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Oryza sativa
cluster # 2302 cluster # 2302       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2302#0 length = 1516 sequences # 2  

consensusID : consensus_2302#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1516
fasta sequence
                              [TTGCCGATGTGCTTATCTGGTCCTGGTGTTTTCTGGGGTAAGAGCTAGCAACCGAATCTTGTATTTCCCACACAGATCCACGGCAACTGTCAGCAACATTGCTGCGAGTACTTGATACTGTATCAGTGTATTGCATCTATTGTTGGTGATCACTGTGTAGATCGACAAGGGTCCAAACCGACCACGGCGATAAGCCATGCGTCGTCTGGGACTTTCCCTTCACCACGACACGAGTCCAAGCTTCGCTGCCCTTGCTTGCAACCAGCGGCCGCCACCGAATGGCACCGTTCACGCGTGCTCCAAAAGCCGCCCACCTCAGTTGGAGCCGGGAAAAGTTGGCAAAAAGCCAATAAAAAAGACGATGCGCATTGCCCGGATTCCCACTTCGATCCCCCCTCACCTTCGTCTTCCTCTCGACCTCTCCGCTGTCTCTCCGATGGGCTCAGCTTCAGAGCATGATGTCAGGGAGCACCTGCTGGACGTGGACGGCGTCGGGGAAGAAGGGGCGGCGGCGGCGGCGGGGCCGAAGATACGGGTGCGGGGGCTGACGCGGCGGTCGGAGGCGAGAGGCGAGGAGATCCTGCGGGGCGTCGACCTGGACGTGCCGCGCGGGGTGGTCGTCGGCGTCATCGGCCCCAGCGGCAGCGGCAAGTCCACGCTGCTCCGCGCGCTCAACCGCCTCTGGGAGCCCGCGCCGGGCGCCGTGCTCCTCGACGGCGTCGACATCTGCGGCATCGACGTCCTCGCGCTCCGCCGGAAGGTCGGCATGCTCTTCCAGCTCCCCGCCATGTTCGACGGAACCGTGGCTGACAACGTGCGATACGGGCCACAGCTGCAGGGCAAGAAGCTGACGGACGCCGAGGTGCAGAGCCTACTGAGCCTCGCCGACCTGGACCCTGCTCTCTGCTCCAAGCCCGCCTCCGAGCTCTCCGTCGGCCAGGCGCAGCGCGTCGCATTGGCTCGCACCCTCGCCAACGATCCGGAGGTGCTTCTGCTGGATGAGCCGACGAGCGCGTTGGATCCCATCTCGACGCAGAACATCGAGGAGGCGATCGTGCGGCTGAAGAAGACGAGGGGGCTCACCACGGTGATGGTGTCGCACAGCGTGAAGCAGATCCAGCGGATCGCCGACCTGGTCTGCCTCCTCGTCGCCGGCGAGGTCGTCGAGGTGCTCCCGCCGTCGGAGCTGTCCGAGACCAAGCACCCCATGGCACGGCGCTTCCTCGAGCTCAGCTGAAGACTGGCACGACGATCTCCTCCTCCTCTGTATGACGCTTCTTCCGTTTGTGTGATTCGGATGTGTACCTGTAATCTTGAGAAGTTGAGATTATGCCTGTATACTATGTCGGAAATTTTGTGGTGAGATGATCTCAACCCTACTGGCCATAAAATGCATTTTGGTAAATATTCTTTTATCTAAACCCTAGTGGCCTCCGAGGCTCCGACATTGTATTTTTGCCTGTAATATTGGTACACTACTAAAATGAAATTTGGTACTCCCTCCGTCCCAGATTAT]

[+] EMBL AK109450             [TTGCCGATGTGCTTATCTGGTCCTGGTGTTTTCTGGGGTAAGAGCTAGCAACCGAATCTTGTATTTCCCACACAGATCCACGGCAACTGTCAGCAACATTGCTGCGAGTACTTGATACTGTATCAGTGTATTGCATCTATTGTTGGTGATCACTGTGTAGATCGACAAGGGTCCAAACCGACCACGGCGATAAGCCATGCGTCGTCTGGGACTTTCCCTTCACCACGACACGAGTCCAAGCTTCGCTGCCCTTGCTTGCAACCAGCGGCCGCCACCGAATGGCACCGTTCACGCGTGCTCCAAAAGCCGCCCACCTCAGTTGGAGCCGGGAAAAGTTGGCAAAAAGCCAATAAAAAAGACGATGCGCATTGCCCGGATTCCCACTTCGATCCCCCCTCACCTTCGTCTTCCTCTCGACCTCTCCGCTGTCTCTCCGATGGGCTCAGCTTCAGAGCATGATGTCAGGGAGCACCTGCTGGACGTGGACGGCGTCGGGGAAGAAGGGGCGGCGGCGGCGGCGGGGCCGAAGATACGGGTGCGGGGGCTGACGCGGCGGTCGGAGGCGAGAGGCGAGGAGATCCTGCGGGGCGTCGACCTGGACGTGCCGCGCGGGGTGGTCGTCGGCGTCATCGGCCCCAGCGGCAGCGGCAAGTCCACGCTGCTCCGCGCGCTCAACCGCCTCTGGGAGCCCGCGCCGGGCGCCGTGCTCCTCGACGGCGTCGACATCTGCGGCATCGACGTCCTCGCGCTCCGCCGGAAGGTCGGCATGCTCTTCCAGCTCCCCGCCATGTTCGACGGAACCGTGGCTGACAACGTGCGATACGGGCCACAGCTGCAGGGCAAGAAGCTGACGGACGCCGAGGTGCAGAGCCTACTGAGCCTCGCCGACCTGGACCCTGCTCTCTGCTCCAAGCCCGCCTCCGAGCTCTCCGTCGGCCAGGCGCAGCGCGTCGCATTGGCTCGCACCCTCGCCAACGATCCGGAGGTGCTTCTGCTGGATGAGCCGACGAGCGCGTTGGATCCCATCTCGACGCAGAACATCGAGGAGGCGATCGTGCGGCTGAAGAAGACGAGGGGGCTCACCACGGTGATGGTGTCGCACAGCGTGAAGCAGATCCAGCGGATCGCCGACCTGGTCTGCCTCCTCGTCGCCGGCGAGGTCGTCGAGGTGCTCCCGCCGTCGGAGCTGTCCGAGACCAAGCACCCCATGGCACGGCGCTTCCTCGAGCTCAGCTGAAGACTGGCACGACGATCTCCTCCTCCTCTGTATGACGCTTCTTCCGTTTGTGTGATTCGGATGTGTACCTGTAATCTTGAGAAGTTGAGATTATGCCTGTATACTATGTCGGAAATTTTGTGGTGAGATGATCTCAACCCTACTGGCCATAAAATGCATTTTGGTAAATATTCTTTTATCTAAACCCTAGTGGCCTCCGAGGCTCCGACATTGTATTTTTGCCTGTAATATTGGTACACTACTAAAATGAAATTTGGTACTCCCTCCGTCCCAGATTAT]
[+] EMBL AK064089             [                                                                                                                                                                                                                                                                   AACCAGCGGCCGCCACCGAATGGCACCGTTCACGCGTGCTCCAAAAGCCGCCCACCTCAGTTGGAGCCGGGAAAAGTTGGCAAAAAGCCAATAAAAAAGACGATGCGCATTGCCCGGATTCCCACTTCGATCCCCCCTCACCTTCGTCTTCCTCTCGACCTCTCCGCTGTCTCTCCGATGGGCTCAGCTTCAGAGCATGATGTCAGGGAGCACCTGCTGGACGTGGGCGGCGTCGGGGAAGAAGGGGCGGCGGCGGCGGCGGGGCCGAAGATACGGGTGCGGGGGCTGACGCGGCGGTCGGAGGCGAGAGGCGAGGAGATCCTGCGGGGCGTCGACCTGGACGTGCCGCGCGGGGTGGTCGTCGGCGTCATCGGCCCCAGCGGCAGCGGCAAGTCCACGCTGCTCCGCGCGCTCAACCGCCTCTGGGAGCCCGCGCCGGGCGCCGTGCTCCTCGACGGCGTCGACATCTGCGGCATCGACGTCCTCGCGCTCCGCCGGAAGGTCGGCATGCTCTTCCAGCTCCCCGCCATGTTCGACGGAACCGTGGCTGACAACGTGCGATACGGGCCACAGCTGCAGGGCAAGAAGCTGACGGACGCCGAGGTGCAGAGCCTACTGAGCCTCGCCGACCTGGACCCTGCTCTCTGCTCCAAGCCCGCCTCCGAGCTCTCCGTCGGCCAGGCGCAGCGCGTCGCATTGGCTCGCACCCTCGCCAACGACCCGGAGGTGCTTCTGCTGGATGAGCCGACGAGCGCGTTGGATCCCATCTCGACGCAGAACATCGAGGAGGCGATCGTGCGGCTGAAGAAGACGAGGGGGCTCACCACGGTGATGGTGTCGCACAGCGTGAAGCAGATCCAGCGGATCGCCGACCTGGTCTGCCTCCTCGTCGCCGGCGAGGTCGTCGAGGTGCTCCCGCCGTCGGAGCTGTCCGAGGCCAAGCACCCCATGGCACGGCGCTTCCTCGAGCTCAGCTGAAGACTGGCACGACGATCTCCTCCTCCTCTGTATGACGCTTCTTCCGTTTGTGTGATTCGGATGTGTACCTGTAATCTTGAGAAGTTGAGATTATGCCTGTATACTATGTCGGAAATTTTGTGGTGAGATGATCTCAACCCTACTGGCCATAAAATGCATTTTGGTAAATATTCTTTTATCTAAACCCTAGTGGCCTCCGAGGCTCCGACATTGTATTTTTGCCTGTAATATTGGTACACTACTAAAATGAAATTTGGTACTCCCTCCGTCCCAGATTAT]


>consensus_2302#0 TTGCCGATGTGCTTATCTGGTCCTGGTGTTTTCTGGGGTAAGAGCTAGCAACCGAATCTT GTATTTCCCACACAGATCCACGGCAACTGTCAGCAACATTGCTGCGAGTACTTGATACTG TATCAGTGTATTGCATCTATTGTTGGTGATCACTGTGTAGATCGACAAGGGTCCAAACCG ACCACGGCGATAAGCCATGCGTCGTCTGGGACTTTCCCTTCACCACGACACGAGTCCAAG CTTCGCTGCCCTTGCTTGCAACCAGCGGCCGCCACCGAATGGCACCGTTCACGCGTGCTC CAAAAGCCGCCCACCTCAGTTGGAGCCGGGAAAAGTTGGCAAAAAGCCAATAAAAAAGAC GATGCGCATTGCCCGGATTCCCACTTCGATCCCCCCTCACCTTCGTCTTCCTCTCGACCT CTCCGCTGTCTCTCCGATGGGCTCAGCTTCAGAGCATGATGTCAGGGAGCACCTGCTGGA CGTGGACGGCGTCGGGGAAGAAGGGGCGGCGGCGGCGGCGGGGCCGAAGATACGGGTGCG GGGGCTGACGCGGCGGTCGGAGGCGAGAGGCGAGGAGATCCTGCGGGGCGTCGACCTGGA CGTGCCGCGCGGGGTGGTCGTCGGCGTCATCGGCCCCAGCGGCAGCGGCAAGTCCACGCT GCTCCGCGCGCTCAACCGCCTCTGGGAGCCCGCGCCGGGCGCCGTGCTCCTCGACGGCGT CGACATCTGCGGCATCGACGTCCTCGCGCTCCGCCGGAAGGTCGGCATGCTCTTCCAGCT CCCCGCCATGTTCGACGGAACCGTGGCTGACAACGTGCGATACGGGCCACAGCTGCAGGG CAAGAAGCTGACGGACGCCGAGGTGCAGAGCCTACTGAGCCTCGCCGACCTGGACCCTGC TCTCTGCTCCAAGCCCGCCTCCGAGCTCTCCGTCGGCCAGGCGCAGCGCGTCGCATTGGC TCGCACCCTCGCCAACGATCCGGAGGTGCTTCTGCTGGATGAGCCGACGAGCGCGTTGGA TCCCATCTCGACGCAGAACATCGAGGAGGCGATCGTGCGGCTGAAGAAGACGAGGGGGCT CACCACGGTGATGGTGTCGCACAGCGTGAAGCAGATCCAGCGGATCGCCGACCTGGTCTG CCTCCTCGTCGCCGGCGAGGTCGTCGAGGTGCTCCCGCCGTCGGAGCTGTCCGAGACCAA GCACCCCATGGCACGGCGCTTCCTCGAGCTCAGCTGAAGACTGGCACGACGATCTCCTCC TCCTCTGTATGACGCTTCTTCCGTTTGTGTGATTCGGATGTGTACCTGTAATCTTGAGAA GTTGAGATTATGCCTGTATACTATGTCGGAAATTTTGTGGTGAGATGATCTCAACCCTAC TGGCCATAAAATGCATTTTGGTAAATATTCTTTTATCTAAACCCTAGTGGCCTCCGAGGC TCCGACATTGTATTTTTGCCTGTAATATTGGTACACTACTAAAATGAAATTTGGTACTCC CTCCGTCCCAGATTAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)