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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1976 fasta sequence
[ATTGTTTTGTTGGGTCGGCGGCGGCGGGTGAGAGTGGAGAATGATGATGGCTCTCCGCCGCGCCGTCGGAATTGGCTCCGCCGCCGCCCTCCGCTCTGCCGCCTACCTCCGCCGCGCCTCCCCCTCGCCGGCGCGGCCCCATCCCCTCGTCCCTCCACCGCCTGCCGCCCGAACCTTCGCCGCCCCGCCCCAGGTGATGAAGAGGAGCACCAAGGACGACGACGACGATGGCCCTCGGATCAACAACGACATCACCTCTCCCTTTGTTCGACTCGTCACTGACCAAGGCCATAGTGTTGTCCCCAGGCACGAAGCTCTTCAGCTTGCGGCCAGGATGGACTTGGACTTGGTCGAGGTCCACAGAAAATCAGACCCTCCTGTCTGTAAAATCATGGATTTTCACAAAGAGAAGTATAAGAAAGACGTTAAGGAGAAAGAACGCCTAAAAACTAAGTCTGCTATTGTCTTACGCGGTGGGGAGAACAAAGAAGTGCGGTTTAAGGGTAAAACAGAACTAAAAGACTTGAAGGTGAAAGCAGATGGAATCACCAGATTAATGGAGCGAGGTTACAGGGTGAAGTGCATGGCGATGCCCTCAGGTAATGAAGAAGAAGATTTAGGAGGGCCACTATCTCGGTTGTTAGGACTTATACAAGATGTCTGCATAGTGGAAAGTGGCCCACATTTGGACTCGAAGCATGCATACGTTATTGTTAGGCATGTGAAGTTTGCAACAAAGAAAGCTGGAAAGAAAGCTAGCAAGGCCATAGAAGATGTAGGCAAAGGTGCCCGCAAGAATGCCTCTGAATTGTCAACTGTTACTGCCGATAGTGGAGATGAGACAAATGATTGTGGAAATGGGGCCATCTCAGATCAAATGGACAACGCTCCTGCTTACGTCTCCAATGAATTTTCCATGCAGAAAGATGCACATGATAGAGGCTCTAGAAGGGAGTTGAGTTGGTCGAAATCGAACCCGGGCAACTACGGTGAAAACATGCAAAATGTTGATGCTGGGGCACACAGAATTAGCTCTAGTCAGCGGGCAGCACAAACCTCAGAGGGTGGGTTTGGTTCCAATAATGTAAAATCTGGTATGGAAAAGCAAGAAAAGGCTAATGAAGATGTGGTACCTGCAGAAACCAACAGATACGCCAGCCGAAGACAGCAGATAAGAGGAGATAACCAGGGTTTGAGCCAAGATAGATCCCCGCAAGGTCATAGAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGACTACCAAAGACCTCTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATTACCACAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGGCCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTACTCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTCTGAGTTGGGGAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTTTAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAAGCCTATAAACAGCAGGTCTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCTCGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATTATTCATTCAGCCTGAGCATATCTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGCTTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTATCATTTGATTGGAAGAATCACACCTGTTTAGACTAGAATAGCCCTTTTACTTGTCAGGTTGATCGAATAGTGAAAAATAATGTCATGAGTGGTCGGATCCATTTGATTGTGATAGC]
[+] EMBL AK068038 [ATTGTTTTGTTGGGTCGGCGGCGGCGGGTGAGAGTGGAGAATGATGATGGCTCTCCGCCGCGCCGTCGGAATTGGCTCCGCCGCCGCCCTCCGCTCTGCCGCCTACCTCCGCCGCGCCTCCCCCTCGCCGGCGCGGCCCCATCCCCTCGTCCCTCCACCGCCTGCCGCCCGAACCTTCGCCGCCCCGCCCCAGGTGATGAAGAGGAGCACCAAGGACGACGACGACGATGGCCCTCGGATCAACAACGACATCACCTCTCCCTTTGTTCGACTCGTCACTGACCAAGGCCATAGTGTTGTCCCCAGGCACGAAGCTCTTCAGCTTGCGGCCAGGATGGACTTGGACTTGGTCGAGGTCCACAGAAAATCAGACCCTCCTGTCTGTAAAATCATGGATTTTCACAAAGAGAAGTATAAGAAAGACGTTAAGGAGAAAGAACGCCTAAAAACTAAGTCTGCTATTGTCTTACGCGGTGGGGAGAACAAAGAAGTGCGGTTTAAGGGTAAAACAGAACTAAAAGACTTGAAGGTGAAAGCAGATGGAATCACCAGATTAATGGAGCGAGGTTACAGGGTGAAGTGCATGGCGATGCCCTCAGGTAATGAAGAAGAAGATTTAGGAGGGCCACTATCTCGGTTGTTAGGACTTATACAAGATGTCTGCATAGTGGAAAGTGGCCCACATTTGGACTCGAAGCATGCATACGTTATTGTTAGGCATGTGAAGTTTGCAACAAAGAAAGCTGGAAAGAAAGCTAGCAAGGCCATAGAAGATGTAGGCAAAGGTGCCCGCAAGAATGCCTCTGAATTGTCAACTGTTACTGCCGATAGTGGAGATGAGACAAATGATTGTGGAAATGGGGCCATCTCAGATCAAATGGACAACGCTCCTGCTTACGTCTCCAATGAATTTTCCATGCAGAAAGATGCACATGATAGAGGCTCTAGAAGGGAGTTGAGTTGGTCGAAATCGAACCCGGGCAACTACGGTGAAAACATGCAAAATGTTGATGCTGGGGCACACAGAATTAGCTCTAGTCAGCGGGCAGCACAAACCTCAGAGGGTGGGTTTGGTTCCAATAATGTAAAATCTGGTATGGAAAAGCAAGAAAAGGCTAATGAAGATGTGGTACCTGCAGAAACCAACAGATACGCCAGCCGAAGACAGCAGATAAGAGGAGATAACCAGGGTTTGAGCCAAGATAGATCCCCGCAAGGTCATAGAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGACTACCAAAGACCTCTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATTACCACAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGGCCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTACTCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTCTGAGTTGGGGAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTTTAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAAGCCTATAAACAGCAGGTCTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCTCGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATTATTCATTCAGCCTGAGCATATCTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGCTTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTATCATTTGATTGGAAGAATCACACCTGTTTAGACTAGAATAGCCCTTTTACTTGTCAGGTTGATCGAATAGTGAAAAATAATGTCATGAGTGGTCGGATCCATTTGATTGTGATAGC]
consensusID : consensus_2278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[GAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGACTACCAAAGACCTTTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATTNCCCCAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGGCCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTACTCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTTTGAGTTGGGGAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTTTAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAAGCCTATAAACAGCAGGTTTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCTCGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATTATTCATTCAGCCTGAGCATATTTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGCTTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTATCATTTGATTGGAAGAATCACACCTGTTTAGGCTAGAAAAAAAAAAAAA]
[-] EMBL CA761954 [GAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGACTACCAAAGACCTTTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATTNCCCCAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGGCCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTACTCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTTTGAGTTGGGGAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTTTAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAAGCCTATAAACAGCAGGTTTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCTCGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATTATTCATTCAGCCTGAGCATATTTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGCTTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTATCATTTGATTGGAAGAATCACACCTGTTTAGGCTAGAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2278#0 ATTGTTTTGTTGGGTCGGCGGCGGCGGGTGAGAGTGGAGAATGATGATGGCTCTCCGCCG 60
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 CGCCGTCGGAATTGGCTCCGCCGCCGCCCTCCGCTCTGCCGCCTACCTCCGCCGCGCCTC 120
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 CCCCTCGCCGGCGCGGCCCCATCCCCTCGTCCCTCCACCGCCTGCCGCCCGAACCTTCGC 180
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 CGCCCCGCCCCAGGTGATGAAGAGGAGCACCAAGGACGACGACGACGATGGCCCTCGGAT 240
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 CAACAACGACATCACCTCTCCCTTTGTTCGACTCGTCACTGACCAAGGCCATAGTGTTGT 300
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 CCCCAGGCACGAAGCTCTTCAGCTTGCGGCCAGGATGGACTTGGACTTGGTCGAGGTCCA 360
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 CAGAAAATCAGACCCTCCTGTCTGTAAAATCATGGATTTTCACAAAGAGAAGTATAAGAA 420
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 AGACGTTAAGGAGAAAGAACGCCTAAAAACTAAGTCTGCTATTGTCTTACGCGGTGGGGA 480
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 GAACAAAGAAGTGCGGTTTAAGGGTAAAACAGAACTAAAAGACTTGAAGGTGAAAGCAGA 540
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 TGGAATCACCAGATTAATGGAGCGAGGTTACAGGGTGAAGTGCATGGCGATGCCCTCAGG 600
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 TAATGAAGAAGAAGATTTAGGAGGGCCACTATCTCGGTTGTTAGGACTTATACAAGATGT 660
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 CTGCATAGTGGAAAGTGGCCCACATTTGGACTCGAAGCATGCATACGTTATTGTTAGGCA 720
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 TGTGAAGTTTGCAACAAAGAAAGCTGGAAAGAAAGCTAGCAAGGCCATAGAAGATGTAGG 780
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 CAAAGGTGCCCGCAAGAATGCCTCTGAATTGTCAACTGTTACTGCCGATAGTGGAGATGA 840
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 GACAAATGATTGTGGAAATGGGGCCATCTCAGATCAAATGGACAACGCTCCTGCTTACGT 900
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 CTCCAATGAATTTTCCATGCAGAAAGATGCACATGATAGAGGCTCTAGAAGGGAGTTGAG 960
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 TTGGTCGAAATCGAACCCGGGCAACTACGGTGAAAACATGCAAAATGTTGATGCTGGGGC 1020
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 ACACAGAATTAGCTCTAGTCAGCGGGCAGCACAAACCTCAGAGGGTGGGTTTGGTTCCAA 1080
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 TAATGTAAAATCTGGTATGGAAAAGCAAGAAAAGGCTAATGAAGATGTGGTACCTGCAGA 1140
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 AACCAACAGATACGCCAGCCGAAGACAGCAGATAAGAGGAGATAACCAGGGTTTGAGCCA 1200
consensus_2278#1 ------------------------------------------------------------
consensus_2278#0 AGATAGATCCCCGCAAGGTCATAGAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGA 1260
consensus_2278#1 -----------------------GAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGA 37
*************************************
consensus_2278#0 CTACCAAAGACCTCTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATT 1320
consensus_2278#1 CTACCAAAGACCTTTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATT 97
************* **********************************************
consensus_2278#0 ACCACAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGG 1380
consensus_2278#1 NCCCCAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGG 157
** ********************************************************
consensus_2278#0 CCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTAC 1440
consensus_2278#1 CCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTAC 217
************************************************************
consensus_2278#0 TCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTCTGAGTTGGG 1500
consensus_2278#1 TCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTTTGAGTTGGG 277
************************************************** *********
consensus_2278#0 GAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTT 1560
consensus_2278#1 GAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTT 337
************************************************************
consensus_2278#0 TAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAA 1620
consensus_2278#1 TAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAA 397
************************************************************
consensus_2278#0 GCCTATAAACAGCAGGTCTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCT 1680
consensus_2278#1 GCCTATAAACAGCAGGTTTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCT 457
***************** ******************************************
consensus_2278#0 CGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATT 1740
consensus_2278#1 CGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATT 517
************************************************************
consensus_2278#0 ATTCATTCAGCCTGAGCATATCTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGC 1800
consensus_2278#1 ATTCATTCAGCCTGAGCATATTTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGC 577
********************* **************************************
consensus_2278#0 TTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTA 1860
consensus_2278#1 TTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTA 637
************************************************************
consensus_2278#0 TCATTTGATTGGAAGAATCACACCTGTTTAGACTAGAATAGCCCTTTTACTTGTCAGGTT 1920
consensus_2278#1 TCATTTGATTGGAAGAATCACACCTGTTTAGGCTAGAAAAAAAAAAAAA----------- 686
******************************* ****** * *
consensus_2278#0 GATCGAATAGTGAAAAATAATGTCATGAGTGGTCGGATCCATTTGATTGTGATAGC 1976
consensus_2278#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||