These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence [CGCCGTTGGATCCCGCTCACGCCTCGTCTCGCTCGACGTCTCCGAGGAGGCGAGGAGCTCGAGCTCGCCGCCTCGCCGGCCGGCCATTACTTTATCCGCGGCGGGTAGCTGGGGAGGGAGGGGAGGCGGCCGGCCACCAACCCATCGTCGTCTTGTGGTTTCCCATGCGGTTGCCGCCGCGGGCGCCGCTGCATTCGCGGGAGCGGGCGGGAACGGGATGGGGCTCGTCGGTGGCCTCCTCGGCTTCGGCGTCGGCCTCCCCCTCGGCATCGCCGTCGCCTACCTCGTCTACCTCCGCTTGTTCGCCCCTCGCCGCCGTCTCCAGGATCCTATTATTAGACCACTACGCGACTTGGATTCTGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGAACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGGGGCCCTTCCTTGATAAGGCAATCTGCAACACAATAAGAAGTGTACTCAGACCAACATGTGATCAATATGTTGGACGATATGGAATAAAATCAATTGAATTTGGGCACTTAACACTTGGGGCTCTTCCTCCTACGTTCCAAGGAATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCCGTGGGCCAGCATATCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCTCAGCT] [+] EMBL CB657575 [CGCCGTTGGATCCCGCTCACGCCTCGTCTCGCTCGACGTCTCCGAGGAGGCGAGGAGCTCGAGCTCGCCGCCTCGCCGGCCGGCCATTACTTTATCCGCGGCGGGTAGCTGGGGAGGGAGGGGAGGCGGCCGGCCACCAACCCATCGTCGTCTTGTGGTTTCCCATGCGGTTGCCGCCGCGGGCGCCGCTGCATTCGCGGGAGCGGGCGGGAACGGGATGGGGCTCGTCGGTGGCCTCCTCGGCTTCGGCGTCGGCCTCCCCCTCGGCATCGCCGTCGCCTACCTCGTCTACCTCCGCTTGTTCGCCCCTCGCCGCCGTCTCCAGGATCCTATTATTAGACCACTACGCGACTTGGATTCTGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGAACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGGGGCCCTTCCTTGATAAGGCAATCTGCAACACAATAAGAAGTGTACTCAGACCAACATGTGATCAATATGTTGGACGATATGGAATAAAATCAATTGAATTTGGGCACTTAACACTTGGGGCTCTTCCTCCTACGTTCCAAGGAATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCCGTGGGCCAGCATATCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCTCAGCT] consensusID : consensus_2340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [TACGCGACTTGGATTCTGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGAACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGTGGCCCTTCCTTGATAAGGAATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCGGTGGGCCAGCATAGCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCTCAGCTTTTAGATTTACATATAATGCTGACACCACGTGTGACTCTGAAGCCTCTTGTGCCAAGCTTTCCCTGCTTTGCAAACTTGTGTGTTTAACTGATGGAGAAGCCACATATGGACTT] [+] EMBL CF304573 [TACGCGACTTGGATTCTGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGAACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGTGGCCCTTCCTTGATAAGGAATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCGGTGGGCCAGCATAGCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCTCAGCTTTTAGATTTACATATAATGCTGACACCACGTGTGACTCTGAAGCCTCTTGTGCCAAGCTTTCCCTGCTTTGCAAACTTGTGTGTTTAACTGATGGAGAAGCCACATATGGACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2340#0 CGCCGTTGGATCCCGCTCACGCCTCGTCTCGCTCGACGTCTCCGAGGAGGCGAGGAGCTC 60 consensus_2340#1 ------------------------------------------------------------ consensus_2340#0 GAGCTCGCCGCCTCGCCGGCCGGCCATTACTTTATCCGCGGCGGGTAGCTGGGGAGGGAG 120 consensus_2340#1 ------------------------------------------------------------ consensus_2340#0 GGGAGGCGGCCGGCCACCAACCCATCGTCGTCTTGTGGTTTCCCATGCGGTTGCCGCCGC 180 consensus_2340#1 ------------------------------------------------------------ consensus_2340#0 GGGCGCCGCTGCATTCGCGGGAGCGGGCGGGAACGGGATGGGGCTCGTCGGTGGCCTCCT 240 consensus_2340#1 ------------------------------------------------------------ consensus_2340#0 CGGCTTCGGCGTCGGCCTCCCCCTCGGCATCGCCGTCGCCTACCTCGTCTACCTCCGCTT 300 consensus_2340#1 ------------------------------------------------------------ consensus_2340#0 GTTCGCCCCTCGCCGCCGTCTCCAGGATCCTATTATTAGACCACTACGCGACTTGGATTC 360 consensus_2340#1 --------------------------------------------TACGCGACTTGGATTC 16 **************** consensus_2340#0 TGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGA 420 consensus_2340#1 TGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGA 76 ************************************************************ consensus_2340#0 ACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGGGGCCCTTCCTTGATAAGGCAAT 480 consensus_2340#1 ACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGTGGCCCTTCCTTGATAAGGAATT 136 ************************************* ****************** * * consensus_2340#0 CTGCAACACAATAAGAAGTGTACTCAGACCAACATGTGATC-AATATGTTGGACGATATG 539 consensus_2340#1 -----AAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCGGTGGG 191 * * ** *** ** * * * ** ** ** *** ** * * consensus_2340#0 GAATAAAATCAATTGAATTTGGGCACTTAACACTTGGGGCTCTTCCTCCTACGTTCCAAG 599 consensus_2340#1 CCAGCATAGCAAATGTAATTGTGAAAGTGA-AGGTGCATTCTTTCCAAGTGTCGGCTCAG 250 * * * *** ** * *** * * * * * ** **** * * ** consensus_2340#0 GAATTAAAGTT-TATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCCGTGG 658 consensus_2340#1 CTTTTAGATTTACATATAATGCTGACACCACGTGTGACTCTGAAGCCTCTTGTGCCAAGC 310 *** * ** ** **** * * ** * * *** * * ** * consensus_2340#0 G---CCAGCATATCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCT 715 consensus_2340#1 TTTCCCTGCTTTGCAAACTTGTGTGTTTAACTGATGGAGAAG-----CCACATATGGACT 365 ** ** * **** * *** ** *** ** * * *** * * * ** consensus_2340#0 CAGCT 720 consensus_2340#1 T---- 366 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||