cluster # 2268

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Oryza sativa
cluster # 2268 cluster # 2268 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2268#0 length = 480 sequences # 1

consensus_2268#1 length = 143 sequences # 1

consensusID : consensus_2268#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [TCCCAAACTCCCGCCGCCGCCGCCGCCATCGATGGAGTCCGCCCCGGCCAGCCGCGTACGCCGCGAGGACGTGGCCCGCGCGGTGGCGGCGCTCCTCCGGTGGCTCCAGCACCACCCCACCCCGGCGCCGGAGCCCATCTACCTCCTCGTCACCCTCAAGCGCGCCCCCGCCCGCCGCTTCGAGCACACCCTCCGCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCGCCTCCCGGCGGACCTGCCCGACGGCGGCAACGGCGAGGCGGAAGACGCGAAGAGGAAGAGCGTGGCGGTGAAGGAGCAGGGGATTGTGAAGAGGAGGAAGAAGAGTAGCAGCGTCAGTGTGGGCGGTGATCAGTTGTAAACCTGTACTAAAATACTTCAGTGTTGAATTCGAATTCGAATTCTGTCTTTCCCTTGCATTTCGATGCTTAATTGATCGCCAAGAACAATTCAATGAACGAT]

[+] EMBL AK105358             [TCCCAAACTCCCGCCGCCGCCGCCGCCATCGATGGAGTCCGCCCCGGCCAGCCGCGTACGCCGCGAGGACGTGGCCCGCGCGGTGGCGGCGCTCCTCCGGTGGCTCCAGCACCACCCCACCCCGGCGCCGGAGCCCATCTACCTCCTCGTCACCCTCAAGCGCGCCCCCGCCCGCCGCTTCGAGCACACCCTCCGCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCGCCTCCCGGCGGACCTGCCCGACGGCGGCAACGGCGAGGCGGAAGACGCGAAGAGGAAGAGCGTGGCGGTGAAGGAGCAGGGGATTGTGAAGAGGAGGAAGAAGAGTAGCAGCGTCAGTGTGGGCGGTGATCAGTTGTAAACCTGTACTAAAATACTTCAGTGTTGAATTCGAATTCGAATTCTGTCTTTCCCTTGCATTTCGATGCTTAATTGATCGCCAAGAACAATTCAATGAACGAT]




>consensus_2268#0
TCCCAAACTCCCGCCGCCGCCGCCGCCATCGATGGAGTCCGCCCCGGCCAGCCGCGTACG
CCGCGAGGACGTGGCCCGCGCGGTGGCGGCGCTCCTCCGGTGGCTCCAGCACCACCCCAC
CCCGGCGCCGGAGCCCATCTACCTCCTCGTCACCCTCAAGCGCGCCCCCGCCCGCCGCTT
CGAGCACACCCTCCGCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCG
CCTCCCGGCGGACCTGCCCGACGGCGGCAACGGCGAGGCGGAAGACGCGAAGAGGAAGAG
CGTGGCGGTGAAGGAGCAGGGGATTGTGAAGAGGAGGAAGAAGAGTAGCAGCGTCAGTGT
GGGCGGTGATCAGTTGTAAACCTGTACTAAAATACTTCAGTGTTGAATTCGAATTCGAAT
TCTGTCTTTCCCTTGCATTTCGATGCTTAATTGATCGCCAAGAACAATTCAATGAACGAT

consensusID : consensus_2268#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 143
fasta sequence

                              [CCCCGCCGCCGCTTCGAGCACACCCTCCTCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCGCCTCCCNNCCTGCCCGACGACATCGATCCGTCCCCTCGCCCNNTGGTGTCCCGCCGNNNNNTGTGTGTG]

[+] EMBL AA749882             [CCCCGCCGCCGCTTCGAGCACACCCTCCTCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCGCCTCCCNNCCTGCCCGACGACATCGATCCGTCCCCTCGCCCNNTGGTGTCCCGCCGNNNNNTGTGTGTG]




>consensus_2268#1
CCCCGCCGCCGCTTCGAGCACACCCTCCTCCTCCCGCGCTCGCCGTTCCCGTCCATCTCC
CTCGTCTCCGACCGCCTCCCNNCCTGCCCGACGACATCGATCCGTCCCCTCGCCCNNTGG
TGTCCCGCCGNNNNNTGTGTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2268#0      TCCCAAACTCCCGCCGCCGCCGCCGCCATCGATGGAGTCCGCCCCGGCCAGCCGCGTACG 60
consensus_2268#1      ------------------------------------------------------------
                                                                                  

consensus_2268#0      CCGCGAGGACGTGGCCCGCGCGGTGGCGGCGCTCCTCCGGTGGCTCCAGCACCACCCCAC 120
consensus_2268#1      ------------------------------------------------------------
                                                                                  

consensus_2268#0      CCCGGCGCCGGAGCCCATCTACCTCCTCGTCACCCTCAAGCGCGCCCCCGCCCGCCGCTT 180
consensus_2268#1      ---------------------------------------------CCCCGCC-GCCGCTT 14
                                                                   ******* *******

consensus_2268#0      CGAGCACACCCTCCGCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCG 240
consensus_2268#1      CGAGCACACCCTCCTCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCG 74
                      ************** *********************************************

consensus_2268#0      CCTCCCGGCGGACCTGCCCGACGGCGGCAACGGCGAGGCGGAAGACGCGAAGAGGAAGAG 300
consensus_2268#1      CCTCCCN----NCCTGCCCGACG---ACATCGATCCGTCCCCTCGCCCNNTGGTGTCCCG 127
                      ******      ***********    ** **    * *      * *   *  *    *

consensus_2268#0      CGTGGCGGTGAAGGAGCAGGGGATTGTGAAGAGGAGGAAGAAGAGTAGCAGCGTCAGTGT 360
consensus_2268#1      CCGNNNNNTGTGTGTG-------------------------------------------- 143
                      *       **   * *                                            

consensus_2268#0      GGGCGGTGATCAGTTGTAAACCTGTACTAAAATACTTCAGTGTTGAATTCGAATTCGAAT 420
consensus_2268#1      ------------------------------------------------------------
                                                                                  

consensus_2268#0      TCTGTCTTTCCCTTGCATTTCGATGCTTAATTGATCGCCAAGAACAATTCAATGAACGAT 480
consensus_2268#1      ------------------------------------------------------------