These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2289#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1044 fasta sequence [GTAGTTATATGAGAATAGTCCAAGGTAAGGGTGAGAACAAAGAACAGCTAGCTTGATACTACATTCGTACTAAAATATAGTTATTTCTAGTACTTGTCTCAAAATGAATCTATTTCTACACCTTTTTTTTAGGGAAGCTATATTTTTACACCTACCAACTTCTCTTAATCAATTATAACTATTCTCTATTTAATTTTTTTACCTACTTTCTTTTCTCAACCAATCACAAGAATCCTCCAATCATTTTCACCTACCCATGGAGTACCAAATGGAGGTTTCTGTTTTTTTTTTGCGCCAAAATTGTTTAAAGTTGATGCCTACTTCCATTTCAAGGTCCAGTTATAATTTTCGGGCCTAGCCCAAAATTCCCAAGCAACAAGACAACATCCAGCCTTTGTCTCAAATCTTCATCAACAAGGTTGGGCCTAATGTATATTTGTCCAAAACTTCCTCTAAATGCCTAACCACCGTTAATGGAGCAAGATTCCCACTAGCAGATGATATATGTTAATTAATTAAGTTTTTTTTTTCACCATTTATAGCAAAGATAGACAGTGGAAATACACAATTGTATATCTTAATTTACTCGATGGATAAACACGGAACAACTTGTAAAGTTTAAACTAGACGAATAATATTGTGAAGTGGGTATTATAATACCCATTTCATAATGTATTCAGAAGATCATTACTACACGCTGCAGTTCTTATAGTAATGTTTTTTGGTACATTATATATTTATTCTTCTGAATTTATTATGTTATACTCTCATTAAGTATTTCCATATGATCTTGAGCAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCA] [+] EMBL AK103078 [GTAGTTATATGAGAATAGTCCAAGGTAAGGGTGAGAACAAAGAACAGCTAGCTTGATACTACATTCGTACTAAAATATAGTTATTTCTAGTACTTGTCTCAAAATGAATCTATTTCTACACCTTTTTTTTAGGGAAGCTATATTTTTACACCTACCAACTTCTCTTAATCAATTATAACTATTCTCTATTTAATTTTTTTACCTACTTTCTTTTCTCAACCAATCACAAGAATCCTCCAATCATTTTCACCTACCCATGGAGTACCAAATGGAGGTTTCTGTTTTTTTTTTGCGCCAAAATTGTTTAAAGTTGATGCCTACTTCCATTTCAAGGTCCAGTTATAATTTTCGGGCCTAGCCCAAAATTCCCAAGCAACAAGACAACATCCAGCCTTTGTCTCAAATCTTCATCAACAAGGTTGGGCCTAATGTATATTTGTCCAAAACTTCCTCTAAATGCCTAACCACCGTTAATGGAGCAAGATTCCCACTAGCAGATGATATATGTTAATTAATTAAGTTTTTTTTTTCACCATTTATAGCAAAGATAGACAGTGGAAATACACAATTGTATATCTTAATTTACTCGATGGATAAACACGGAACAACTTGTAAAGTTTAAACTAGACGAATAATATTGTGAAGTGGGTATTATAATACCCATTTCATAATGTATTCAGAAGATCATTACTACACGCTGCAGTTCTTATAGTAATGTTTTTTGGTACATTATATATTTATTCTTCTGAATTTATTATGTTATACTCTCATTAAGTATTTCCATATGATCTTGAGCAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCA] consensusID : consensus_2289#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence [TAGCTACTGCTAGTTCCTACACATTGCTCGCTGCGGTAAGGTTAGCATTGGTTGGTGAGAGAGAGAGAGAGAGAGAGAGGTTGCAGCTAGCAGCAGAGAAGCACCTGCAGAGGCGAGAGGCATGGAGTGCGGCGGCGGCGGCAGGGAGCAGCAGATGCAGATCGTGTGCGTGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGATGGGTCGTCGGAGTGGGACCAGTCGTCGTCGCGGTCGGCGCTGTCGCTGTTCAAGGAGAAGGAGGAGGAGATCGAGCGGAAGAAGCTGGAGGTGCGGGAGAAGGTGTTCTCCATGCTCGGCCGGGTCGAGGAGGAGACCAAGCGCCTCGCCTTCATCCGCCAGGAGCTGGAGGTGATGTCGGATCCGACGCGGCGGGAGGTGGAGACGATACGGAAGCGCATCGACAAGGTGAACCGCCAGCTCAAGCCGCTCGGCAAGAACTGCCTCAAGAAGGAGAAGGAATACAAGGCGTGCCTAGAGGCTTACAACGAGAAGAGCAACGAGAAAGCAACGCTTGTGAACAGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTCAAGAGAAATCCTTTTTTTTCCCAATTAGAGGGCTCGAAACAGGATTA] [+] EMBL AK063839 [TAGCTACTGCTAGTTCCTACACATTGCTCGCTGCGGTAAGGTTAGCATTGGTTGGTGAGAGAGAGAGAGAGAGAGAGAGGTTGCAGCTAGCAGCAGAGAAGCACCTGCAGAGGCGAGAGGCATGGAGTGCGGCGGCGGCGGCAGGGAGCAGCAGATGCAGATCGTGTGCGTGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGATGGGTCGTCGGAGTGGGACCAGTCGTCGTCGCGGTCGGCGCTGTCGCTGTTCAAGGAGAAGGAGGAGGAGATCGAGCGGAAGAAGCTGGAGGTGCGGGAGAAGGTGTTCTCCATGCTCGGCCGGGTCGAGGAGGAGACCAAGCGCCTCGCCTTCATCCGCCAGGAGCTGGAGGTGATGTCGGATCCGACGCGGCGGGAGGTGGAGACGATACGGAAGCGCATCGACAAGGTGAACCGCCAGCTCAAGCCGCTCGGCAAGAACTGCCTCAAGAAGGAGAAGGAATACAAGGCGTGCCTAGAGGCTTACAACGAGAAGAGCAACGAGAAAGCAACGCTTGTGAACAGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTCAAGAGAAATCCTTTTTTTTCCCAATTAGAGGGCTCGAAACAGGATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2289#0 GTAGTTATATGAGAATAGTCCAAGGTAAGGGTGAGAACAAAGAACAGCTAGCTTGATACT 60 consensus_2289#1 ------------------------------------------------------------ consensus_2289#0 ACATTCGTACTAAAATATAGTTATTTCTAGTACTTGTCTCAAAATGAATCTATTTCTACA 120 consensus_2289#1 ------------------------------------------------------------ consensus_2289#0 CCTTTTTTTTAGGGAAGCTATATTTTTACACCTACCAACTTCTCTTAATCAATTATAACT 180 consensus_2289#1 ------------------------------------------------------------ consensus_2289#0 ATTCTCTATTTAATTTTTTTACCTACTTTCTTTTCTCAACCAATCACAAGAATCCTCCAA 240 consensus_2289#1 -------------------TAGCTACTGCTAGTTCCTACACATTGCTCGCTGCGGTAAGG 41 ** ***** *** * ** * * consensus_2289#0 TCATTTTCACCTACCCATGGAGTACCAAATGGAGGTTTCTGTTTTTTTTTTGCGCCAAAA 300 consensus_2289#1 TTAGCATTGGTTGGTGAGAGAGAGAGAGAGAGAGAGAGGTTGCAGCTAGCAGCAG-AGAA 100 * * * * * *** * * *** * * ** * ** consensus_2289#0 TTGTTTAAAGTTGATGCCTACTTCCATTTCAAGGTC--CAGTTATAATTTTCGGGCCTAG 358 consensus_2289#1 GCACCTGCAGAGGCGAGAGGCATGGAGTGCGGCGGCGGCGGCAGGGAGCAGCAGATGCAG 160 * ** * * * * * * * * * * * * * ** consensus_2289#0 CCCAAAATTCCCAAGCAACAAGACAACATCCAGCCTTTGTCTCAAATCTTCATCAACAAG 418 consensus_2289#1 ATCG---TGTGCGTGCGGGGCGGCGGCGGC-GGCGGCGGCGGCGG--CGGCGGCGAGGAG 214 * * * ** * * * * ** * * * * * * ** consensus_2289#0 GTTGGGCCTAATGTATATTTGTCCAAAACTTCCTCTAAAT--GCCTAACCACCGTTAATG 476 consensus_2289#1 GATGGGTCGTCGGAGTG---GGACCAGTCGTCGTCGCGGTCGGCGCTGTCGCTGTTCAAG 271 * **** * * * * * * * ** ** * ** * * *** * * consensus_2289#0 GAGCAAGATTCCCACTAGCAGATGATATATGTTAATTAATTAAGTTTTTTTTTTCACCAT 536 consensus_2289#1 GAGAAGGAGGAGGAG-ATCGAGCGGAAGAAGCTGGAGGTGCGGGAGAAGGTGTTCTCCAT 330 *** * ** * * * * * * * * * * *** **** consensus_2289#0 TTATAGCAAAGATAGACAGTGGAAATACACAATTGTATATCTTAATTTACTCGATGGATA 596 consensus_2289#1 GCTCGGCCG-GGTCGAGGAGGAGACCAAGCGCCT---CGCCTTCATCCGCCAG------- 379 ** * * ** * * * * * *** ** * * consensus_2289#0 AACACGGAACAACTTGTAAAGTTTAAACTAGACGAATAATATTGTGAAGTGGGTATTATA 656 consensus_2289#1 ------GAGCTGGAGGTGATGTC-GGATCCGACGCGGCGGGAGGTGGAGACGATACGGAA 432 ** * ** * ** * **** *** ** * ** * consensus_2289#0 ATACCCATTTCATAATGT-ATTCAGAAGATCATTACTACACGCTGCAGTTCTTATAGTAA 715 consensus_2289#1 GCGCA---TCGACAAGGTGAACCGCCAGCTCAAGCCGCTCGGCAAGAACTGCCTCAAGAA 489 * * * ** ** * * ** *** * ** * * * ** consensus_2289#0 TGTTTTTTGGTACATTATATATTTATTCTTCTGAATTTATTATGTTATACTCTCATTAAG 775 consensus_2289#1 GGAGAAGGAATACAAGGCGTGCCTAGAGGCTTACAACGAGAAGAGCA-ACGAGAAAGCAA 548 * **** * ** * * * * * ** * * consensus_2289#0 TATTTCCATATGATCTTGAGCAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGC 835 consensus_2289#1 CGCTTGTGAACAGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGC 608 ** * * * *************************************** consensus_2289#0 TCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCAT 895 consensus_2289#1 TCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCAT 668 ************************************************************ consensus_2289#0 GGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTT-ATGACAC 954 consensus_2289#1 GGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTTATGACAC 728 **************************************************** ******* consensus_2289#0 GAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGG 1014 consensus_2289#1 GAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGG 788 ************************************************************ consensus_2289#0 ATCACGAGTTTATCTATTCTGTATGGTTCA------------------------------ 1044 consensus_2289#1 ATCACGAGTTTATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTCAAGAGAAA 848 ****************************** consensus_2289#0 --------------------------------------- consensus_2289#1 TCCTTTTTTTTCCCAATTAGAGGGCTCGAAACAGGATTA 887 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||