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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1429 fasta sequence
[CCCGCCACGTCTCCCCTCCCCGGCCATGGGAGCGGCCATGCTCCTCGCTCCCATGCCTCTCCTCCTCCTCGCCTCCACTCCCCTCGCCGCCGTCCACCTCCCCACCCGCTGCCGCCTCCGCCTGCAGCTCCTCTCCCGCGCCGCGCCCGAAGCCGCCTCCGCCACCACCACCACCACCACCGCGCCCGACAACCACTTCTCTGTCGAGGAATACCTCATCTCCAACTGCAATCTCACCCAGCCACAGGCCCACAAGGCGTCCAAGAGCATCGCCCACCTCAAGTCCCGCTCCAACCCCGACGCCGTCCTCGCCTTCCTCGCCGACTTCGGCCTCTCCCCCAAGGAGGTCGCGGCCATTGTTGCCTCCAACCCGCGCATCCTGTGCGCCCGCATCGACCGCTCCCTTGCACCCATCTGCTCGGAGCTCCGCGCCGTCGGCCTCTCCCCCTCCCAGATCGCCCGCCTCGCCCAGATCACCGGCCGCTACTTCCTCTGCCGCAGCTTCGTCTCCAAGGTGCGGTTCTGGCTCCCCCTCTTCGGCTCATCGGAGAGGCTTCTCCAGGCCAGCGACTGGAACTACTGGCTCCTCACCTCCGACCTCGAGAAGGTGGTCGAGCCCAACGTCTCCTTCCTCAAGGAATGCGGGCTAAGTGCTCGTGATATTTCCAAGCTGCTCGTGGCCGCGCCGCGGCTTGTCACCATGCACCCGGATTACGTCAAGGACGCCGTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCACGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCTGAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCGGATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCACGCGGAGTTCTTGATCGACGAGGTCGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAGGAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCAAGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGTTGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGGGAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGAACAATGGAGGTGTGTATGTGTGTGTGTCTCACTTCCATTGGATAACTTCATTCTACTGATCAACTATAGCAGGGATGGCAGATTCAATTCATGGTCATTTTAGTGTAGGTTTCTTGCAGTTGACAAGGAGGTGGATGTGTATAACAACCTTGAGAACTGTTCAGTTGTGGTTGAACAATGTTCAGT]
[+] EMBL AK065868 [CCCGCCACGTCTCCCCTCCCCGGCCATGGGAGCGGCCATGCTCCTCGCTCCCATGCCTCTCCTCCTCCTCGCCTCCACTCCCCTCGCCGCCGTCCACCTCCCCACCCGCTGCCGCCTCCGCCTGCAGCTCCTCTCCCGCGCCGCGCCCGAAGCCGCCTCCGCCACCACCACCACCACCACCGCGCCCGACAACCACTTCTCTGTCGAGGAATACCTCATCTCCAACTGCAATCTCACCCAGCCACAGGCCCACAAGGCGTCCAAGAGCATCGCCCACCTCAAGTCCCGCTCCAACCCCGACGCCGTCCTCGCCTTCCTCGCCGACTTCGGCCTCTCCCCCAAGGAGGTCGCGGCCATTGTTGCCTCCAACCCGCGCATCCTGTGCGCCCGCATCGACCGCTCCCTTGCACCCATCTGCTCGGAGCTCCGCGCCGTCGGCCTCTCCCCCTCCCAGATCGCCCGCCTCGCCCAGATCACCGGCCGCTACTTCCTCTGCCGCAGCTTCGTCTCCAAGGTGCGGTTCTGGCTCCCCCTCTTCGGCTCATCGGAGAGGCTTCTCCAGGCCAGCGACTGGAACTACTGGCTCCTCACCTCCGACCTCGAGAAGGTGGTCGAGCCCAACGTCTCCTTCCTCAAGGAATGCGGGCTAAGTGCTCGTGATATTTCCAAGCTGCTCGTGGCCGCGCCGCGGCTTGTCACCATGCACCCGGATTACGTCAAGGACGCCGTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCACGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCTGAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCGGATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCACGCGGAGTTCTTGATCGACGAGGTCGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAGGAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCAAGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGTTGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGGGAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGAACAATGGAGGTGTGTATGTGTGTGTGTCTCACTTCCATTGGATAACTTCATTCTACTGATCAACTATAGCAGGGATGGCAGATTCAATTCATGGTCATTTTAGTGTAGGTTTCTTGCAGTTGACAAGGAGGTGGATGTGTATAACAACCTTGAGAACTGTTCAGTTGTGGTTGAACAATGTTCAGT]
consensusID : consensus_2349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 947 fasta sequence
[GTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCACGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCTGAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCGGATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCAACGCGGAGTTCTTGATCGACGAGGTCGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAGGAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCAAGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGTTGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGGGAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGGACAATGGAGGCTTACACTCTAGCTGGCTTCTGGCATGATCAGCGATCACGATGTCCTGATGTGCATCTTCCAATTCCAAGTTGAACGAGAGAAAGTGAAGAACCATCTGAGCAAAGATATAACTAGATAAATTGCGGGACTAGGGAAGAACACTCTACATAAGGAGATGGAAAAGGTTGATCTGGTTCTCAGCAAATCATCAGAATGAGGAGTGTTCCTCTACGGCATAGAACAAGTTGCGGCTGAAGCTTTAGAAGAGGTTATTTTTCAAGCTGTTCAACTGGATAGGCAGAGGCTTTCCTATCGTATACTAGCATGTTTCTTGGATTGCATGCCTACTGTTGCAAAGCAAAAACTTAGGCAACCCAAGATTAGAAAAAGCACTACTCCATATACTTCATTCACCCGTTTCTAAATATTTGACACCGTT]
[+] EMBL AK064731 [GTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCACGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCTGAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCGGATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCAACGCGGAGTTCTTGATCGACGAGGTCGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAGGAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCAAGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGTTGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGGGAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGGACAATGGAGGCTTACACTCTAGCTGGCTTCTGGCATGATCAGCGATCACGATGTCCTGATGTGCATCTTCCAATTCCAAGTTGAACGAGAGAAAGTGAAGAACCATCTGAGCAAAGATATAACTAGATAAATTGCGGGACTAGGGAAGAACACTCTACATAAGGAGATGGAAAAGGTTGATCTGGTTCTCAGCAAATCATCAGAATGAGGAGTGTTCCTCTACGGCATAGAACAAGTTGCGGCTGAAGCTTTAGAAGAGGTTATTTTTCAAGCTGTTCAACTGGATAGGCAGAGGCTTTCCTATCGTATACTAGCATGTTTCTTGGATTGCATGCCTACTGTTGCAAAGCAAAAACTTAGGCAACCCAAGATTAGAAAAAGCACTACTCCATATACTTCATTCACCCGTTTCTAAATATTTGACACCGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2349#0 CCCGCCACGTCTCCCCTCCCCGGCCATGGGAGCGGCCATGCTCCTCGCTCCCATGCCTCT 60
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CCTCCTCCTCGCCTCCACTCCCCTCGCCGCCGTCCACCTCCCCACCCGCTGCCGCCTCCG 120
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CCTGCAGCTCCTCTCCCGCGCCGCGCCCGAAGCCGCCTCCGCCACCACCACCACCACCAC 180
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CGCGCCCGACAACCACTTCTCTGTCGAGGAATACCTCATCTCCAACTGCAATCTCACCCA 240
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 GCCACAGGCCCACAAGGCGTCCAAGAGCATCGCCCACCTCAAGTCCCGCTCCAACCCCGA 300
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CGCCGTCCTCGCCTTCCTCGCCGACTTCGGCCTCTCCCCCAAGGAGGTCGCGGCCATTGT 360
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 TGCCTCCAACCCGCGCATCCTGTGCGCCCGCATCGACCGCTCCCTTGCACCCATCTGCTC 420
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 GGAGCTCCGCGCCGTCGGCCTCTCCCCCTCCCAGATCGCCCGCCTCGCCCAGATCACCGG 480
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CCGCTACTTCCTCTGCCGCAGCTTCGTCTCCAAGGTGCGGTTCTGGCTCCCCCTCTTCGG 540
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CTCATCGGAGAGGCTTCTCCAGGCCAGCGACTGGAACTACTGGCTCCTCACCTCCGACCT 600
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CGAGAAGGTGGTCGAGCCCAACGTCTCCTTCCTCAAGGAATGCGGGCTAAGTGCTCGTGA 660
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 TATTTCCAAGCTGCTCGTGGCCGCGCCGCGGCTTGTCACCATGCACCCGGATTACGTCAA 720
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 GGACGCCGTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCA 780
consensus_2349#1 -------GTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCA 53
*****************************************************
consensus_2349#0 CGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCT 840
consensus_2349#1 CGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCT 113
************************************************************
consensus_2349#0 GAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCG 900
consensus_2349#1 GAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCG 173
************************************************************
consensus_2349#0 GATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCA-CGCGGAGTTCTTGATCGACGAGGT 959
consensus_2349#1 GATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCAACGCGGAGTTCTTGATCGACGAGGT 233
*********************************** ************************
consensus_2349#0 CGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAG 1019
consensus_2349#1 CGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAG 293
************************************************************
consensus_2349#0 GAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCA 1079
consensus_2349#1 GAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCA 353
************************************************************
consensus_2349#0 AGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGT 1139
consensus_2349#1 AGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGT 413
************************************************************
consensus_2349#0 TGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGG 1199
consensus_2349#1 TGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGG 473
************************************************************
consensus_2349#0 GAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGAACAATGGAGGTGTGTA 1259
consensus_2349#1 GAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGGACAATGGAGGCTTACA 533
******************************************* ********** * *
consensus_2349#0 -TGTGTGTGTGTCTCACTTCCATTGG--ATAACTTCATTCTACTGATCAACT----ATAG 1312
consensus_2349#1 CTCTAGCTGGCTTCTGGCATGATCAGCGATCACGATGTCCTGATGTGCATCTTCCAATTC 593
* * ** * ** * ** ** * ** ** ** ** **
consensus_2349#0 CAGGGATGGC-AGATTCAATTCATGGTCATTTTAGTGTAGGTTTCTTGCAGTTGACAAGG 1371
consensus_2349#1 CAAGTTGAACGAGAGAAAGTGAAGAACCATCTGAGCAAAGATATAACTAGATAAATTGCG 653
** * * *** * * * *** * ** ** * * * * *
consensus_2349#0 AGGTGGATGTGTATAACAACCTTGAGAACTGTTCAGTTGTGGTTGAAC-AATGTTCAGT- 1429
consensus_2349#1 GGACTA--GGGAAGAACACTCTACATAAGGAGATGGAAAAGGTTGATCTGGTTCTCAGCA 711
* * * * **** ** * ** * ****** * * ****
consensus_2349#0 ------------------------------------------------------------
consensus_2349#1 AATCATCAGAATGAGGAGTGTTCCTCTACGGCATAGAACAAGTTGCGGCTGAAGCTTTAG 771
consensus_2349#0 ------------------------------------------------------------
consensus_2349#1 AAGAGGTTATTTTTCAAGCTGTTCAACTGGATAGGCAGAGGCTTTCCTATCGTATACTAG 831
consensus_2349#0 ------------------------------------------------------------
consensus_2349#1 CATGTTTCTTGGATTGCATGCCTACTGTTGCAAAGCAAAAACTTAGGCAACCCAAGATTA 891
consensus_2349#0 --------------------------------------------------------
consensus_2349#1 GAAAAAGCACTACTCCATATACTTCATTCACCCGTTTCTAAATATTTGACACCGTT 947
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||