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Oryza sativa
cluster # 2289 cluster # 2289       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2289#0 length = 1044 sequences # 1  
consensus_2289#1 length = 887 sequences # 1  

consensusID : consensus_2289#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1044
fasta sequence
                              [GTAGTTATATGAGAATAGTCCAAGGTAAGGGTGAGAACAAAGAACAGCTAGCTTGATACTACATTCGTACTAAAATATAGTTATTTCTAGTACTTGTCTCAAAATGAATCTATTTCTACACCTTTTTTTTAGGGAAGCTATATTTTTACACCTACCAACTTCTCTTAATCAATTATAACTATTCTCTATTTAATTTTTTTACCTACTTTCTTTTCTCAACCAATCACAAGAATCCTCCAATCATTTTCACCTACCCATGGAGTACCAAATGGAGGTTTCTGTTTTTTTTTTGCGCCAAAATTGTTTAAAGTTGATGCCTACTTCCATTTCAAGGTCCAGTTATAATTTTCGGGCCTAGCCCAAAATTCCCAAGCAACAAGACAACATCCAGCCTTTGTCTCAAATCTTCATCAACAAGGTTGGGCCTAATGTATATTTGTCCAAAACTTCCTCTAAATGCCTAACCACCGTTAATGGAGCAAGATTCCCACTAGCAGATGATATATGTTAATTAATTAAGTTTTTTTTTTCACCATTTATAGCAAAGATAGACAGTGGAAATACACAATTGTATATCTTAATTTACTCGATGGATAAACACGGAACAACTTGTAAAGTTTAAACTAGACGAATAATATTGTGAAGTGGGTATTATAATACCCATTTCATAATGTATTCAGAAGATCATTACTACACGCTGCAGTTCTTATAGTAATGTTTTTTGGTACATTATATATTTATTCTTCTGAATTTATTATGTTATACTCTCATTAAGTATTTCCATATGATCTTGAGCAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCA]

[+] EMBL AK103078             [GTAGTTATATGAGAATAGTCCAAGGTAAGGGTGAGAACAAAGAACAGCTAGCTTGATACTACATTCGTACTAAAATATAGTTATTTCTAGTACTTGTCTCAAAATGAATCTATTTCTACACCTTTTTTTTAGGGAAGCTATATTTTTACACCTACCAACTTCTCTTAATCAATTATAACTATTCTCTATTTAATTTTTTTACCTACTTTCTTTTCTCAACCAATCACAAGAATCCTCCAATCATTTTCACCTACCCATGGAGTACCAAATGGAGGTTTCTGTTTTTTTTTTGCGCCAAAATTGTTTAAAGTTGATGCCTACTTCCATTTCAAGGTCCAGTTATAATTTTCGGGCCTAGCCCAAAATTCCCAAGCAACAAGACAACATCCAGCCTTTGTCTCAAATCTTCATCAACAAGGTTGGGCCTAATGTATATTTGTCCAAAACTTCCTCTAAATGCCTAACCACCGTTAATGGAGCAAGATTCCCACTAGCAGATGATATATGTTAATTAATTAAGTTTTTTTTTTCACCATTTATAGCAAAGATAGACAGTGGAAATACACAATTGTATATCTTAATTTACTCGATGGATAAACACGGAACAACTTGTAAAGTTTAAACTAGACGAATAATATTGTGAAGTGGGTATTATAATACCCATTTCATAATGTATTCAGAAGATCATTACTACACGCTGCAGTTCTTATAGTAATGTTTTTTGGTACATTATATATTTATTCTTCTGAATTTATTATGTTATACTCTCATTAAGTATTTCCATATGATCTTGAGCAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCA]


>consensus_2289#0 GTAGTTATATGAGAATAGTCCAAGGTAAGGGTGAGAACAAAGAACAGCTAGCTTGATACT ACATTCGTACTAAAATATAGTTATTTCTAGTACTTGTCTCAAAATGAATCTATTTCTACA CCTTTTTTTTAGGGAAGCTATATTTTTACACCTACCAACTTCTCTTAATCAATTATAACT ATTCTCTATTTAATTTTTTTACCTACTTTCTTTTCTCAACCAATCACAAGAATCCTCCAA TCATTTTCACCTACCCATGGAGTACCAAATGGAGGTTTCTGTTTTTTTTTTGCGCCAAAA TTGTTTAAAGTTGATGCCTACTTCCATTTCAAGGTCCAGTTATAATTTTCGGGCCTAGCC CAAAATTCCCAAGCAACAAGACAACATCCAGCCTTTGTCTCAAATCTTCATCAACAAGGT TGGGCCTAATGTATATTTGTCCAAAACTTCCTCTAAATGCCTAACCACCGTTAATGGAGC AAGATTCCCACTAGCAGATGATATATGTTAATTAATTAAGTTTTTTTTTTCACCATTTAT AGCAAAGATAGACAGTGGAAATACACAATTGTATATCTTAATTTACTCGATGGATAAACA CGGAACAACTTGTAAAGTTTAAACTAGACGAATAATATTGTGAAGTGGGTATTATAATAC CCATTTCATAATGTATTCAGAAGATCATTACTACACGCTGCAGTTCTTATAGTAATGTTT TTTGGTACATTATATATTTATTCTTCTGAATTTATTATGTTATACTCTCATTAAGTATTT CCATATGATCTTGAGCAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAA GAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTG CCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTATGACACGAGGAT GAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACG AGTTTATCTATTCTGTATGGTTCA



consensusID : consensus_2289#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 887
fasta sequence
                              [TAGCTACTGCTAGTTCCTACACATTGCTCGCTGCGGTAAGGTTAGCATTGGTTGGTGAGAGAGAGAGAGAGAGAGAGAGGTTGCAGCTAGCAGCAGAGAAGCACCTGCAGAGGCGAGAGGCATGGAGTGCGGCGGCGGCGGCAGGGAGCAGCAGATGCAGATCGTGTGCGTGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGATGGGTCGTCGGAGTGGGACCAGTCGTCGTCGCGGTCGGCGCTGTCGCTGTTCAAGGAGAAGGAGGAGGAGATCGAGCGGAAGAAGCTGGAGGTGCGGGAGAAGGTGTTCTCCATGCTCGGCCGGGTCGAGGAGGAGACCAAGCGCCTCGCCTTCATCCGCCAGGAGCTGGAGGTGATGTCGGATCCGACGCGGCGGGAGGTGGAGACGATACGGAAGCGCATCGACAAGGTGAACCGCCAGCTCAAGCCGCTCGGCAAGAACTGCCTCAAGAAGGAGAAGGAATACAAGGCGTGCCTAGAGGCTTACAACGAGAAGAGCAACGAGAAAGCAACGCTTGTGAACAGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTCAAGAGAAATCCTTTTTTTTCCCAATTAGAGGGCTCGAAACAGGATTA]

[+] EMBL AK063839             [TAGCTACTGCTAGTTCCTACACATTGCTCGCTGCGGTAAGGTTAGCATTGGTTGGTGAGAGAGAGAGAGAGAGAGAGAGGTTGCAGCTAGCAGCAGAGAAGCACCTGCAGAGGCGAGAGGCATGGAGTGCGGCGGCGGCGGCAGGGAGCAGCAGATGCAGATCGTGTGCGTGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGATGGGTCGTCGGAGTGGGACCAGTCGTCGTCGCGGTCGGCGCTGTCGCTGTTCAAGGAGAAGGAGGAGGAGATCGAGCGGAAGAAGCTGGAGGTGCGGGAGAAGGTGTTCTCCATGCTCGGCCGGGTCGAGGAGGAGACCAAGCGCCTCGCCTTCATCCGCCAGGAGCTGGAGGTGATGTCGGATCCGACGCGGCGGGAGGTGGAGACGATACGGAAGCGCATCGACAAGGTGAACCGCCAGCTCAAGCCGCTCGGCAAGAACTGCCTCAAGAAGGAGAAGGAATACAAGGCGTGCCTAGAGGCTTACAACGAGAAGAGCAACGAGAAAGCAACGCTTGTGAACAGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTCAAGAGAAATCCTTTTTTTTCCCAATTAGAGGGCTCGAAACAGGATTA]


>consensus_2289#1 TAGCTACTGCTAGTTCCTACACATTGCTCGCTGCGGTAAGGTTAGCATTGGTTGGTGAGA GAGAGAGAGAGAGAGAGAGGTTGCAGCTAGCAGCAGAGAAGCACCTGCAGAGGCGAGAGG CATGGAGTGCGGCGGCGGCGGCAGGGAGCAGCAGATGCAGATCGTGTGCGTGCGGGGCGG CGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGATGGGTCGTCGGAGTGGGACCAGTC GTCGTCGCGGTCGGCGCTGTCGCTGTTCAAGGAGAAGGAGGAGGAGATCGAGCGGAAGAA GCTGGAGGTGCGGGAGAAGGTGTTCTCCATGCTCGGCCGGGTCGAGGAGGAGACCAAGCG CCTCGCCTTCATCCGCCAGGAGCTGGAGGTGATGTCGGATCCGACGCGGCGGGAGGTGGA GACGATACGGAAGCGCATCGACAAGGTGAACCGCCAGCTCAAGCCGCTCGGCAAGAACTG CCTCAAGAAGGAGAAGGAATACAAGGCGTGCCTAGAGGCTTACAACGAGAAGAGCAACGA GAAAGCAACGCTTGTGAACAGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGAT GAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGG GGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTT TATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAG CTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTC AAGAGAAATCCTTTTTTTTCCCAATTAGAGGGCTCGAAACAGGATTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2289#0      GTAGTTATATGAGAATAGTCCAAGGTAAGGGTGAGAACAAAGAACAGCTAGCTTGATACT 60
consensus_2289#1      ------------------------------------------------------------
                                                                                  

consensus_2289#0      ACATTCGTACTAAAATATAGTTATTTCTAGTACTTGTCTCAAAATGAATCTATTTCTACA 120
consensus_2289#1      ------------------------------------------------------------
                                                                                  

consensus_2289#0      CCTTTTTTTTAGGGAAGCTATATTTTTACACCTACCAACTTCTCTTAATCAATTATAACT 180
consensus_2289#1      ------------------------------------------------------------
                                                                                  

consensus_2289#0      ATTCTCTATTTAATTTTTTTACCTACTTTCTTTTCTCAACCAATCACAAGAATCCTCCAA 240
consensus_2289#1      -------------------TAGCTACTGCTAGTTCCTACACATTGCTCGCTGCGGTAAGG 41
                                         ** *****     ***  *  ** *           *    

consensus_2289#0      TCATTTTCACCTACCCATGGAGTACCAAATGGAGGTTTCTGTTTTTTTTTTGCGCCAAAA 300
consensus_2289#1      TTAGCATTGGTTGGTGAGAGAGAGAGAGAGAGAGAGAGGTTGCAGCTAGCAGCAG-AGAA 100
                      * *   *    *    *  ***    * *  ***     *      *    **   * **

consensus_2289#0      TTGTTTAAAGTTGATGCCTACTTCCATTTCAAGGTC--CAGTTATAATTTTCGGGCCTAG 358
consensus_2289#1      GCACCTGCAGAGGCGAGAGGCATGGAGTGCGGCGGCGGCGGCAGGGAGCAGCAGATGCAG 160
                           *  **  *       * *  * * *   * *  * *     *    * *    **

consensus_2289#0      CCCAAAATTCCCAAGCAACAAGACAACATCCAGCCTTTGTCTCAAATCTTCATCAACAAG 418
consensus_2289#1      ATCG---TGTGCGTGCGGGGCGGCGGCGGC-GGCGGCGGCGGCGG--CGGCGGCGAGGAG 214
                        *    *   *  **     * *  *  *  **    *   *    *  *  * *  **

consensus_2289#0      GTTGGGCCTAATGTATATTTGTCCAAAACTTCCTCTAAAT--GCCTAACCACCGTTAATG 476
consensus_2289#1      GATGGGTCGTCGGAGTG---GGACCAGTCGTCGTCGCGGTCGGCGCTGTCGCTGTTCAAG 271
                      * **** *    *  *    *  * *  * ** **    *  **     * * *** * *

consensus_2289#0      GAGCAAGATTCCCACTAGCAGATGATATATGTTAATTAATTAAGTTTTTTTTTTCACCAT 536
consensus_2289#1      GAGAAGGAGGAGGAG-ATCGAGCGGAAGAAGCTGGAGGTGCGGGAGAAGGTGTTCTCCAT 330
                      *** * **     *  * *    *  * * * *          *      * *** ****

consensus_2289#0      TTATAGCAAAGATAGACAGTGGAAATACACAATTGTATATCTTAATTTACTCGATGGATA 596
consensus_2289#1      GCTCGGCCG-GGTCGAGGAGGAGACCAAGCGCCT---CGCCTTCATCCGCCAG------- 379
                           **   * * **    *  *  *  *   *      *** **   *  *       

consensus_2289#0      AACACGGAACAACTTGTAAAGTTTAAACTAGACGAATAATATTGTGAAGTGGGTATTATA 656
consensus_2289#1      ------GAGCTGGAGGTGATGTC-GGATCCGACGCGGCGGGAGGTGGAGACGATACGGAA 432
                            ** *     ** * **    *   ****         *** **  * **    *

consensus_2289#0      ATACCCATTTCATAATGT-ATTCAGAAGATCATTACTACACGCTGCAGTTCTTATAGTAA 715
consensus_2289#1      GCGCA---TCGACAAGGTGAACCGCCAGCTCAAGCCGCTCGGCAAGAACTGCCTCAAGAA 489
                         *    *  * ** ** *  *   ** ***   *     **   *  *     *  **

consensus_2289#0      TGTTTTTTGGTACATTATATATTTATTCTTCTGAATTTATTATGTTATACTCTCATTAAG 775
consensus_2289#1      GGAGAAGGAATACAAGGCGTGCCTAGAGGCTTACAACGAGAAGAGCA-ACGAGAAAGCAA 548
                       *        ****     *   **      *  *   *  *    * **    *   * 

consensus_2289#0      TATTTCCATATGATCTTGAGCAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGC 835
consensus_2289#1      CGCTTGTGAACAGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGC 608
                         **    *     *   * ***************************************

consensus_2289#0      TCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCAT 895
consensus_2289#1      TCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCAT 668
                      ************************************************************

consensus_2289#0      GGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTT-ATGACAC 954
consensus_2289#1      GGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTTATGACAC 728
                      **************************************************** *******

consensus_2289#0      GAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGG 1014
consensus_2289#1      GAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGG 788
                      ************************************************************

consensus_2289#0      ATCACGAGTTTATCTATTCTGTATGGTTCA------------------------------ 1044
consensus_2289#1      ATCACGAGTTTATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTCAAGAGAAA 848
                      ******************************                              

consensus_2289#0      ---------------------------------------
consensus_2289#1      TCCTTTTTTTTCCCAATTAGAGGGCTCGAAACAGGATTA 887
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)