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Oryza sativa
cluster # 233 cluster # 233       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_233#0 length = 1865 sequences # 2  

consensusID : consensus_233#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1865
fasta sequence
                              [GAGAAGAGAGGAGACGTCACGGACGGAAGAGTCGAGTAGTAGTAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGATGTCCATGTCCTTACTATCGGTTGGTAGGTAAGCCGAGGCACACGCGGTCATCTCTCCACACACGCGCCCCCTCGCTTCCCCCACATGTATATATACCCCTCTCTCTCTCCCAACACTGACTCCACCTCACCACTCGATCGATCGCAAGAACACGATAAGGATTCAGGGATCGATCGATTCATCTCTCCTCGTCGTTGGTCACAGGACGGAGAGAGATCACCATCAGCAGCTAGCAGCAGGATGACGAGGAAGAAGGAGAGGTCAGGGTGGGGGAGCCTGTTCAGGGGATGCCTGAGCGGAGGAGGCGCGGCGGGGAGCCGGAAGGTGCGACCGGGGCCGAGGACGGCGGCGGCGGCGGCGGCGAAGCACGGCGGAGGAGCATCATCGGCGGCGGCGCAGCGGCTGTCGTTCACGGACGTGATGAGCACGGCGTCGGAGCAGGAGCTGTCGGTGTCGCTGGTGGGGTCGAACCTGCACGTGTTCACGGTGGGGGAGCTGAAGGCGGCGACGCAGGGGTTCCTCGACGGCAACTTCCTCGGCGAGGGCGGCTTCGGCCCCGTCTACAAGGGCAACGTCGCCGACAAGGCCAAGCCGGGCCTCAAGGCCCAGCCCATCGCCGTCAAGCTCTGGGACCCCGAGGGCGCCCAGGGTCACAAAGAATGGCTGTCGGAGGTGATCTTCCTTGGGCAGCTCAGGCACCCCAACCTGGTGAAGCTCATCGGCTACTGCTGCGAGGACGAGCACCGCCTGCTCGTCTACGAGTACATGGCCAAGGGCAGCCTCGAGAACCACCTCTTCAAGAAGTTTCCTTCGATGCTGTCGTGGTCAACCCGGTTGAACATCGCGGTTGGCGCCGCCAAGGGCCTCGTCTTCCTTCACGACGCCGAGAAGCCCGTCATCTACCGCGACTTCAAGACCTCCAACATCCTACTCGACCCGGAGTACAAGGCGAAGCTGTCGGACTTTGGGCTGGCCAAAGATGGGCCGGAGGGCGACGACACCCACGTCTCCACACGCGTCATGGGCACCCACGGCTACGCCGCACCGGAGTACATCCTCACCGGTCACCTTACAGCAAAGAGCGACGTATACAGCTTTGGTGTCGTTCTGCTAGAGATCCTATCCGGGCGACGGGCTGTGGACAAGACACGACCTAGCAGGGAGCAGCATCTAGTCGAACACATGCGCTCCTGGCTCAAGGATCCACAGAAGTTAAGCCGAGTCATGGACCCGGCCCTGGAGGGCCAGTACTTCGCTACCGCGGCTCATAAGGCGGCCCTGGTGGCGTATAAGTGCCTGAGCGGTAACCCCAAAAATAGACCGGACATGTGTCAAGTCGTGAAAGACCTAGAGCCCCTCCTCAATGTCACCGATGATGTCTCTGATGAGTCGGTGGCACCCATAGCCCCGGTAAGGGAGGATAATGCTGTGAGAAAGGAAAGAACAGCAAGGAGAAGGCCCGGTGAGAGGGATGGTGGAAAACTTAGGCAAAGTAAAATGCGTTCACCCCAGAAGGTCGTTAGGAGACGTCCAGGCCAAAGCGAGGAGTTTTGGGTGTGGCATATGCCTGGAGAAGTAAAATGCTAAATATCAAGTGTAATATATATATATCCGTAACCCGCAATGTAATGTTTTTGTGTAGTGACTGATGATGAGGATGTAAAATGTAGATGGTGGTGCAGCCGGTGGTCACTGGCCAGGAAGGATTGCACCCCCTGTAATTCCTTGTTTCTTTTCTCTTGGTTTGAAATTTATTGGTCTTGGCCTCTTTTACTCAAATTAAAAAG]

[+] EMBL AK068330             [GAGAAGAGAGGAGACGTCACGGACGGAAGAGTCGAGTAGTAGTAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGATGTCCATGTCCTTACTATCGGTTGGTAGGTAAGCCGAGGCACACGCGGTCATCTCTCCACACACGCGCCCCCTCGCTTCCCCCACATGTATATATACCCCTCTCTCTCTCCCAACACTGACTCCACCTCACCACTCGATCGATCGCAAGAACACGATAAGGATTCAGGGATCGATCGATTCATCTCTCCTCGTCGTTGGTCACAGGACGGAGAGAGATCACCATCAGCAGCTAGCAGCAGGATGACGAGGAAGAAGGAGAGGTCAGGGTGGGGGAGCCTGTTCAGGGGATGCCTGAGCGGAGGAGGCGCGGCGGGGAGCCGGAAGGTGCGACCGGGGCCGAGGACGGCGGCGGCGGCGGCGGCGAAGCACGGCGGAGGAGCATCATCGGCGGCGGCGCAGCGGCTGTCGTTCACGGACGTGATGAGCACGGCGTCGGAGCAGGAGCTGTCGGTGTCGCTGGTGGGGTCGAACCTGCACGTGTTCACGGTGGGGGAGCTGAAGGCGGCGACGCAGGGGTTCCTCGACGGCAACTTCCTCGGCGAGGGCGGCTTCGGCCCCGTCTACAAGGGCAACGTCGCCGACAAGGCCAAGCCGGGCCTCAAGGCCCAGCCCATCGCCGTCAAGCTCTGGGACCCCGAGGGCGCCCAGGGTCACAAAGAATGGCTGTCGGAGGTGATCTTCCTTGGGCAGCTCAGGCACCCCAACCTGGTGAAGCTCATCGGCTACTGCTGCGAGGACGAGCACCGCCTGCTCGTCTACGAGTACATGGCCAAGGGCAGCCTCGAGAACCACCTCTTCAAGAAGTTTCCTTCGATGCTGTCGTGGTCAACCCGGTTGAACATCGCGGTTGGCGCCGCCAAGGGCCTCGTCTTCCTTCACGACGCCGAGAAGCCCGTCATCTACCGCGACTTCAAGACCTCCAACATCCTACTCGACCCGGAGTACAAGGCGAAGCTGTCGGACTTTGGGCTGGCCAAAGATGGGCCGGAGGGCGACGACACCCACGTCTCCACACGCGTCATGGGCACCCACGGCTACGCCGCACCGGAGTACATCCTCACCGGTCACCTTACAGCAAAGAGCGACGTATACAGCTTTGGTGTCGTTCTGCTAGAGATCCTATCCGGGCGACGGGCTGTGGACAAGACACGACCTAGCAGGGAGCAGCATCTAGTCGAACACATGCGCTCCTGGCTCAAGGATCCACAGAAGTTAAGCCGAGTCATGGACCCGGCCCTGGAGGGCCAGTACTTCGCTACCGCGGCTCATAAGGCGGCCCTGGTGGCGTATAAGTGCCTGAGCGGTAACCCCAAAAATAGACCGGACATGTGTCAAGTCGTGAAAGACCTAGAGCCCCTCCTCAATGTCACCGATGATGTCTCTGATGAGTCGGTGGCACCCATAGCCCCGGTAAGGGAGGATAATGCTGTGAGAAAGGAAAGAACAGCAAGGAGAAGGCCCGGTGAGAGGGATGGTGGAAAACTTAGGCAAAGTAAAATGCGTTCACCCCAGAAGGTCGTTAGGAGACGTCCAGGCCAAAGCGAGGAGTTTTGGGTGTGGCATATGCCTGGAGAAGTAAAATGCTAAATATCAAGTGTAATATATATATATCCGTAACCCGCAATGTAATGTTTTTGTGTAGTGACTGATGATGAGGATGTAAAATGTAGATGGTGGTGCAGCCGGTGGTCACTGGCCAGGAAGGATTGCACCCCCTGTAATTCCTTGTTTCTTTTCTCTTGGTTTGAAATTTATTGGTCTTGGCCT                    ]
[-] EMBL CB655206             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCGTTCTGCTAGAGATCCTATCCGGGCGACGGGCTGTGGACAAGACACGACCTAGCAGGGAGCAGCATCTAGTCGAACACATGCGCTCCTGGCTCAAGGATCCACAGAAGTTAAGCCGAGTCATGGACCCGGCCCTGGAGGGCCAGTACTTCGCTACCGCGGCTCATAAGGCGGCCCTGGTGGCGTATAAGTGCCTGAGCGGTAACCCCAAAAATAGACCGGACATGTGTCAAGTCGTGAAAGACCTAGAGCCCCTCCTCAATGTCACCGATGATGTCTCTGATGAGTCGGTGGCACCCATAGCCCCGGTAAGGGAGGATAATGCTGTGAGAAAGGAAAGAACAGCAAGGAGAAGGCCCGGTGAGAGGGATGGTGGAAAACTTAGGCAAAGTAAAATGCGTTCACCCCAGAAGGTCGTTAGGAGACGTCCAGGCCAAAGCGAGGAGTTTTGGGTGTGGCATATGCCTGGAGAAGTAAAATGCTAAATATCAAGTGTAATATATATATATCCGTAACCCGCAATGTAATGTTTTTGTGTAGTGACTGATGATGAGGATGTAAAATGTAGATGGTGGTGCAGCCGGTGGTCACTGGCCAGGAAGGATTGCACCCCCTGTAATTCCTTGTTTCTTTTCTCTTGGAAGGAAATTTATTGGTCTTGGCCTCTTTTACTCAAATTAAAAAG]


>consensus_233#0 GAGAAGAGAGGAGACGTCACGGACGGAAGAGTCGAGTAGTAGTAGGAGGAGGAGGAAGAA GAAGAAGAAGAAGAAGATGTCCATGTCCTTACTATCGGTTGGTAGGTAAGCCGAGGCACA CGCGGTCATCTCTCCACACACGCGCCCCCTCGCTTCCCCCACATGTATATATACCCCTCT CTCTCTCCCAACACTGACTCCACCTCACCACTCGATCGATCGCAAGAACACGATAAGGAT TCAGGGATCGATCGATTCATCTCTCCTCGTCGTTGGTCACAGGACGGAGAGAGATCACCA TCAGCAGCTAGCAGCAGGATGACGAGGAAGAAGGAGAGGTCAGGGTGGGGGAGCCTGTTC AGGGGATGCCTGAGCGGAGGAGGCGCGGCGGGGAGCCGGAAGGTGCGACCGGGGCCGAGG ACGGCGGCGGCGGCGGCGGCGAAGCACGGCGGAGGAGCATCATCGGCGGCGGCGCAGCGG CTGTCGTTCACGGACGTGATGAGCACGGCGTCGGAGCAGGAGCTGTCGGTGTCGCTGGTG GGGTCGAACCTGCACGTGTTCACGGTGGGGGAGCTGAAGGCGGCGACGCAGGGGTTCCTC GACGGCAACTTCCTCGGCGAGGGCGGCTTCGGCCCCGTCTACAAGGGCAACGTCGCCGAC AAGGCCAAGCCGGGCCTCAAGGCCCAGCCCATCGCCGTCAAGCTCTGGGACCCCGAGGGC GCCCAGGGTCACAAAGAATGGCTGTCGGAGGTGATCTTCCTTGGGCAGCTCAGGCACCCC AACCTGGTGAAGCTCATCGGCTACTGCTGCGAGGACGAGCACCGCCTGCTCGTCTACGAG TACATGGCCAAGGGCAGCCTCGAGAACCACCTCTTCAAGAAGTTTCCTTCGATGCTGTCG TGGTCAACCCGGTTGAACATCGCGGTTGGCGCCGCCAAGGGCCTCGTCTTCCTTCACGAC GCCGAGAAGCCCGTCATCTACCGCGACTTCAAGACCTCCAACATCCTACTCGACCCGGAG TACAAGGCGAAGCTGTCGGACTTTGGGCTGGCCAAAGATGGGCCGGAGGGCGACGACACC CACGTCTCCACACGCGTCATGGGCACCCACGGCTACGCCGCACCGGAGTACATCCTCACC GGTCACCTTACAGCAAAGAGCGACGTATACAGCTTTGGTGTCGTTCTGCTAGAGATCCTA TCCGGGCGACGGGCTGTGGACAAGACACGACCTAGCAGGGAGCAGCATCTAGTCGAACAC ATGCGCTCCTGGCTCAAGGATCCACAGAAGTTAAGCCGAGTCATGGACCCGGCCCTGGAG GGCCAGTACTTCGCTACCGCGGCTCATAAGGCGGCCCTGGTGGCGTATAAGTGCCTGAGC GGTAACCCCAAAAATAGACCGGACATGTGTCAAGTCGTGAAAGACCTAGAGCCCCTCCTC AATGTCACCGATGATGTCTCTGATGAGTCGGTGGCACCCATAGCCCCGGTAAGGGAGGAT AATGCTGTGAGAAAGGAAAGAACAGCAAGGAGAAGGCCCGGTGAGAGGGATGGTGGAAAA CTTAGGCAAAGTAAAATGCGTTCACCCCAGAAGGTCGTTAGGAGACGTCCAGGCCAAAGC GAGGAGTTTTGGGTGTGGCATATGCCTGGAGAAGTAAAATGCTAAATATCAAGTGTAATA TATATATATCCGTAACCCGCAATGTAATGTTTTTGTGTAGTGACTGATGATGAGGATGTA AAATGTAGATGGTGGTGCAGCCGGTGGTCACTGGCCAGGAAGGATTGCACCCCCTGTAAT TCCTTGTTTCTTTTCTCTTGGTTTGAAATTTATTGGTCTTGGCCTCTTTTACTCAAATTA AAAAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)