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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 876 fasta sequence
[CACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGCCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGAGAGAGAGATGGCGTTGTGTGGCAGTGTGGGATGGATGGATAAGATAAAGGATGTCGTGTGGATGGCGCTGTGGGTGGTCAAAAAAGCCGGCTTGGTTTTTTTCAAAGGTGTCAGTTCCGTTGAAAAACCGACACCTATACTATAGGTGTCAATTTTTTTAATAGAACCGATACCTATATTTGTATTACAGGTGTCAGTTCTGTTGGCAACTTTTTGTAACAAGTTGACAAGCACGATCGCAGCACCTTAAGCTTT]
[+] EMBL AK067826 [CACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGCCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGAGAGAGAGATGGCGTTGTGTGGCAGTGTGGGATGGATGGATAAGATAAAGGATGTCGTGTGGATGGCGCTGTGGGTGGTCAAAAAAGCCGGCTTGGTTTTTTTCAAAGGTGTCAGTTCCGTTGAAAAACCGACACCTATACTATAGGTGTCAATTTTTTTAATAGAACCGATACCTATATTTGTATTACAGGTGTCAGTTCTGTTGGCAACTTTTTGTAACAAGTTGACAAGCACGATCGCAGCACCTTAAGCTTT]
consensusID : consensus_2332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence
[GATCCGGTATTTATAGTTGAGGGATCACTAGTACAGAAAACCCTATAGGTGCCGGTTAGGAACTGGCTCCATTGGTCGGCACCTTTGCCTCATTTTTATTGCTGCCGGTTCTAAAACCGGTACCTATACTATTAAAAAAATAAAAAATTGATGGCGCCTACAGTGCCACCGGCCTTCTCCACCGCCGCCACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGGCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAGGGAAGCGGGGCGAGGTCCCTCGGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGA]
[-] EMBL AK064606 [GATCCGGTATTTATAGTTGAGGGATCACTAGTACAGAAAACCCTATAGGTGCCGGTTAGGAACTGGCTCCATTGGTCGGCACCTTTGCCTCATTTTTATTGCTGCCGGTTCTAAAACCGGTACCTATACTATTAAAAAAATAAAAAATTGATGGCGCCTACAGTGCCACCGGCCTTCTCCACCGCCGCCACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGGCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAGGGAAGCGGGGCGAGGTCCCTCGGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2332#0 ------------------------------------------------------------
consensus_2332#1 GATCCGGTATTTATAGTTGAGGGATCACTAGTACAGAAAACCCTATAGGTGCCGGTTAGG 60
consensus_2332#0 ------------------------------------------------------------
consensus_2332#1 AACTGGCTCCATTGGTCGGCACCTTTGCCTCATTTTTATTGCTGCCGGTTCTAAAACCGG 120
consensus_2332#0 ------------------------------------------------------------
consensus_2332#1 TACCTATACTATTAAAAAAATAAAAAATTGATGGCGCCTACAGTGCCACCGGCCTTCTCC 180
consensus_2332#0 --------CACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCC 52
consensus_2332#1 ACCGCCGCCACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCC 240
****************************************************
consensus_2332#0 TCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGG 112
consensus_2332#1 TCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGG 300
************************************************************
consensus_2332#0 GTGTCGGTGAGATCCAGCAACCGCGCCGCAACCTCGCCGTGTCGGTCGCCACACCACGTC 172
consensus_2332#1 GTGTCGGTGAGATCCAGCAACCGCGGCGCAACCTCGCCGTGTCGGTCGCCACACCACGTC 360
************************* **********************************
consensus_2332#0 GTGCTAGAGGAGGAGAA-----------------------------AGGTGGCCGCTGTC 203
consensus_2332#1 GTGCTAGAGGAGGAGAAGGGAAGCGGGGCGAGGTCCCTCGGGAGAAAGGTGGCCGCTGTC 420
***************** **************
consensus_2332#0 ACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAG 263
consensus_2332#1 ACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAG 480
************************************************************
consensus_2332#0 GAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTT 323
consensus_2332#1 GAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTT 540
************************************************************
consensus_2332#0 TGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCA 383
consensus_2332#1 TGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCA 600
************************************************************
consensus_2332#0 CCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAAC 443
consensus_2332#1 CCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAAC 660
************************************************************
consensus_2332#0 CGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTC 503
consensus_2332#1 CGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTC 720
************************************************************
consensus_2332#0 GGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTA 563
consensus_2332#1 GGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTA 780
************************************************************
consensus_2332#0 GCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGAGA 623
consensus_2332#1 GCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGA-- 838
**********************************************************
consensus_2332#0 GAGAGATGGCGTTGTGTGGCAGTGTGGGATGGATGGATAAGATAAAGGATGTCGTGTGGA 683
consensus_2332#1 ------------------------------------------------------------
consensus_2332#0 TGGCGCTGTGGGTGGTCAAAAAAGCCGGCTTGGTTTTTTTCAAAGGTGTCAGTTCCGTTG 743
consensus_2332#1 ------------------------------------------------------------
consensus_2332#0 AAAAACCGACACCTATACTATAGGTGTCAATTTTTTTAATAGAACCGATACCTATATTTG 803
consensus_2332#1 ------------------------------------------------------------
consensus_2332#0 TATTACAGGTGTCAGTTCTGTTGGCAACTTTTTGTAACAAGTTGACAAGCACGATCGCAG 863
consensus_2332#1 ------------------------------------------------------------
consensus_2332#0 CACCTTAAGCTTT 876
consensus_2332#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||