These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 960 fasta sequence [AGGCGACCTCGTCTAAACCCCCACGCTCCCATGGCCGCCGCCGCCGCGTACCCCACCGCCGCCACTCTCCCCCCGCGCCGCGCACCTCCGCCCTCTCTCCGGCCGTCGCCGCCGCTCTCGTGGTCCGCCTCCATCGCCCACCTCGCGCTCTCGCCGCCGCCCGTGCCCAGCAACCGCGCGTCCCTGGTGGTGCGCGCGGCGTGGACGCGGCGGTCGCGGAAGGAGGCGGAGGAGAGGCCCAACCGCAAGTCGTGGAAGCAGCGCACGGACATGTACATGCGGCCGTTCCTGCTCAACGTCTTCTTCTCCAAGCGCTTCGTCCACGCCAAGGTCGTGCACAGGGGCACCAGCAAGGTCATCTCCGTCGCCAGCACCAACGCCAAGGACCTCAGGACCACGCTGCCCTCCCTCGTCGACGACAACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTCGCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATCGACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCGGCTTACAACGTTGATTAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGTCTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAATTGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGGTAAGACCTCAGATTTGCACTGCCTATGGTGAATGGTCCTGCACTTAAGAAAGAGGATAGTAAAATGAGGCTCACATTCTTTACTGGTTCTCAAACTATGCTCCTTTCCTAAGTTCAATATTATCTTGTCATGCTTGCAGTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTT] [+] EMBL AK072634 [AGGCGACCTCGTCTAAACCCCCACGCTCCCATGGCCGCCGCCGCCGCGTACCCCACCGCCGCCACTCTCCCCCCGCGCCGCGCACCTCCGCCCTCTCTCCGGCCGTCGCCGCCGCTCTCGTGGTCCGCCTCCATCGCCCACCTCGCGCTCTCGCCGCCGCCCGTGCCCAGCAACCGCGCGTCCCTGGTGGTGCGCGCGGCGTGGACGCGGCGGTCGCGGAAGGAGGCGGAGGAGAGGCCCAACCGCAAGTCGTGGAAGCAGCGCACGGACATGTACATGCGGCCGTTCCTGCTCAACGTCTTCTTCTCCAAGCGCTTCGTCCACGCCAAGGTCGTGCACAGGGGCACCAGCAAGGTCATCTCCGTCGCCAGCACCAACGCCAAGGACCTCAGGACCACGCTGCCCTCCCTCGTCGACGACAACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTCGCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATCGACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCGGCTTACAACGTTGATTAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGTCTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAATTGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGGTAAGACCTCAGATTTGCACTGCCTATGGTGAATGGTCCTGCACTTAAGAAAGAGGATAGTAAAATGAGGCTCACATTCTTTACTGGTTCTCAAACTATGCTCCTTTCCTAAGTTCAATATTATCTTGTCATGCTTGCAGTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTT] consensusID : consensus_2286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [CCCTCGTCGACGACAACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTCGCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATCGACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCAGCTTACAACGTTGATTAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGTCTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAATTGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTTTTTTTTTCGCATTCATCTTGTATCCCTGGAAAATGAAGTAATCTAATTGAATGTGGCATGTCA] [+] EMBL AK063776 [CCCTCGTCGACGACAACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTCGCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATCGACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCAGCTTACAACGTTGATTAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGTCTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAATTGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTTTTTTTTTCGCATTCATCTTGTATCCCTGGAAAATGAAGTAATCTAATTGAATGTGGCATGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2286#0 AGGCGACCTCGTCTAAACCCCCACGCTCCCATGGCCGCCGCCGCCGCGTACCCCACCGCC 60 consensus_2286#1 ------------------------------------------------------------ consensus_2286#0 GCCACTCTCCCCCCGCGCCGCGCACCTCCGCCCTCTCTCCGGCCGTCGCCGCCGCTCTCG 120 consensus_2286#1 ------------------------------------------------------------ consensus_2286#0 TGGTCCGCCTCCATCGCCCACCTCGCGCTCTCGCCGCCGCCCGTGCCCAGCAACCGCGCG 180 consensus_2286#1 ------------------------------------------------------------ consensus_2286#0 TCCCTGGTGGTGCGCGCGGCGTGGACGCGGCGGTCGCGGAAGGAGGCGGAGGAGAGGCCC 240 consensus_2286#1 ------------------------------------------------------------ consensus_2286#0 AACCGCAAGTCGTGGAAGCAGCGCACGGACATGTACATGCGGCCGTTCCTGCTCAACGTC 300 consensus_2286#1 ------------------------------------------------------------ consensus_2286#0 TTCTTCTCCAAGCGCTTCGTCCACGCCAAGGTCGTGCACAGGGGCACCAGCAAGGTCATC 360 consensus_2286#1 ------------------------------------------------------------ consensus_2286#0 TCCGTCGCCAGCACCAACGCCAAGGACCTCAGGACCACGCTGCCCTCCCTCGTCGACGAC 420 consensus_2286#1 ----------------------------------------------CCCTCGTCGACGAC 14 ************** consensus_2286#0 AACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTC 480 consensus_2286#1 AACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTC 74 ************************************************************ consensus_2286#0 GCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATC 540 consensus_2286#1 GCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATC 134 ************************************************************ consensus_2286#0 GACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCGGCTTACAACGTTGAT 600 consensus_2286#1 GACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCAGCTTACAACGTTGAT 194 ******************************************** *************** consensus_2286#0 TAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGT 660 consensus_2286#1 TAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGT 254 ************************************************************ consensus_2286#0 CTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAAT 720 consensus_2286#1 CTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAAT 314 ************************************************************ consensus_2286#0 TGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGGTAAGACCTCAGATTTGCA 780 consensus_2286#1 TGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAG-------TGCACAGAAACC 367 ***************************************** ** * * consensus_2286#0 CTGCCTATGGTGAATGGTCCTGCACTTA-AGAAAGAGGATAGTAAAATGAGGCTCACATT 839 consensus_2286#1 ATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTTTTTTTTTCGCATT 427 * * ** ** ****** * * * * * ** *** * ** **** consensus_2286#0 CTTTACTGGTTCTCAAACTATGCTCCTTTCCTAAGTTCAATATTATCTTGTCATGCTTGC 899 consensus_2286#1 CATCTTGTATCCCTGGAAAATGAAGTAATCT--AATTGAATGT-GGCATGTCA------- 477 * * * * * *** ** * ** *** * * ***** consensus_2286#0 AGTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTT 959 consensus_2286#1 ------------------------------------------------------------ consensus_2286#0 T 960 consensus_2286#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||