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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1851 fasta sequence
[CTCTTCCTCCTCCGTCTCTGCATCTCACAGGGCAGGAGCAGCGTTGAACTAACCGGCGGCGAGAGATGGCGGCGGGAGCAGGGGCATATAGGTCCCGAACCCTAGATCGGAAACCCGACAGCGGCCCAGATCGGCGATGGGTGGCGGGAGGACCGGGATAGCTGCAAGCTGCGTCGGGAGCTTGATGATGGTTGCGGCGACGATTCATCGGCGACGACGGCCGCGGCGATGGTTGCGGCGGTGATTTGTCGGAAGCTCGATGTGACGGTGGCCGCGGCGAACTTGATGCGACGCCGGCACGGGGATGCGGCAAAGAGAAGAGAGGGGAAGAGGGTAAGGCCGGCGATGGTTGCAACGGCCATTCATCGGGAGCTTGACGATGGTTACGGCGGCGATTCGTCGGAAGCTCGACGCGATGGCTGCCGCAGCGGACTCGATGCGACGCGGCGGCGGCCGCGGCGGACTCGATGCGATGCAACGGCGGCAGCAGCGGACTCGATGCGACGCGACGGTGGCCGCGGCGGACTCGATGCGACGTGACGGCGGCAGCGGCGGACTCGATGCGACGCGACGGCGGCAGCGGCGGACTCGCTGGCACGGAGATGTGGCAAAGCTTTGGAGAATACGAGAGATTCATTCATTCATGGCACGTCGCCGACGAGTATCTTGTCGCCCTCGTCGTCACGAGCGTGTACTCGCCGGACGCCGCTGCCGCTGTCGAGGAGCCCGGCAATCGCCTCCTCGCCTCCTCCCGTGCAGCTCTTGCCGCCGGCGGCGGCGGACATGGTTGGGTCCCTTTGAGCCACCACGAGCAAGCAAGCAAAACGCCATCAAGAGGGTGAGGGATTAGCGCCACCCTAAATTTGTTTAGCCCGATCATACCCCTCCTAAATCAACGGTTAGATTAAATTGGTACCTCATGGTACCTCGTACCTCATAGTACCTCGTATCTCATGGTACCTCGTAGTACCTCCTCAAGGATGGGAAAGATGCTCTTAGACTTTAGTTAGCTTGTACCCAATCCAGTTGCGTAAAATTTGTGTGAGAAGCCCTGGTGTTAATTCCTCTAAGCTTTACACTGTGCTACACTACATATGCATTCCTTGAATACAAAAATAGTCTCCTATAGCAAGGCTTAGATGTTGAATTCTAAGTCCCTAATTGTGACCGTCATCTTTCACCCTGACAGCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGGTTTGGACTTCTAATCTCCTACAAACTTAAAGCATCTCATTAATTTGCCTTTATAAGCTAAGAATAATCTTGTGTTATCTTCTCTTTGCAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTTGTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAAATTATGGCTGTGTTTAGTTCAGCGCAAAATTTAGATTTTGGTTGAAATTGAAGAT]
[+] EMBL AK106122 [CTCTTCCTCCTCCGTCTCTGCATCTCACAGGGCAGGAGCAGCGTTGAACTAACCGGCGGCGAGAGATGGCGGCGGGAGCAGGGGCATATAGGTCCCGAACCCTAGATCGGAAACCCGACAGCGGCCCAGATCGGCGATGGGTGGCGGGAGGACCGGGATAGCTGCAAGCTGCGTCGGGAGCTTGATGATGGTTGCGGCGACGATTCATCGGCGACGACGGCCGCGGCGATGGTTGCGGCGGTGATTTGTCGGAAGCTCGATGTGACGGTGGCCGCGGCGAACTTGATGCGACGCCGGCACGGGGATGCGGCAAAGAGAAGAGAGGGGAAGAGGGTAAGGCCGGCGATGGTTGCAACGGCCATTCATCGGGAGCTTGACGATGGTTACGGCGGCGATTCGTCGGAAGCTCGACGCGATGGCTGCCGCAGCGGACTCGATGCGACGCGGCGGCGGCCGCGGCGGACTCGATGCGATGCAACGGCGGCAGCAGCGGACTCGATGCGACGCGACGGTGGCCGCGGCGGACTCGATGCGACGTGACGGCGGCAGCGGCGGACTCGATGCGACGCGACGGCGGCAGCGGCGGACTCGCTGGCACGGAGATGTGGCAAAGCTTTGGAGAATACGAGAGATTCATTCATTCATGGCACGTCGCCGACGAGTATCTTGTCGCCCTCGTCGTCACGAGCGTGTACTCGCCGGACGCCGCTGCCGCTGTCGAGGAGCCCGGCAATCGCCTCCTCGCCTCCTCCCGTGCAGCTCTTGCCGCCGGCGGCGGCGGACATGGTTGGGTCCCTTTGAGCCACCACGAGCAAGCAAGCAAAACGCCATCAAGAGGGTGAGGGATTAGCGCCACCCTAAATTTGTTTAGCCCGATCATACCCCTCCTAAATCAACGGTTAGATTAAATTGGTACCTCATGGTACCTCGTACCTCATAGTACCTCGTATCTCATGGTACCTCGTAGTACCTCCTCAAGGATGGGAAAGATGCTCTTAGACTTTAGTTAGCTTGTACCCAATCCAGTTGCGTAAAATTTGTGTGAGAAGCCCTGGTGTTAATTCCTCTAAGCTTTACACTGTGCTACACTACATATGCATTCCTTGAATACAAAAATAGTCTCCTATAGCAAGGCTTAGATGTTGAATTCTAAGTCCCTAATTGTGACCGTCATCTTTCACCCTGACAGCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGGTTTGGACTTCTAATCTCCTACAAACTTAAAGCATCTCATTAATTTGCCTTTATAAGCTAAGAATAATCTTGTGTTATCTTCTCTTTGCAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTTGTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAAATTATGGCTGTGTTTAGTTCAGCGCAAAATTTAGATTTTGGTTGAAATTGAAGAT]
consensusID : consensus_232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence
[TCCGGACCCAAGCCCCGCTCGAGCGAGCGCGATGGCCTCGGCGAGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCGCTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGCCCGCCCACGCCGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCATGCTTGGTTAGCCAAGAGGGGATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTTGTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAAATTATGGCTG]
[+] EMBL AK101905 [TCCGGACCCAAGCCCCGCTCGAGCGAGCGCGATGGCCTCGGCGAGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCGCTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGCCCGCCCACGCCGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCATGCTTGGTTAGCCAAGAGGGGATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTTGTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAAATTATGGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_232#0 CTCTTCCTCCTCCGTCTCTGCATCTCACAGGGCAGGAGCAGCGTTGAACTAACCGGCGGC 60
consensus_232#1 ------------------------------------------------------------
consensus_232#0 GAGAGATGGCGGCGGGAGCAGGGGCATATAGGTCCCGAACCCTAGATCGGAAACCCGACA 120
consensus_232#1 ------------------------------------------------------------
consensus_232#0 GCGGCCCAGATCGGCGATGGGTGGCGGGAGGACCGGGATAGCTGCAAGCTGCGTCGGGAG 180
consensus_232#1 ------------------------------------------------------------
consensus_232#0 CTTGATGATGGTTGCGGCGACGATTCATCGGCGACGACGGCCGCGGCGATGGTTGCGGCG 240
consensus_232#1 ------------------------------------------------------------
consensus_232#0 GTGATTTGTCGGAAGCTCGATGTGACGGTGGCCGCGGCGAACTTGATGCGACGCCGGCAC 300
consensus_232#1 ------------------------------------------------------------
consensus_232#0 GGGGATGCGGCAAAGAGAAGAGAGGGGAAGAGGGTAAGGCCGGCGATGGTTGCAACGGCC 360
consensus_232#1 ------------------------------------------------------------
consensus_232#0 ATTCATCGGGAGCTTGACGATGGTTACGGCGGCGATTCGTCGGAAGCTCGACGCGATGGC 420
consensus_232#1 ------------------------------------------------------------
consensus_232#0 TGCCGCAGCGGACTCGATGCGACGCGGCGGCGGCCGCGGCGGACTCGATGCGATGCAACG 480
consensus_232#1 ------------------------------------------------------------
consensus_232#0 GCGGCAGCAGCGGACTCGATGCGACGCGACGGTGGCCGCGGCGGACTCGATGCGACGTGA 540
consensus_232#1 ------------------------------------------------------------
consensus_232#0 CGGCGGCAGCGGCGGACTCGATGCGACGCGACGGCGGCAGCGGCGGACTCGCTGGCACGG 600
consensus_232#1 ------------------------------------------------------------
consensus_232#0 AGATGTGGCAAAGCTTTGGAGAATACGAGAGATTCATTCATTCATGGCACGTCGCCGACG 660
consensus_232#1 ------------------------------------------------------------
consensus_232#0 AGTATCTTGTCGCCCTCGTCGTCACGAGCGTGTACTCGCCGGACGCCGCTGCCGCTGTCG 720
consensus_232#1 ----------------TCCGGACCCAAGCCC-CGCTCGAGCGAGCGCGATGGCCTCGGCG 43
* * * *** **** ** ** ** * * **
consensus_232#0 AGGAGCCCGGCAATCGCCTCCTCGCCTCCTCCCGTGCA-GCTCTTGCCGCCG--GCGGCG 777
consensus_232#1 AGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCG 103
*** ** ** * ** *** * * ***** ** ******* ** ***
consensus_232#0 GCGGACATGGTTGGGTCCCTTTGAGCCACCACGAGCAAGCAAGCAAAACGCCATCAAGAG 837
consensus_232#1 CTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCA-GCGGAGC-CCGCCCACGC 161
* * * * *** * **** * * ****** ** * * ** * *
consensus_232#0 GGTGAGGGATTAGCGCCACCCTAAATTTGTTTAGC-CCGATCATACCCCTCCTAAATCAA 896
consensus_232#1 CGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCC- 220
*** * * * * * ** * * **** * * ** * **
consensus_232#0 CGGTTAGATTAAATTGGTACCTCATGGTACCTCGTACCTCATAGTACCTCGTATCTCATG 956
consensus_232#1 CCCTTCGATCCCGCCAAGAGGGAAGGGTA-----TATCTCCTGGGACGAC-TACTTCATG 274
* ** *** * * **** ** *** * * ** * ** *****
consensus_232#0 GTACCTCGTAGTACCTCCTCAAGGATGGGAAAGATGCTCTTAGACTTTAGTTAGCTTGTA 1016
consensus_232#1 GCGA-TCGCGTTCCTTTC--------GGCCAAGCGGTCCAAGGATCCTAATCGGCAGGT- 324
* *** * * * * ** *** * * ** ** * ** **
consensus_232#0 CCCAATCCAGTTGCGTAAAATTTGTGTGAGAAGCCCTGGTGTTAATTCCTCTAAGCTTTA 1076
consensus_232#1 ----------TGGAGCATGCTTGGTTAGCCAAGA---GGGGATAATCCT----AGGAATA 367
* * * * ** ** * *** ** * **** * ** **
consensus_232#0 CACTGTGCTACACTACATATGCATTCCTTGAATACAAAAATAGTCTCCTATAGCAAGGCT 1136
consensus_232#1 GGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTG----GGCAAAG-- 421
* * * * * * ** ** * * * ** ** ** **** *
consensus_232#0 TAGATGTTGAATTCTAAGTCCCTAATTGTGACCGTCATCTTTCACCCTGACAGCTATGTT 1196
consensus_232#1 -AAATCTGCCAAGGGAGATCC---ATTGGAGACAAAAT-----ACCC------CTATGTT 466
* ** * * * *** **** * ** **** *******
consensus_232#0 GTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGGTT 1256
consensus_232#1 GTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAG--- 523
*********************************************************
consensus_232#0 TGGACTTCTAATCTCCTACAAACTTAAAGCATCTCATTAATTTGCCTTTATAAGCTAAGA 1316
consensus_232#1 ------------------------------------------------------------
consensus_232#0 ATAATCTTGTGTTATCTTCTCTTTGCAGAAATTATATGTTACCATGTTCCCCTGCAATGA 1376
consensus_232#1 ----------------------------AAATTATATGTTACCATGTTCCCCTGCAATGA 555
********************************
consensus_232#0 GTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAG 1436
consensus_232#1 GTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAG 615
************************************************************
consensus_232#0 GATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGT 1496
consensus_232#1 GATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGT 675
************************************************************
consensus_232#0 AAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCG 1556
consensus_232#1 AAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCG 735
************************************************************
consensus_232#0 AAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTT 1616
consensus_232#1 AAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTT 795
************************************************************
consensus_232#0 GTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATG 1676
consensus_232#1 GTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATG 855
************************************************************
consensus_232#0 GCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGG 1736
consensus_232#1 GCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGG 915
************************************************************
consensus_232#0 TGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAA 1796
consensus_232#1 TGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAA 975
************************************************************
consensus_232#0 ATTATGGCTGTGTTTAGTTCAGCGCAAAATTTAGATTTTGGTTGAAATTGAAGAT 1851
consensus_232#1 ATTATGGCTG--------------------------------------------- 985
**********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||