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Oryza sativa
cluster # 2284 cluster # 2284       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2284#0 length = 1460 sequences # 2  

consensusID : consensus_2284#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1460
fasta sequence
                              [AAAAGCACGGTGGTGCAAATAAATGGTTCAAGGAGTAAGAACTTCAGATCAGATTCTAGAGGAAAAAATGTATCAAGCCAAAGTGTAAGATTTCAGAGGAGAATTAGGCCATGTCGGTATGACATAGATCAATTTACACCTAGTTTTATGTCAATTTTTGAATCTCTGGTGCCCTCGGATGAAGAAATTTCAAAGCAGAAGCAATTGCTGGCAACACTGAGCAGATTAATAAATAAGGAATGGCCTAATTCAAAACTTTACCTCTATGGATCGTGTGCTAATTCATTTGGTTTCTCAAATAGTGATATTGATCTTTGTCTGTCTATTGACGAGAAGGAAATGAGCAAGGTTGACATTATTTTGAAACTGGCACATATTCTCCATGCTGGTAATCTCCGGAATATTCAGGCATTAACTCGGGCAAGGGTCCCAATAGTGAAGCTTATGGATCCAAATACAGGGCTATCTTGTGACATATGTGTCAATAACCTTTTAGCAGTTGTTAACACAAAACTTCTAAGAGATTATTCACGAATTGATAAAAGGTTACGGCCATTAGCATTCATTGTGAAGCATTGGGCTAAATCTCGGTGTGTAAATGAAACTTACCAAGGAACACTTTCTAGTTATGCCTATGTGATAATGTGCATCCACTACTTACAGTCACAGAGAATACTCCCATGTCTACAGGAAATGGAGCCGACCTATTATGTCACTGTTGATAATAATATTTGTGCATACTTTGATCAAGTGGACAAATTAAATGGCTTTGGCGCTCAATGCAAAGACACTTTATCAAGGTTGCTTTGGGGC--TTTTTT-CGTT-ACTGGG-CATATG-CCCATAATTA-CACAAAGGATGTAATAT-CAATTCGGACTGGAAGAACCATTAGTAAGAATATGAAGGATTGGACAAGAAGAATTGGAAATGACAGGCATCTCATTTGCATTGAAGATCCTTTTGAGACCTCCCATGATCTTGGTCGTGTTGTTGACAATAGATCGATCTGGGCACTCCGAGAGGAATTTGAGCGAGCTGCGGAGATATTGCACCTTGACCCAAACCCCAGCATCACACTTTTTGAGCCTTATGTGCCCTCTGAAGCTGAAACATGATACCACAAAATCATCATCATCATGTTCTGCTGTGTCAAGAAGCCCTTCAGTTCCAAAGGAATCTTGTCAAAGCTTATGTCGTACTATGTGCATAGCTTAGCTGTACCATGTATACTTAAGTTGTAAAGTAACTAGGGGCCTCAGCAGTAGGTGGTGACAGCACGCTTCTGCTAAGTGGTAATTGGGGGAAGCCAGCAATATTTAATCAGATTTCTAGTGCTATCAATTCTTATTTAGAAAGGGAGATGTTTGAACTAGACACTACTGTCCGATATTTCATGATAGTTTAGCGTGCAGTAGTTTTTTTCCCTAATGAGAAGAATAATAAAGTTGCTTTAAGCCCAAAAAAA]

[+] EMBL AK070718             [AAAAGCACGGTGGTGCAAATAAATGGTTCAAGGAGTAAGAACTTCAGATCAGATTCTAGAGGAAAAAATGTATCAAGCCAAAGTGTAAGATTTCAGAGGAGAATTAGGCCATGTCGGTATGACATAGATCAATTTACACCTAGTTTTATGTCAATTTTTGAATCTCTGGTGCCCTCGGATGAAGAAATTTCAAAGCAGAAGCAATTGCTGGCAACACTGAGCAGATTAATAAATAAGGAATGGCCTAATTCAAAACTTTACCTCTATGGATCGTGTGCTAATTCATTTGGTTTCTCAAATAGTGATATTGATCTTTGTCTGTCTATTGACGAGAAGGAAATGAGCAAGGTTGACATTATTTTGAAACTGGCACATATTCTCCATGCTGGTAATCTCCGGAATATTCAGGCATTAACTCGGGCAAGGGTCCCAATAGTGAAGCTTATGGATCCAAATACAGGGCTATCTTGTGACATATGTGTCAATAACCTTTTAGCAGTTGTTAACACAAAACTTCTAAGAGATTATTCACGAATTGATAAAAGGTTACGGCCATTAGCATTCATTGTGAAGCATTGGGCTAAATCTCGGTGTGTAAATGAAACTTACCAAGGAACACTTTCTAGTTATGCCTATGTGATAATGTGCATCCACTACTTACAGTCACAGAGAATACTCCCATGTCTACAGGAAATGGAGCCGACCTATTATGTCACTGTTGATAATAATATTTGTGCATACTTTGATCAAGTGGACAAATTAAATGGCTTTGGCGCTCAATGCAAAGACACTTTATCAAGGTTGCTTTGGGGC  TTTTTT CGTT ACTGGG CATATG CCCATAATTA CACAAAGGATGTAATAT CAATTCGGACTGGAAGAACCATTAGTAAGAATATGAAGGATTGGACAAGAAGAATTGGAAATGACAGGCATCTCATTTGCATTGAAGATCCTTTTGAGACCTCCCATGATCTTGGTCGTGTTGTTGACAATAGATCGATCTGGGCACTCCGAGAGGAATTTGAGCGAGCTGCGGAGATATTGCACCTTGACCCAAACCCCAGCATCACACTTTTTGAGCCTTATGTGCCCTCTGAAGCTGAAACATGATACCACAAAATCATCATCATCATGTTCTGCTGTGTCAAGAAGCCCTTCAGTTCCAAAGGAATCTTGTCAAAGCTTATGTCGTACTATGTGCATAGCTTAGCTGTACCATGTATACTTAAGTTGTAAAGTAACTAGGGGCCTCAGCAGTAGGTGGTGACAGCACGCTTCTGCTAAGTGGTAATTGGGGGAAGCCAGCAATATTTAATCAGATTTCTAGTGCTATCAATTCTTATTTAGAAAGGGAGATGTTTGAACTAGACACTACTGTCCGATATTTCATGATAGTTTAGCGTGCAGTAGTTTTTTTCCCTAATGAGAAGAATAATAAAGTTG                 ]
[+] EMBL AU075561             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 tncCTTTGGGGCCTTTTTTTCCGTTAACTGGGNCATATGCCCCATAATTACCCCAAGGGATGTAATATNCAATTCGGACTGGANGAACCATTAGTAAG ATTTGAGGGATTGGACAAGAAGAATTGGAAATGACAGGCATCTCATTTGCATTGAAGATCCTTTTGAGACCTCCCATGATCTTGGTCGTGTTGTTGACAATAGATCGATCTGGGCACTCCGAGAGGAATTTGAGCGAGCTNCGGAGATATTGCACCTTGACCCAAACCCCAGCATCACACTTTTTGAGCCTTATGTGCCCTNTGAAGCTGAAACATGATACCACAAAATCATCATCATCATGTTCTGCTGTGTCAAGAAGCCCTTCAGTTCCAAAGGAATCTTGTCAAAGCTTATGTCGTACTATGTGCATAGCTTAGCTGTACCATGTATACTTAAGTTGTAAAGTAACTAGGGGCCTCAGCAGTAGGTGGTGACAGCATGCTTCTGCTAAGTGGTAATTGGGGGAAGCCAGCAATATTTAATCAGATTTCTAGTGCTATCAATTCTTATTTAGAAAGGGAGATGTTTGAACTAGACACTACTGTCCGATATTTCATGATAGTTTAGCGTGCAGTAGTTTTTTTCCCTAATGAGAAGAATAATAAAGTTGCTTTAAGCCCAAAAAAA]


>consensus_2284#0 AAAAGCACGGTGGTGCAAATAAATGGTTCAAGGAGTAAGAACTTCAGATCAGATTCTAGA GGAAAAAATGTATCAAGCCAAAGTGTAAGATTTCAGAGGAGAATTAGGCCATGTCGGTAT GACATAGATCAATTTACACCTAGTTTTATGTCAATTTTTGAATCTCTGGTGCCCTCGGAT GAAGAAATTTCAAAGCAGAAGCAATTGCTGGCAACACTGAGCAGATTAATAAATAAGGAA TGGCCTAATTCAAAACTTTACCTCTATGGATCGTGTGCTAATTCATTTGGTTTCTCAAAT AGTGATATTGATCTTTGTCTGTCTATTGACGAGAAGGAAATGAGCAAGGTTGACATTATT TTGAAACTGGCACATATTCTCCATGCTGGTAATCTCCGGAATATTCAGGCATTAACTCGG GCAAGGGTCCCAATAGTGAAGCTTATGGATCCAAATACAGGGCTATCTTGTGACATATGT GTCAATAACCTTTTAGCAGTTGTTAACACAAAACTTCTAAGAGATTATTCACGAATTGAT AAAAGGTTACGGCCATTAGCATTCATTGTGAAGCATTGGGCTAAATCTCGGTGTGTAAAT GAAACTTACCAAGGAACACTTTCTAGTTATGCCTATGTGATAATGTGCATCCACTACTTA CAGTCACAGAGAATACTCCCATGTCTACAGGAAATGGAGCCGACCTATTATGTCACTGTT GATAATAATATTTGTGCATACTTTGATCAAGTGGACAAATTAAATGGCTTTGGCGCTCAA TGCAAAGACACTTTATCAAGGTTGCTTTGGGGCTTTTTTCGTTACTGGGCATATGCCCAT AATTACACAAAGGATGTAATATCAATTCGGACTGGAAGAACCATTAGTAAGAATATGAAG GATTGGACAAGAAGAATTGGAAATGACAGGCATCTCATTTGCATTGAAGATCCTTTTGAG ACCTCCCATGATCTTGGTCGTGTTGTTGACAATAGATCGATCTGGGCACTCCGAGAGGAA TTTGAGCGAGCTGCGGAGATATTGCACCTTGACCCAAACCCCAGCATCACACTTTTTGAG CCTTATGTGCCCTCTGAAGCTGAAACATGATACCACAAAATCATCATCATCATGTTCTGC TGTGTCAAGAAGCCCTTCAGTTCCAAAGGAATCTTGTCAAAGCTTATGTCGTACTATGTG CATAGCTTAGCTGTACCATGTATACTTAAGTTGTAAAGTAACTAGGGGCCTCAGCAGTAG GTGGTGACAGCACGCTTCTGCTAAGTGGTAATTGGGGGAAGCCAGCAATATTTAATCAGA TTTCTAGTGCTATCAATTCTTATTTAGAAAGGGAGATGTTTGAACTAGACACTACTGTCC GATATTTCATGATAGTTTAGCGTGCAGTAGTTTTTTTCCCTAATGAGAAGAATAATAAAG TTGCTTTAAGCCCAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)