These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [TTATCATCAAGTACCATTCCCACCGAGTCTAAAAATGGCATCATTTCCATGTTAAGAATCACGGCGCGTTGAATCTACTATGTATTTTTTAATAAATACAGTGAGTACTTTAATGTCAAGGCCGAACGTTCAATATCTTTAAAGAAATACCCAACGTCTTTCTGAATAAGGTCAAAGCGGCTATCGGCACGTTTTACCGCGCGCTCCGATACCAGATGATAGGTAGTGATGAAAAAAAGACCTATAAATGACAGTGCTG] [+] EMBL CF306202 [TTATCATCAAGTACCATTCCCACCGAGTCTAAAAATGGCATCATTTCCATGTTAAGAATCACGGCGCGTTGAATCTACTATGTATTTTTTAATAAATACAGTGAGTACTTTAATGTCAAGGCCGAACGTTCAATATCTTTAAAGAAATACCCAACGTCTTTCTGAATAAGGTCAAAGCGGCTATCGGCACGTTTTACCGCGCGCTCCGATACCAGATGATAGGTAGTGATGAAAAAAAGACCTATAAATGACAGTGCTG] consensusID : consensus_2257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [CTCACTGTATTTATCAAAAAATGCAGAGGAGATTCAACGCGCCGAGAACCTTAGAATGGAAATGATGCCATTTTTAGACTCGGTGGGACTGGTACTAGATGATAATAAATATTATCTTTTTTCGCGGAAGGCCATAGATGAAATTAAAGCTAATCGTCACGAACAAGGAAATGGACCGCTTGTCGACGAGTCAGG] [+] EMBL CF307512 [CTCACTGTATTTATCAAAAAATGCAGAGGAGATTCAACGCGCCGAGAACCTTAGAATGGAAATGATGCCATTTTTAGACTCGGTGGGACTGGTACTAGATGATAATAAATATTATCTTTTTTCGCGGAAGGCCATAGATGAAATTAAAGCTAATCGTCACGAACAAGGAAATGGACCGCTTGTCGACGAGTCAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2257#0 TTATCATCAAGTACCATTCCCACCGAGTCTAAAAATGGCATCATTTCCATGTTAAGAATC 60 consensus_2257#1 ------------------------------------CTCACTGTATTTATCAAAAAATGC 24 ** * * ** ** * * consensus_2257#0 ACGGCGCGTTGAATCTACTATGTATTTTTTAATAAATACAGTGAGTACTTTAATGTCAAG 120 consensus_2257#1 AGAGGAGATTCAACGCGCCGAGAACCTTAGAATGGAAATGATGCCATTTTTAGACTC--G 82 * * ** ** * * * ** *** * * ** **** ** * consensus_2257#0 GCCGAACGTTCAATATCTTTAAAGAAATACCCAACGTCTTTCTGAATAAGGTCAAAGCGG 180 consensus_2257#1 GTGGGACTGGTACTAGATGATAATAAATATT--ATCTTTTTTCGCGGAAGGCCATAGATG 140 * * ** * ** * ** ***** * * *** * **** ** ** * consensus_2257#0 CTATCGGCACGTTTTACCGCGCGCTCCGATACCAGATGATAGGTAGTGATGAAAAAAAGA 240 consensus_2257#1 AAATTAAAGCTAATCGTCACGAACAAGGAAATGGACCGCTTGTCGACGAGTCAGG----- 195 ** * * * ** * ** * * * * ** * consensus_2257#0 CCTATAAATGACAGTGCTG 259 consensus_2257#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||