These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 761 fasta sequence [GCGGCCCATGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCCGCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGGTGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAACGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCCACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAAAAGGTCTTGGCAGAAGCAAAAGATCCTGATAAGCGCCCTGCGTTCCATGTTCGTTTCTTGAGGAAATCGGAGTTGTCAAATTGACTCTAAACTTTGATCAAAGATTGAAGAAGTGGATCCGACATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGCAGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGCTCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATGTTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTGAGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCATGGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGC] [+] EMBL CB652353 [GCGGCCCATGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCCGCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGGTGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAACGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCCACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAAAAGGTCTTGGCAGAAGCAAAAGATCCTGATAAGCGCCCTGCGTTCCATGTTCGTTTCTTGAGGAAATCGGAGTTGTCAAATTGACTCTAAACTTTGATCAAAGATTGAAGAAGTGGATCCGACATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGCAGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGCTCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATGTTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTGAGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCATGGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGC] consensusID : consensus_2293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence [CGGCCCTTTGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCCGCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGGTGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAACGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCCACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAGAAGGTCTTGGCAGAAGCAAAAGATCCTGATAGGCGCCCTGCGTTCCATGTTCGTTTCTTGAGGATTGAAGAAGTGGATCCGACATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGCAGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGCTCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATGTTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTGAGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCATGGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGCCAT] [+] EMBL CB676810 [CGGCCCTTTGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCCGCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGGTGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAACGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCCACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAGAAGGTCTTGGCAGAAGCAAAAGATCCTGATAGGCGCCCTGCGTTCCATGTTCGTTTCTTGAGGATTGAAGAAGTGGATCCGACATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGCAGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGCTCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATGTTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTGAGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCATGGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2293#0 GCGGCCCAT-GGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCC 59 consensus_2293#1 -CGGCCCTTTGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCC 59 ****** * ************************************************** consensus_2293#0 GCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGG 119 consensus_2293#1 GCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGG 119 ************************************************************ consensus_2293#0 TGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAA 179 consensus_2293#1 TGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAA 179 ************************************************************ consensus_2293#0 CGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCC 239 consensus_2293#1 CGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCC 239 ************************************************************ consensus_2293#0 ACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAAAA 299 consensus_2293#1 ACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAGAA 299 ********************************************************* ** consensus_2293#0 GGTCTTGGCAGAAGCAAAAGATCCTGATAAGCGCCCTGCGTTCCATGTTCGTTTCTTGAG 359 consensus_2293#1 GGTCTTGGCAGAAGCAAAAGATCCTGATAGGCGCCCTGCGTTCCATGTTCGTTTCTTGAG 359 ***************************** ****************************** consensus_2293#0 GAAATCGGAGTTGTCAAATTGACTCTAAACTTTGATCAAAGATTGAAGAAGTGGATCCGA 419 consensus_2293#1 GA----------------------------------------TTGAAGAAGTGGATCCGA 379 ** ****************** consensus_2293#0 CATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGC 479 consensus_2293#1 CATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGC 439 ************************************************************ consensus_2293#0 AGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGC 539 consensus_2293#1 AGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGC 499 ************************************************************ consensus_2293#0 TCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATG 599 consensus_2293#1 TCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATG 559 ************************************************************ consensus_2293#0 TTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTG 659 consensus_2293#1 TTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTG 619 ************************************************************ consensus_2293#0 AGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCAT 719 consensus_2293#1 AGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCAT 679 ************************************************************ consensus_2293#0 GGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGC--- 761 consensus_2293#1 GGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGCCAT 724 ****************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||