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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1042 fasta sequence
[AAGTATGACATGCTTACTTTTTTTGAGCACTTTGACAGATTGGTGGGAGATAAGAGAAATGAGGAGGTGATTTCAAAGCAACACATACTACACCAAAGCTAAAGGCAGAGTTGAGAATACTGAGAGATATGGCAGAAGTTTATACTCTAGCAGTCTTAAGATATTTGCGGAAGAAGTAATGCAGTCTTTGAATTGTGACATATTCTACTGCGGTGATGTTGATGCAGAAAATAAAGGTTAGTGGAAAGAATCATGAACATGTTAAATTCTCACCGTTGGAATCTACTGTTAAGTGCAGTTGCAAGAAGTTTGAATTCGTCGGCATCCTGTGCTCTCATGCATTGAAAATACTTGACATCAACAATATCAAATCAGTTTCGCAATAGTATATATTAAAAAGATGGACAATTGATGCAAAAGTACTACGTGTAAGTGGAAGTAGCAATATGCATGATGATCCTAGAATTAAGTTATCATATCGGTACTCCTCATTGTGCAAAATGTTTGTTAAAATAGCTTGTCGAGTTGCAAAATCTGAAGAAACATACTCCATGTCAACTAATTGTGCTGAAAAATTGGCAGAAGATATAGAGAACTTCTTGAAAATTAGAGGTGATCCAGATTTAGACAGCTCCCCTTCCCCACAAGTTGCAAAAGGAAATCAGATCATGGCTAGTAAACCAAAAGGCATTGAGCTCAAGAGAAAGGAAATTTGTGGTTCAGCTAGACCTATTGGTGGCTTAGAGAAATCATCTCAGAACGGGAAAAAGAAGAAGAATGATGACTCCCCAGTCGAGGTAGTAGAACTTCAACCTGTGACAGAGATGCAGCCACAGCCATATGCTACAGTACTGGGTAATCTAGAGGTTCCCAATGACCAAGCATTTTTACATGTATCACAGTCAGCGTTCTAATTAGCGGGCTATAGCGGTTTTGCCGAGCAACAGCTAGGAGAAGTCAATTTTGCAGCTAAGCTTCGCGGGCCGCTATTAGCTGTATTTAGCCCGACATAGCCGCTAAACGGGCTGAATGAGCGGTCGCT]
[+] EMBL AK060251 [AAGTATGACATGCTTACTTTTTTTGAGCACTTTGACAGATTGGTGGGAGATAAGAGAAATGAGGAGGTGATTTCAAAGCAACACATACTACACCAAAGCTAAAGGCAGAGTTGAGAATACTGAGAGATATGGCAGAAGTTTATACTCTAGCAGTCTTAAGATATTTGCGGAAGAAGTAATGCAGTCTTTGAATTGTGACATATTCTACTGCGGTGATGTTGATGCAGAAAATAAAGGTTAGTGGAAAGAATCATGAACATGTTAAATTCTCACCGTTGGAATCTACTGTTAAGTGCAGTTGCAAGAAGTTTGAATTCGTCGGCATCCTGTGCTCTCATGCATTGAAAATACTTGACATCAACAATATCAAATCAGTTTCGCAATAGTATATATTAAAAAGATGGACAATTGATGCAAAAGTACTACGTGTAAGTGGAAGTAGCAATATGCATGATGATCCTAGAATTAAGTTATCATATCGGTACTCCTCATTGTGCAAAATGTTTGTTAAAATAGCTTGTCGAGTTGCAAAATCTGAAGAAACATACTCCATGTCAACTAATTGTGCTGAAAAATTGGCAGAAGATATAGAGAACTTCTTGAAAATTAGAGGTGATCCAGATTTAGACAGCTCCCCTTCCCCACAAGTTGCAAAAGGAAATCAGATCATGGCTAGTAAACCAAAAGGCATTGAGCTCAAGAGAAAGGAAATTTGTGGTTCAGCTAGACCTATTGGTGGCTTAGAGAAATCATCTCAGAACGGGAAAAAGAAGAAGAATGATGACTCCCCAGTCGAGGTAGTAGAACTTCAACCTGTGACAGAGATGCAGCCACAGCCATATGCTACAGTACTGGGTAATCTAGAGGTTCCCAATGACCAAGCATTTTTACATGTATCACAGTCAGCGTTCTAATTAGCGGGCTATAGCGGTTTTGCCGAGCAACAGCTAGGAGAAGTCAATTTTGCAGCTAAGCTTCGCGGGCCGCTATTAGCTGTATTTAGCCCGACATAGCCGCTAAACGGGCTGAATGAGCGGTCGCT]
consensusID : consensus_2320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[AGAATACCGTTAGAGATGGCAGAAGTTTATACTCTAGCAGTCTTAAGATATTTGCGGAAGAAGTAATGCAGTCTTTGAATTGTGACATATTCTACTGCGGTGATGTTGATGCAGAAAATAAAGAAGATATAGAGAACTTCTTGAAAATTAGAGGTGATCCAGATTTAGACAGCTCCCCTTCCCCACAAGTTGCAAAAGGAAATCAGATCATGGCTAGTAAACCAAAAGGCATTGAGCTCAAGAGAAAGGAAATTTGTGGTTCAGCTAGACCTATTGGTGGCTTAGAGAAATCATCTCAGAACGGGAAAAAGAAGAAGAATGATGACTCCCCAGCCGAGGTAGTAGAACTTCAACCTGTGACAGAGATGCAGCCACAGCCATATGCTACAGTACTGGGTAATCTAGAGGTTCCCAATGACCAAGCATTTTTACATGTATCACAGTCAGCGTTCTAATTAGCGGGCTATAGCGGTTTTGCCGAGCAACAGCTAGGAGAAGTCAATTTTGCAGCTAAGCTTCGCGGGCCGCTATTAGCTGTATTTAGCCCGACATAGCCGCTAAACGGGCTGAATGAGCGGTCGCT]
[+] EMBL CB654415 [AGAATACCGTTAGAGATGGCAGAAGTTTATACTCTAGCAGTCTTAAGATATTTGCGGAAGAAGTAATGCAGTCTTTGAATTGTGACATATTCTACTGCGGTGATGTTGATGCAGAAAATAAAGAAGATATAGAGAACTTCTTGAAAATTAGAGGTGATCCAGATTTAGACAGCTCCCCTTCCCCACAAGTTGCAAAAGGAAATCAGATCATGGCTAGTAAACCAAAAGGCATTGAGCTCAAGAGAAAGGAAATTTGTGGTTCAGCTAGACCTATTGGTGGCTTAGAGAAATCATCTCAGAACGGGAAAAAGAAGAAGAATGATGACTCCCCAGCCGAGGTAGTAGAACTTCAACCTGTGACAGAGATGCAGCCACAGCCATATGCTACAGTACTGGGTAATCTAGAGGTTCCCAATGACCAAGCATTTTTACATGTATCACAGTCAGCGTTCTAATTAGCGGGCTATAGCGGTTTTGCCGAGCAACAGCTAGGAGAAGTCAATTTTGCAGCTAAGCTTCGCGGGCCGCTATTAGCTGTATTTAGCCCGACATAGCCGCTAAACGGGCTGAATGAGCGGTCGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2320#0 AAGTATGACATGCTTACTTTTTTTGAGCACTTTGACAGATTGGTGGGAGATAAGAGAAAT 60
consensus_2320#1 ------------------------------------------------------------
consensus_2320#0 GAGGAGGTGATTTCAAAGCAACACATACTACACCAAAGCTAAAGGCAGAGTTGAGAATAC 120
consensus_2320#1 ------------------------------------------------------------
consensus_2320#0 TGAGAGATATGGCAGAAGTTTATACTCTAGCAGTCTTAAGATATTTGCGGAAGAAGTAAT 180
consensus_2320#1 ------------------------------------------------------------
consensus_2320#0 GCAGTCTTTGAATTGTGACATATTCTACTGCGGTGATGTTGATGCAGAAAATAAAGGTTA 240
consensus_2320#1 ------------------------------------------------------------
consensus_2320#0 GTGGAAAGAATCATGAACATGTTAAATTCTCACCGTTGGAATCTACTGTTAAGTGCAGTT 300
consensus_2320#1 ------------------------------------------------------------
consensus_2320#0 GCAAGAAGTTTGAATTCGTCGGCATCCTGTGCTCTCATGCATTGAAAATACTTGACATCA 360
consensus_2320#1 ------------------------------------------------------------
consensus_2320#0 ACAATATCAAATCAGTTTCGCAATAGTATATATTAAAAAGATGGACAATTGATGCAAAAG 420
consensus_2320#1 ------------------------------------------------------------
consensus_2320#0 TACTACGTGTAAGTGGAAGTAGCAATATGCATGATGATCCTAGAATTAAGTTATCATATC 480
consensus_2320#1 ---------------------AGAATACCGTTAGAGATGGCAG----AAGTTTATACTCT 35
**** * *** ** ***** *
consensus_2320#0 GGTACTCCTCATTGTGCAAAATGTTTGTTAAAATAGCTTGTCGAGTTGCAAAATCTGAAG 540
consensus_2320#1 AGCAGTCTT--------AAGATATTTGCGGAAGAAG-TAATGCAGTCTTTGAATT----G 82
* * ** * ** ** **** ** ** * * *** *** *
consensus_2320#0 AAACATACTCCATGTCAACTAATTGTGCTGAAAAATTGGCAGAAGATATAGAGAACTTCT 600
consensus_2320#1 TGACATATTCTACTGCGG-TGATGTTGATGCAGAAAATAAAGAAGATATAGAGAACTTCT 141
***** ** * * * ** ** ** * ** ********************
consensus_2320#0 TGAAAATTAGAGGTGATCCAGATTTAGACAGCTCCCCTTCCCCACAAGTTGCAAAAGGAA 660
consensus_2320#1 TGAAAATTAGAGGTGATCCAGATTTAGACAGCTCCCCTTCCCCACAAGTTGCAAAAGGAA 201
************************************************************
consensus_2320#0 ATCAGATCATGGCTAGTAAACCAAAAGGCATTGAGCTCAAGAGAAAGGAAATTTGTGGTT 720
consensus_2320#1 ATCAGATCATGGCTAGTAAACCAAAAGGCATTGAGCTCAAGAGAAAGGAAATTTGTGGTT 261
************************************************************
consensus_2320#0 CAGCTAGACCTATTGGTGGCTTAGAGAAATCATCTCAGAACGGGAAAAAGAAGAAGAATG 780
consensus_2320#1 CAGCTAGACCTATTGGTGGCTTAGAGAAATCATCTCAGAACGGGAAAAAGAAGAAGAATG 321
************************************************************
consensus_2320#0 ATGACTCCCCAGTCGAGGTAGTAGAACTTCAACCTGTGACAGAGATGCAGCCACAGCCAT 840
consensus_2320#1 ATGACTCCCCAGCCGAGGTAGTAGAACTTCAACCTGTGACAGAGATGCAGCCACAGCCAT 381
************ ***********************************************
consensus_2320#0 ATGCTACAGTACTGGGTAATCTAGAGGTTCCCAATGACCAAGCATTTTTACATGTATCAC 900
consensus_2320#1 ATGCTACAGTACTGGGTAATCTAGAGGTTCCCAATGACCAAGCATTTTTACATGTATCAC 441
************************************************************
consensus_2320#0 AGTCAGCGTTCTAATTAGCGGGCTATAGCGGTTTTGCCGAGCAACAGCTAGGAGAAGTCA 960
consensus_2320#1 AGTCAGCGTTCTAATTAGCGGGCTATAGCGGTTTTGCCGAGCAACAGCTAGGAGAAGTCA 501
************************************************************
consensus_2320#0 ATTTTGCAGCTAAGCTTCGCGGGCCGCTATTAGCTGTATTTAGCCCGACATAGCCGCTAA 1020
consensus_2320#1 ATTTTGCAGCTAAGCTTCGCGGGCCGCTATTAGCTGTATTTAGCCCGACATAGCCGCTAA 561
************************************************************
consensus_2320#0 ACGGGCTGAATGAGCGGTCGCT 1042
consensus_2320#1 ACGGGCTGAATGAGCGGTCGCT 583
**********************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||