCCACCTTCTCGCGGTTTATACCGACGGTGAACGCGCGGTTCGACTACGGCGTGTCCATCTTCGTCATGACGTACAGCTTCGTTGCCGTGTCGGGGTACCGCGTCGACGACCTGGCGGCGCTGGTGCTGGACAGGATAGCCACCATCGCCATCGGCGTCATCATCTGCCTCGCCGTCTGCACGCTCATCTGCCCGGTGTGGGCCGGCCAGGAGCTGGGCCTCCTCACCGCTCGCAACATGGAGAAGCTCGCGTCCGCCGTGGAGGCCTGCGTCGAGGACTACTTCGCCGACCCCACGGCGGCGGCGGCCAGGTCGGAGGGGTACAAGAGCGTGCTCGGCTCCAAGGCGTCCGAGGACTCAGCAGGCCGCGCGATGGGAGGCCCCCGCACGGGCGGTTCGGCTTCCGACACCCGTACGACCAGTACGCCAAGGTCGGCGCCGCGATGCGCCAGTGCGCGTGCTGCGTCGAGGCGCTCATCAGCTGCGCCGGCGCGTCGTCGCGCCAGCGAGCCCCGCCCCCGCGTCTCCTCGGCGATGCGTGTACGAGGGTTGGCGCGTGGTGCGCGCGGGTGCTCAAGGAGGCGTCCGCCTGCGTCGCCACGATGACGACGTCCCGGGGCCTTGGCTTCGCCGTGGCGGAGATGGACGCCGCCGTGCGCGAGCTGCAGAGCGACCTGCGGGCTCTCCCGCCCATCCTAGCCGAGGAAGCGTCGGAGACGTCGCTGGCAGAGGTCATCAGCACTTCACCGTTGCTCTGCTGCTAAGCGAGGATCGAGGGCGTCGTCCACGCCGTCGGCACGCTGGCGACACTCGCGGGGTTCAAGCCGGCCGACGATGCTGACGGTACCGATAAGCCAGAAGCCGAGGTGGCACGTTCGGACGAGTCACCGCCTCACCGGAAAATCTGGCAAACACGCACCTTGAACAGAGTGAACATTTTAGCAAGTGACAAAAAGGGGTACAAGCTGCTAGTAGGTGTCAAAGCAGAACATTTTAGCAGGATTCCAATTTCAAAACCGTGGTGCAGAGGTGCAGTGCTGCACCAGTACGTAT]




>consensus_225#0
TCGTTTCGCACGCGTGTGACGACCGCCCATGCCGCCGCCGTTCCTCCTTTCCCGGCCTCG
CCAGCTCGCCTTGCCCTCGCATTGGTTCCGCAGCTCCCACCTCTCCCCTGTCGTTCTTTG
TCCGCCGAGGCACTGAGCCGCTGCCGTCGTTGACCTCCCGGCTGCTCAATCCATGGAGAG
GCGGACTGACGGAGGTTAGTGGCGCCGTCACGCCGCTGAACCGCCAAGCGCCGCTGGTCG
CCGGCGCCGGGAGCCCAAGGCCCCTGGCCGGTTGGCCCTAGTTGATTGCCGCTCCTCCCC
CTTGCCCTGCCTGTGCCAGCGGCTGCCTTAGTAGCCTATGACGAGTAGGACTACCCAACA
AAAATTTCCTGGCTACGCCACTGGTCATGGCAACATACTACTACGTATGTTGCAGCTACT
GCAGCCACCTTCTCGCGGTTTATACCGACGGTGAACGCGCGGTTCGACTACGGCGTGTCC
ATCTTCGTCATGACGTACAGCTTCGTTGCCGTGTCGGGGTACCGCGTCGACGACCTGGCG
GCGCTGGTGCTGGACAGGATAGCCACCATCGCCATCGGCGTCATCATCTGCCTCGCCGTC
TGCACGCTCATCTGCCCGGTGTGGGCCGGCCAGGAGCTGGGCCTCCTCACCGCTCGCAAC
ATGGAGAAGCTCGCGTCCGCCGTGGAGGCCTGCGTCGAGGACTACTTCGCCGACCCCACG
GCGGCGGCGGCCAGGTCGGAGGGGTACAAGAGCGTGCTCGGCTCCAAGGCGTCCGAGGAC
TCAGCAGGCCGCGCGATGGGAGGCCCCCGCACGGGCGGTTCGGCTTCCGACACCCGTACG
ACCAGTACGCCAAGGTCGGCGCCGCGATGCGCCAGTGCGCGTGCTGCGTCGAGGCGCTCA
TCAGCTGCGCCGGCGCGTCGTCGCGCCAGCGAGCCCCGCCCCCGCGTCTCCTCGGCGATG
CGTGTACGAGGGTTGGCGCGTGGTGCGCGCGGGTGCTCAAGGAGGCGTCCGCCTGCGTCG
CCACGATGACGACGTCCCGGGGCCTTGGCTTCGCCGTGGCGGAGATGGACGCCGCCGTGC
GCGAGCTGCAGAGCGACCTGCGGGCTCTCCCGCCCATCCTAGCCGAGGAAGCGTCGGAGA
CGTCGCTGGCAGAGGTCATCAGCACTTCACCGTTGCTCTGCTGCTAAGCGAGGATCGAGG
GCGTCGTCCACGCCGTCGGCACGCTGGCGACACTCGCGGGGTTCAAGCCGGCCGACGATG
CTGACGGTACCGATAAGCCAGAAGCCGAGGTGGCACGTTCGGACGAGTCACCGCCTCACC
GGAAAATCTGGCAAACACGCACCTTGAACAGAGTGAACATTTTAGCAAGTGACAAAAAGG
GGTACAAGCTGCTAGTAGGTGTCAAAGCAGAACATTTTAGCAGGATTCCAATTTCAAAAC
CGTGGTGCAGAGGTGCAGTGCTGCACCAGTACGTAT

consensusID : consensus_225#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [TCTCCTGGCCTCGCCAGTTCGCCTTGCCCTCACATCGGCTCCACAGCTCCCACCTCTCCCTGTCGTTCTTTGCCCGCCAAGGCGCCGAGCCACGCGCTGCCGTCGTTTGACCTCCCGGTTGCTCAGTCCATGGAGAGGCGGAGGGTGGAGGTGCCGTCACGCCGAGGCACCACGCCGCCACCGGCCGTGAGTTAGGCAACAAACTGCCAAGGCGTCGCTGGCTGCCGGCGCCGGGAGCCCAAGGCCCCTGGCCGGTTGGTCCTGGTTGATTGCCACTCCCTCCCCCTCGCCATTTGTGAATCAGTGGTTAGTGGATGACTGAATGTGATGTTGACTTGCTATGAACTGTGATTTGGTGAATTAGAGCTATGAACTATGATTTGTGATACTGCTAATTGGTGAATTTGAACTATGAACTGCGA]

[+] EMBL AK121576             [TCTCCTGGCCTCGCCAGTTCGCCTTGCCCTCACATCGGCTCCACAGCTCCCACCTCTCCCTGTCGTTCTTTGCCCGCCAAGGCGCCGAGCCACGCGCTGCCGTCGTTTGACCTCCCGGTTGCTCAGTCCATGGAGAGGCGGAGGGTGGAGGTGCCGTCACGCCGAGGCACCACGCCGCCACCGGCCGTGAGTTAGGCAACAAACTGCCAAGGCGTCGCTGGCTGCCGGCGCCGGGAGCCCAAGGCCCCTGGCCGGTTGGTCCTGGTTGATTGCCACTCCCTCCCCCTCGCCATTTGTGAATCAGTGGTTAGTGGATGACTGAATGTGATGTTGACTTGCTATGAACTGTGATTTGGTGAATTAGAGCTATGAACTATGATTTGTGATACTGCTAATTGGTGAATTTGAACTATGAACTGCGA]




>consensus_225#1
TCTCCTGGCCTCGCCAGTTCGCCTTGCCCTCACATCGGCTCCACAGCTCCCACCTCTCCC
TGTCGTTCTTTGCCCGCCAAGGCGCCGAGCCACGCGCTGCCGTCGTTTGACCTCCCGGTT
GCTCAGTCCATGGAGAGGCGGAGGGTGGAGGTGCCGTCACGCCGAGGCACCACGCCGCCA
CCGGCCGTGAGTTAGGCAACAAACTGCCAAGGCGTCGCTGGCTGCCGGCGCCGGGAGCCC
AAGGCCCCTGGCCGGTTGGTCCTGGTTGATTGCCACTCCCTCCCCCTCGCCATTTGTGAA
TCAGTGGTTAGTGGATGACTGAATGTGATGTTGACTTGCTATGAACTGTGATTTGGTGAA
TTAGAGCTATGAACTATGATTTGTGATACTGCTAATTGGTGAATTTGAACTATGAACTGC
GA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_225#0      TCGTTTCGCACGCGTGTGACGACCGCCCATGCCGCCGCCGTTCCTCCTTTCCCGGCCTCG 60
consensus_225#1      -----------------------------------------------TCTCCTGGCCTCG 13
                                                                    * *** *******

consensus_225#0      CCAGCTCGCCTTGCCCTCGCATTGGTTCCGCAGCTCCCACCTCTCCCCTGTCGTTCTTTG 120
consensus_225#1      CCAGTTCGCCTTGCCCTCACATCGGCTCCACAGCTCCCACCTCTCCC-TGTCGTTCTTTG 72
                     **** ************* *** ** *** ***************** ************

consensus_225#0      TCCGCCGAGGCACTGAGCC----GCTGCCGTCGTT-GACCTCCCGGCTGCTCAATCCATG 175
consensus_225#1      CCCGCCAAGGCGCCGAGCCACGCGCTGCCGTCGTTTGACCTCCCGGTTGCTCAGTCCATG 132
                      ***** **** * *****    ************ ********** ****** ******

consensus_225#0      GAGAGGCGGACTGACGGAGGT-TAGTGGCGCCG-----TCACGCCGCTG----------- 218
consensus_225#1      GAGAGGCGGAG-GGTGGAGGTGCCGTCACGCCGAGGCACCACGCCGCCACCGGCCGTGAG 191
                     **********  *  ******   **  *****      ********             

consensus_225#0      ----------AACCGCCAAG-CGCCGCTGGTCGCCGGCGCCGGGAGCCCAAGGCCCCTGG 267
consensus_225#1      TTAGGCAACAAACTGCCAAGGCGTCGCTGGCTGCCGGCGCCGGGAGCCCAAGGCCCCTGG 251
                               *** ****** ** ******  ****************************

consensus_225#0      CCGGTTGGCCCTAGTTGATTGCCGCTCC-TCCCCCTTGCCCTGCCTGTGCCAGCGGCTGC 326
consensus_225#1      CCGGTTGGTCCTGGTTGATTGCCACTCCCTCCCCCTCGCCATTTGTGAATCAGTGGTTAG 311
                     ******** *** ********** **** ******* *** *   **   *** ** *  

consensus_225#0      CTTAGTAGCCTATGACGAGTAGGACTACCCAACAAAAATTTCCTGGCTACGCCACTGGTC 386
consensus_225#1      -TGGATGACTGAATGTGATGTTGACTTGCTATGAACTGTGATTTGGTGA--------ATT 362
                      *   *  *  *    **    ****  * *  **   *    ***  *         * 

consensus_225#0      ATGGCAACATACTACTACGTATGTTGCAGCTACTGCAGCCACCTTCTCGCGGTTTATACC 446
consensus_225#1      AGAGCTATGAACTATGATTTGTGATACTGCTAAT-TGGTGAATTT-----GAACTATG-- 414
                     *  ** *   ****  *  * ** * * **** *   *  *  **     *   ***   

consensus_225#0      GACGGTGAACGCGCGGTTCGACTACGGCGTGTCCATCTTCGTCATGACGTACAGCTTCGT 506
consensus_225#1      AACTGCGA---------------------------------------------------- 422
                      ** * **                                                    

consensus_225#0      TGCCGTGTCGGGGTACCGCGTCGACGACCTGGCGGCGCTGGTGCTGGACAGGATAGCCAC 566
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      CATCGCCATCGGCGTCATCATCTGCCTCGCCGTCTGCACGCTCATCTGCCCGGTGTGGGC 626
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      CGGCCAGGAGCTGGGCCTCCTCACCGCTCGCAACATGGAGAAGCTCGCGTCCGCCGTGGA 686
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      GGCCTGCGTCGAGGACTACTTCGCCGACCCCACGGCGGCGGCGGCCAGGTCGGAGGGGTA 746
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      CAAGAGCGTGCTCGGCTCCAAGGCGTCCGAGGACTCAGCAGGCCGCGCGATGGGAGGCCC 806
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      CCGCACGGGCGGTTCGGCTTCCGACACCCGTACGACCAGTACGCCAAGGTCGGCGCCGCG 866
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      ATGCGCCAGTGCGCGTGCTGCGTCGAGGCGCTCATCAGCTGCGCCGGCGCGTCGTCGCGC 926
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      CAGCGAGCCCCGCCCCCGCGTCTCCTCGGCGATGCGTGTACGAGGGTTGGCGCGTGGTGC 986
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      GCGCGGGTGCTCAAGGAGGCGTCCGCCTGCGTCGCCACGATGACGACGTCCCGGGGCCTT 1046
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      GGCTTCGCCGTGGCGGAGATGGACGCCGCCGTGCGCGAGCTGCAGAGCGACCTGCGGGCT 1106
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      CTCCCGCCCATCCTAGCCGAGGAAGCGTCGGAGACGTCGCTGGCAGAGGTCATCAGCACT 1166
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      TCACCGTTGCTCTGCTGCTAAGCGAGGATCGAGGGCGTCGTCCACGCCGTCGGCACGCTG 1226
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      GCGACACTCGCGGGGTTCAAGCCGGCCGACGATGCTGACGGTACCGATAAGCCAGAAGCC 1286
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      GAGGTGGCACGTTCGGACGAGTCACCGCCTCACCGGAAAATCTGGCAAACACGCACCTTG 1346
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      AACAGAGTGAACATTTTAGCAAGTGACAAAAAGGGGTACAAGCTGCTAGTAGGTGTCAAA 1406
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      GCAGAACATTTTAGCAGGATTCCAATTTCAAAACCGTGGTGCAGAGGTGCAGTGCTGCAC 1466
consensus_225#1      ------------------------------------------------------------
                                                                                 

consensus_225#0      CAGTACGTAT 1476
consensus_225#1      ----------