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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1786 fasta sequence
[GAAGAAACGCAAAAAACAAGGTCACACAACAAACACAGGACATCACCATCCCCCCATCCGTCTATAGGTTAAAAAGCCCAGCACCAAGCGCAACCATCAAGCTTTCGTCTCGGCAGCTCTTGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTCCACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTGCTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCTATCTTTTTTGGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGAGCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACATATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGATCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCTCCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCGCTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGCCTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTGATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTTATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAACGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCGGTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGTGGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGGGTGTCGCGAAGACAAGTTGACGCCTTCTGCCTTTGAGAAACACTCTGGAAGGCAGACTGCTGGAAAGTGGAGGAATACTGTGTGGGTCATGGTTCAAGGAGAGAAGGTTCCATTGTCAAAGACAGCTCTGCTGAAATACTACTCGCTGTCTCACAAATCTGCTAATGGTTCTAACAAAGGCCGTAATGGTCGCCTGTCACACCGAGATGAGTTTATTCACTGTACGGAATGTGGCAAGGAGAGGAGGTTTCGGCTCCGGTCTAAAGAAGAGTGCCGTATTTACCATGATGCTCTTGCTAAACCTAACTGGACATGTGCTGATTTGACAACTGATAGGGTCACCTGCGGCGATGAGGAGGAGCGCGCGAGCCGCAAGGTGCTGAGAGGCTGCTCCCGCTCCACGTCGTGCACCGGCTGCGTGAAGTGCGTGTGCTTCGGGTGCGAGGTCTGCCGCTTCACCGACTGCGGGTGCCAGACCTGCGTCGACTTCTACCATAACTCCAAGGAGTAGGAGGATGAAACAATGCATGAAACACCACCATGGGACATGGTAGGATGAAACACCAGCATGGTCGATATACCCTTGCAGACCCAGATGTTTTTTAGTCAAACCCCCCAGGTCCAATGATTCCCCGGCTTCACTGGGGGGGGCCTCCTATTCTGAGAACTGAGATGTTCTTTGACTAGCTTCTTCCCATAGACAACAACTAGTACCGGGGAAAGCCGGCCGATTTTTGCTTCATATAATTTACCAAAATTCTATTCA]
[+] EMBL AK064375 [GAAGAAACGCAAAAAACAAGGTCACACAACAAACACAGGACATCACCATCCCCCCATCCGTCTATAGGTTAAAAAGCCCAGCACCAAGCGCAACCATCAAGCTTTCGTCTCGGCAGCTCTTGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTCCACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTGCTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCTATCTTTTTTGGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGAGCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACATATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGATCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCTCCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCGCTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGCCTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTGATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTTATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAACGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCGGTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGTGGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGGGTGTCGCGAAGACAAGTTGACGCCTTCTGCCTTTGAGAAACACTCTGGAAGGCAGACTGCTGGAAAGTGGAGGAATACTGTGTGGGTCATGGTTCAAGGAGAGAAGGTTCCATTGTCAAAGACAGCTCTGCTGAAATACTACTCGCTGTCTCACAAATCTGCTAATGGTTCTAACAAAGGCCGTAATGGTCGCCTGTCACACCGAGATGAGTTTATTCACTGTACGGAATGTGGCAAGGAGAGGAGGTTTCGGCTCCGGTCTAAAGAAGAGTGCCGTATTTACCATGATGCTCTTGCTAAACCTAACTGGACATGTGCTGATTTGACAACTGATAGGGTCACCTGCGGCGATGAGGAGGAGCGCGCGAGCCGCAAGGTGCTGAGAGGCTGCTCCCGCTCCACGTCGTGCACCGGCTGCGTGAAGTGCGTGTGCTTCGGGTGCGAGGTCTGCCGCTTCACCGACTGCGGGTGCCAGACCTGCGTCGACTTCTACCATAACTCCAAGGAGTAGGAGGATGAAACAATGCATGAAACACCACCATGGGACATGGTAGGATGAAACACCAGCATGGTCGATATACCCTTGCAGACCCAGATGTTTTTTAGTCAAACCCCCCAGGTCCAATGATTCCCCGGCTTCACTGGGGGGGGCCTCCTATTCTGAGAACTGAGATGTTCTTTGACTAGCTTCTTCCCATAGACAACAACTAGTACCGGGGAAAGCCGGCCGATTTTTGCTTCATATAATTTACCAAAATTCTATTCA]
consensusID : consensus_2315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1369 fasta sequence
[TCTCGGCAGCTCTTGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTCCACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTGCTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCCATCTTTTTTGGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGAGCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACATATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGATCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCTCCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCGCTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGCCTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTGATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTTATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAACGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCGGTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGTGGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGGGTGTCGCGAAGGTCCGTGCTCGCCACTGTGCATCATCAGTACACCACGTCCTTTTTGCTTGCTTGCTTGTTTGTCTCGTTGTTCTTGATTTCATGTCAGCGCGCGCGTCGGTGCACGGGTGGTGTTTGATCTCTTTGGTTGTGGCGTCTTGCTCCCATGACTGGACCTGCATGCAATGCCGGCTCATGCGCCTCGCCGCTGCCTGCGCCCAGCGTCGCCTGTTTCTTGTACTTTGTACCATGCTCCTGCCCATGCATTGCTAGTCTGGCTCGCGGGACTGTCGATTTCGGCAATTAAATCATCCCCTTTTCTGCAATCTGCATGTTCATGATGTATCTTTTTTTTTAGACATGTCCATGATGTATCTGAGCGTAATATCGCCTGCATCTTACCTTTGGTTTAGGACCATTAGGTTCCTCTTCTTCTGTGGTACCTAATGCACGTAAGTTGAATTTT]
[+] EMBL AK108614 [TCTCGGCAGCTCTTGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTCCACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTGCTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCCATCTTTTTTGGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGAGCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACATATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGATCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCTCCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCGCTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGCCTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTGATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTTATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAACGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCGGTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGTGGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGGGTGTCGCGAAGGTCCGTGCTCGCCACTGTGCATCATCAGTACACCACGTCCTTTTTGCTTGCTTGCTTGTTTGTCTCGTTGTTCTTGATTTCATGTCAGCGCGCGCGTCGGTGCACGGGTGGTGTTTGATCTCTTTGGTTGTGGCGTCTTGCTCCCATGACTGGACCTGCATGCAATGCCGGCTCATGCGCCTCGCCGCTGCCTGCGCCCAGCGTCGCCTGTTTCTTGTACTTTGTACCATGCTCCTGCCCATGCATTGCTAGTCTGGCTCGCGGGACTGTCGATTTCGGCAATTAAATCATCCCCTTTTCTGCAATCTGCATGTTCATGATGTATCTTTTTTTTTAGACATGTCCATGATGTATCTGAGCGTAATATCGCCTGCATCTTACCTTTGGTTTAGGACCATTAGGTTCCTCTTCTTCTGTGGTACCTAATGCACGTAAGTTGAATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2315#0 GAAGAAACGCAAAAAACAAGGTCACACAACAAACACAGGACATCACCATCCCCCCATCCG 60
consensus_2315#1 ------------------------------------------------------------
consensus_2315#0 TCTATAGGTTAAAAAGCCCAGCACCAAGCGCAACCATCAAGCTTTCGTCTCGGCAGCTCT 120
consensus_2315#1 -----------------------------------------------TCTCGGCAGCTCT 13
*************
consensus_2315#0 TGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTC 180
consensus_2315#1 TGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTC 73
************************************************************
consensus_2315#0 CACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTG 240
consensus_2315#1 CACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTG 133
************************************************************
consensus_2315#0 CTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCTATCTTTTTT 300
consensus_2315#1 CTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCCATCTTTTTT 193
************************************************** *********
consensus_2315#0 GGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGA 360
consensus_2315#1 GGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGA 253
************************************************************
consensus_2315#0 GCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACAT 420
consensus_2315#1 GCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACAT 313
************************************************************
consensus_2315#0 ATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGA 480
consensus_2315#1 ATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGA 373
************************************************************
consensus_2315#0 TCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCT 540
consensus_2315#1 TCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCT 433
************************************************************
consensus_2315#0 CCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCG 600
consensus_2315#1 CCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCG 493
************************************************************
consensus_2315#0 CTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGC 660
consensus_2315#1 CTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGC 553
************************************************************
consensus_2315#0 CTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTG 720
consensus_2315#1 CTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTG 613
************************************************************
consensus_2315#0 ATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTT 780
consensus_2315#1 ATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTT 673
************************************************************
consensus_2315#0 ATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAA 840
consensus_2315#1 ATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAA 733
************************************************************
consensus_2315#0 CGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCG 900
consensus_2315#1 CGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCG 793
************************************************************
consensus_2315#0 GTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGT 960
consensus_2315#1 GTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGT 853
************************************************************
consensus_2315#0 GGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGG 1020
consensus_2315#1 GGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGG 913
************************************************************
consensus_2315#0 GTGTCGCGAAGACAAGTTGACGCCTTCTGCCTTTGAGAAACACTCTGGAAGGCAGACTGC 1080
consensus_2315#1 GTGTCGCGAAGGTCCGTGCTCGCCA-CTGTGCATCATCAGTACACCACGTC-CTTTTTGC 971
*********** ** **** *** * * * ** * * ***
consensus_2315#0 TGGAAAGTGGAGGAATACTGTGTGGGTCATGGTTCAAGGAGAGAAGGTTCCATTGTCAAA 1140
consensus_2315#1 TTGCTTGC---------TTGTTTGTCTCGTTGTTCTTGA--------TTTCAT-GTCAGC 1013
* * * *** ** ** * **** * ** *** ****
consensus_2315#0 GACAGCTCTGCTGAAATACTACTCGCTGTCTCACAAATCTGCTAATGGT-TCTAACAAAG 1199
consensus_2315#1 GCGCGCGTCGGTGCACGGGT----GGTGTTTGATCTCTTTGGTTGTGGCGTCTTGCTCCC 1069
* ** * ** * * * *** * * * ** * *** *** *
consensus_2315#0 GCCGTAATGGTCGCCTGTCACACCGAGATGAGTTTATTCACTGTACGGAATGTGGCAAGG 1259
consensus_2315#1 ATGACTGGACCTGCATGCAATGCCG-GCTCATGCGCCTCGCCG--CTGCCTGCGCCCAGC 1126
** ** * *** * * * ** * * * * ** * * **
consensus_2315#0 AGAGGAGGTTTCGGCTCCGGTCTAAAGAAGAGTGCCGTATTTACCATGATGCTCTTGCTA 1319
consensus_2315#1 GTCGCCTGTTTC--TTGTACTTTGTACCATGCTCCTGCCCATGCATTGCTAGTCTGGCTC 1184
* ***** * * * * * * * * * * ** * *** ***
consensus_2315#0 AACCTAACTGGACATGTGCTGATTT-GACAACTGA-TAGGGTCACCTGCGGCGATGAGGA 1377
consensus_2315#1 ------GCGGGAC---TGTCGATTTCGGCAATTAAATCATCCCCTTTTCTGCAATCTGCA 1235
* **** ** ***** * *** * * * * * * ** ** * *
consensus_2315#0 GGAGCGCG-CGAGCCGCAAGGTGCTGAGAGGCTGCTCCCGCTCCACGTCGTG-CACCGGC 1435
consensus_2315#1 TGTTCATGATGTATCTTTTTTTTTAGACATGTCCATGATGTATCTGAGCGTAATATCGCC 1295
* * * * * * ** * * * * * *** * ** *
consensus_2315#0 TGCGTGAAGTGCGTGTGCTTCGGGTGCGAGGTCTGCCGCTTCACCGACTGCGGGTGCCAG 1495
consensus_2315#1 TGCATC--TTACCTTTGGTTTAGGACCATTAGGTTCCTCTTCTTCTGTGGTACCTAATGC 1353
*** * * * * ** ** ** * * ** **** * * *
consensus_2315#0 ACCTGCGTCGACTTCTACCATAACTCCAAGGAGTAGGAGGATGAAACAATGCATGAAACA 1555
consensus_2315#1 ACGTAAGTTGAATTTT-------------------------------------------- 1369
** * ** ** ** *
consensus_2315#0 CCACCATGGGACATGGTAGGATGAAACACCAGCATGGTCGATATACCCTTGCAGACCCAG 1615
consensus_2315#1 ------------------------------------------------------------
consensus_2315#0 ATGTTTTTTAGTCAAACCCCCCAGGTCCAATGATTCCCCGGCTTCACTGGGGGGGGCCTC 1675
consensus_2315#1 ------------------------------------------------------------
consensus_2315#0 CTATTCTGAGAACTGAGATGTTCTTTGACTAGCTTCTTCCCATAGACAACAACTAGTACC 1735
consensus_2315#1 ------------------------------------------------------------
consensus_2315#0 GGGGAAAGCCGGCCGATTTTTGCTTCATATAATTTACCAAAATTCTATTCA 1786
consensus_2315#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||