cluster # 2276

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Oryza sativa
cluster # 2276 cluster # 2276 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2276#0 length = 647 sequences # 1

consensus_2276#1 length = 477 sequences # 1

consensusID : consensus_2276#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [TGGGCTGGGCCGAAGATCGGTAGCCTACCATGCCCTCGCGGTCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGAACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGATTTTCTTATCCATTCAGGTAATCATCAGTTCATCATCCTATTCGCATTCCTTCTCTCCTTTGTTTTCTGTATCGACATTTTTTTCCCGCTTCCTCGTATGCAACTAGAAATCTCTGTAATTAATCCATTAAGTAGAAGTTCGCCAATACCAAACCTGCGATCGTACAAGTGAATGTAATGCAGTCTGCGCCACTGATCTATTTCGCCCGCCAACTGTTCGACGAAATGGCAAAGCCAAAGAGCTGAAAAGTTCGACAATATGTCTGAAAAGTTGATGTCAGTTGTTTCTTCCCTGAGACGGCCAAGATCTGGCGTAGGATAACTGAAGGCTGTTCCCTGAAGTTTTCTATGGATGTTTGTTTTCTACCAAGAGATGTTCTTTGAGCTGCTTTTAGAGGTGCTTTTGCTTAGTTTCGTTTTGTCTCCTGTTGTCTGTAATCTTTTGGGGTCTCAAACCTTGTGTTAGTC]

[+] EMBL AK108959             [TGGGCTGGGCCGAAGATCGGTAGCCTACCATGCCCTCGCGGTCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGAACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGATTTTCTTATCCATTCAGGTAATCATCAGTTCATCATCCTATTCGCATTCCTTCTCTCCTTTGTTTTCTGTATCGACATTTTTTTCCCGCTTCCTCGTATGCAACTAGAAATCTCTGTAATTAATCCATTAAGTAGAAGTTCGCCAATACCAAACCTGCGATCGTACAAGTGAATGTAATGCAGTCTGCGCCACTGATCTATTTCGCCCGCCAACTGTTCGACGAAATGGCAAAGCCAAAGAGCTGAAAAGTTCGACAATATGTCTGAAAAGTTGATGTCAGTTGTTTCTTCCCTGAGACGGCCAAGATCTGGCGTAGGATAACTGAAGGCTGTTCCCTGAAGTTTTCTATGGATGTTTGTTTTCTACCAAGAGATGTTCTTTGAGCTGCTTTTAGAGGTGCTTTTGCTTAGTTTCGTTTTGTCTCCTGTTGTCTGTAATCTTTTGGGGTCTCAAACCTTGTGTTAGTC]




>consensus_2276#0
TGGGCTGGGCCGAAGATCGGTAGCCTACCATGCCCTCGCGGTCGCGGACACGCGGCGGCG
ACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGA
ACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGAT
TTTCTTATCCATTCAGGTAATCATCAGTTCATCATCCTATTCGCATTCCTTCTCTCCTTT
GTTTTCTGTATCGACATTTTTTTCCCGCTTCCTCGTATGCAACTAGAAATCTCTGTAATT
AATCCATTAAGTAGAAGTTCGCCAATACCAAACCTGCGATCGTACAAGTGAATGTAATGC
AGTCTGCGCCACTGATCTATTTCGCCCGCCAACTGTTCGACGAAATGGCAAAGCCAAAGA
GCTGAAAAGTTCGACAATATGTCTGAAAAGTTGATGTCAGTTGTTTCTTCCCTGAGACGG
CCAAGATCTGGCGTAGGATAACTGAAGGCTGTTCCCTGAAGTTTTCTATGGATGTTTGTT
TTCTACCAAGAGATGTTCTTTGAGCTGCTTTTAGAGGTGCTTTTGCTTAGTTTCGTTTTG
TCTCCTGTTGTCTGTAATCTTTTGGGGTCTCAAACCTTGTGTTAGTC

consensusID : consensus_2276#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [ATGCCCTCGCGGTCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGAACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGATTTTCTTATCCATTCAGGTGCTTCAGGACACACTGCACAGCGGACTTAGGGGTGAGGGAGGGCGCCGGCTAGCCACAGAAATCATGTGAATCAGGGCTGACAGTGGGAATATCCTGCAGGCAGGCTGCAGCTTGCAGCAGCAGAATTGCTTAGGAGAGCGATACAGTTTAGTCGGTACACACAGGGGTAGATTGGTGTAAGATAGCTTTCTGAATTCTGAAGCCCTCTACTTGATGGAAATAGTCATTATCTAAATGTTGGAAACTTTGAATGGTTCTAAAGTGTATTTGAGAAGTTGGATGATATATTTCTGAAACTAGTATCTTT]

[+] EMBL AK063658             [ATGCCCTCGCGGTCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGAACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGATTTTCTTATCCATTCAGGTGCTTCAGGACACACTGCACAGCGGACTTAGGGGTGAGGGAGGGCGCCGGCTAGCCACAGAAATCATGTGAATCAGGGCTGACAGTGGGAATATCCTGCAGGCAGGCTGCAGCTTGCAGCAGCAGAATTGCTTAGGAGAGCGATACAGTTTAGTCGGTACACACAGGGGTAGATTGGTGTAAGATAGCTTTCTGAATTCTGAAGCCCTCTACTTGATGGAAATAGTCATTATCTAAATGTTGGAAACTTTGAATGGTTCTAAAGTGTATTTGAGAAGTTGGATGATATATTTCTGAAACTAGTATCTTT]




>consensus_2276#1
ATGCCCTCGCGGTCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGTTTGCCG
GCGGGAGATTTGAAGCCGGGTGTCATCCGGAACCTGCCCACCTTTTCCCGCCTGCTAATC
AACAAATGGCCTCCTGTGTTCCGCCAACGATTTTCTTATCCATTCAGGTGCTTCAGGACA
CACTGCACAGCGGACTTAGGGGTGAGGGAGGGCGCCGGCTAGCCACAGAAATCATGTGAA
TCAGGGCTGACAGTGGGAATATCCTGCAGGCAGGCTGCAGCTTGCAGCAGCAGAATTGCT
TAGGAGAGCGATACAGTTTAGTCGGTACACACAGGGGTAGATTGGTGTAAGATAGCTTTC
TGAATTCTGAAGCCCTCTACTTGATGGAAATAGTCATTATCTAAATGTTGGAAACTTTGA
ATGGTTCTAAAGTGTATTTGAGAAGTTGGATGATATATTTCTGAAACTAGTATCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2276#0      TGGGCTGGGCCGAAGATCGGTAGCCTACCATGCCCTCGCGGTCGCGGACACGCGGCGGCG 60
consensus_2276#1      -----------------------------ATGCCCTCGCGGTCGCGGACACGCGGCGGCG 31
                                                   *******************************

consensus_2276#0      ACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGA 120
consensus_2276#1      ACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGA 91
                      ************************************************************

consensus_2276#0      ACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGAT 180
consensus_2276#1      ACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGAT 151
                      ************************************************************

consensus_2276#0      TTTCTTATCCATTCAGGTAATCATCAGTTCATCATCCTATTCGCATTCCTTCTCTCCTTT 240
consensus_2276#1      TTTCTTATCCATTCAGGTGCTTCAGGACACACTGCACAGCGGACTTAGGGGTGAGGGAGG 211
                      ******************  *        **     *      * *              

consensus_2276#0      GTTTTCTGTATCGACATTTTTTTCCCGCTTCCTCGTATGCAACTAGAAATCTCTGTAATT 300
consensus_2276#1      GCGCCGGCTAGCCACAGAAATCATGTGAATCAGGGCTGACAGTGGGAATATCCTGCAGGC 271
                      *       ** * ***    *     *  **   *    **    ***    *** *   

consensus_2276#0      AATCCATTAAGTAGAAGTTCGCCAATACCAAACCTGCGATCGTACAAGTGAATGTAATGC 360
consensus_2276#1      AG--------GCTGCAGCTTGC-AGCAGCAGAATTGC--TTAGGAGAGCGA-TACAGTTT 319
                      *         *  * ** * ** *  * ** *  ***  *      ** ** *  * *  

consensus_2276#0      AGTCTGCGC-CACTGATCTATTTCGCCCGCCAACTGTTCGACGAAATGGCAAAGCCAAAG 419
consensus_2276#1      AGTCGGTACACACAGGGGTAGATTGGT-GTAAGATAGCTTTCTGAATTCTGAAGCCCTCT 378
                      **** *  * *** *   **  * *   *  *  *      *  ***    *****    

consensus_2276#0      AGCTGAAAAGTTCGACAATATGTCTGAAAAGTTGATGTCAGTTGTTTCTTCCCTGAGACG 479
consensus_2276#1      ACTTGATGGAAATAGTCAT-TATCT-AAATGTTGGAAACTTTGAATGGTTCTAAAGTGTA 436
                      *  ***           ** * *** *** ****    *  *   *  ***         

consensus_2276#0      GCCAAGATCTGGCGTAGGATAA--CTGAAGGCTGTTCCCTGAAGTTTTCTATGGATGTTT 537
consensus_2276#1      TTTGAGAAGTTGGATGATATATTTCTGAAACTAGTATCTTT------------------- 477
                          ***  * *  *   ***   *****    **  * *                    

consensus_2276#0      GTTTTCTACCAAGAGATGTTCTTTGAGCTGCTTTTAGAGGTGCTTTTGCTTAGTTTCGTT 597
consensus_2276#1      ------------------------------------------------------------
                                                                                  

consensus_2276#0      TTGTCTCCTGTTGTCTGTAATCTTTTGGGGTCTCAAACCTTGTGTTAGTC 647
consensus_2276#1      --------------------------------------------------