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Oryza sativa
cluster # 2359 cluster # 2359       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2359#0 length = 1920 sequences # 2  

consensusID : consensus_2359#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1920
fasta sequence
                              [CCCGAAAACAGAGGAAGAAGAAGTATACTCCTCCACTAGGAGGGGTTCACAGAATCTCCAGCCGCAAAGGATACTTCCAACTCCGCCGCCCATTCAAAATCTCCGCCACCTCCCAATCCAAACCCCTCCTCCTCGACGATTCCAAAACCATCGATCCGCTCGCCCCGCCGCGCCGCCGACCATCGCCATCGCCATTGCCATCTCGCCAGATTCACCTCCTTTCCTTGCCGCCTCCGGGAGGGACTCCAAGAAACCGCGAGAAGAAAGCCATGGTGCAGAGGAAGCAAGCGCGCAAGAAGCCCAAAGATTCTCAACTTGGTTCCAACGACGGGTTGCCGGCGGATCACGCGCGCGGTGGCGCCATTGTGCGGACGGCGCTCCCGAACTACATGAGGGCGACGAGCAGCTCGGACGCGAGGGGTGGAGGGCGGGAGGCGGCGGCGGCCACCGGCGCGCCGCCGCGGAGGGAGCGGGGCGCGGCGAGAGGGAAGGCGATGGTGCTCGCCGACGGGGGTGGTCCGTTCGTGAGCAGGGCGACGTGCTCCTCCGCCATGAGGGGGCTCGGGCGCGGGCTCGGGCTCCGCGGCGGGGCGGCGCACGCCTGCCCGTACTCCTACTGCTCGTTCAAATGCCACGCCGCCGACGCGGACGTGGTTCCCCTCAGAACCCTCGTGGCATCGCGGAGGCGGCTGATCAAGACGCAGCAGAGCATGAAGCTCAAGGGCGCGTCCCCGTTCCGCAAGCCCAGCAACGGCGGCGGCGCCGCCGATGGCTTCTTCGTCGAGATATACTCCGGCGCCGCCGCCGCAGCCGCACCGACGGTGAGCTCGGGCGCGAGCTGCAGTGATCTCTCCACGGAAGACAATGACGCCGCGGTCAGGGAGGGGGAGTATGCCGTGTTCGATCATCGGAGTCGCGGGGATGACGAGGACAAGGCGCGGGATTCGGATGGTTCAGTGGACGGTTCTTGCGGATCCAGTGATGTGATCTCGGGTGGTTCGGTCGATTTGTTCGTGACGAAATCTCGCGGCGGCAAACAAGAAATCGATGGAGGGAAGGGGATTTACCTGGATCAAGAAGCAGAGGACTTTGATGCCTGCAAGTCAGACATTTCAGAGGAGCTGGATGCAAAATATGAAGATGGTGGTGTCGATGCTTCAAATGGATCTTCAATTGATGACATATCCTCCGCATTCGGTGGAATGAACTTCAAAGATGCATGTCCTGATCCCACTGGTGCAGCAAGCAGTCAGAGAAAAAGGTGGAACATTGCTAAGAGGACAACATCTGAGCAGGGGGAGAAAATGCGCCTCTTTAATCCCAGGGCTCCCAATTTCCTCCCGGTGGAGCCTGATCCAGAGGCTGAAAAGGTTGATCTCAGGCATCAGATGATGGGTGATCGGAAGAATGCCGAGGAATGGATGGTTGATTATGCGCTTAGGAGGGCAGTGAACAAATTAGCCCGCGCTCAGAAGAGGAAAGTTGAGATGCTTGTCCAGGCCTTTGAAACTGTTCAACAGGATGATGATAAGAAAAGCATCACACTTACAAAGTCTTCGCAACCATGCAGATGACTACTCTTAGAGGCCTTGCACTTTAGCTGGAACTAATCACCATCTCGAGGTTCTAACTCAGTGGTCACTGCAATATTAGTGCCAGAGACCTGCTCGACAAGGATAGAGCTGCTTAATATCACTGAGGTGATGAGATCTCGATCTGGTAGTTGAGCTTTATGGAGCACAATGAGTTGATTAGTGTAGTACATTAGGGCATGTACATTTAAGTCTCGTGTGCTCTTGTCGATATATTAGTAGTGATCAATAATAGTAAGTGTACGAGACTTGCGAAGTGGCAAGAGTGTTGGGATGTATTCCTTGGGCAAAGATCAATAAAACTCTTATTGGCAAAAAAAAAAAAAAA]

[+] EMBL AK107123             [CCCGAAAACAGAGGAAGAAGAAGTATACTCCTCCACTAGGAGGGGTTCACAGAATCTCCAGCCGCAAAGGATACTTCCAACTCCGCCGCCCATTCAAAATCTCCGCCACCTCCCAATCCAAACCCCTCCTCCTCGACGATTCCAAAACCATCGATCCGCTCGCCCCGCCGCGCCGCCGACCATCGCCATCGCCATTGCCATCTCGCCAGATTCACCTCCTTTCCTTGCCGCCTCCGGGAGGGACTCCAAGAAACCGCGAGAAGAAAGCCATGGTGCAGAGGAAGCAAGCGCGCAAGAAGCCCAAAGATTCTCAACTTGGTTCCAACGACGGGTTGCCGGCGGATCACGCGCGCGGTGGCGCCATTGTGCGGACGGCGCTCCCGAACTACATGAGGGCGACGAGCAGCTCGGACGCGAGGGGTGGAGGGCGGGAGGCGGCGGCGGCCACCGGCGCGCCGCCGCGGAGGGAGCGGGGCGCGGCGAGAGGGAAGGCGATGGTGCTCGCCGACGGGGGTGGTCCGTTCGTGAGCAGGGCGACGTGCTCCTCCGCCATGAGGGGGCTCGGGCGCGGGCTCGGGCTCCGCGGCGGGGCGGCGCACGCCTGCCCGTACTCCTACTGCTCGTTCAAATGCCACGCCGCCGACGCGGACGTGGTTCCCCTCAGAACCCTCGTGGCATCGCGGAGGCGGCTGATCAAGACGCAGCAGAGCATGAAGCTCAAGGGCGCGTCCCCGTTCCGCAAGCCCAGCAACGGCGGCGGCGCCGCCGATGGCTTCTTCGTCGAGATATACTCCGGCGCCGCCGCCGCAGCCGCACCGACGGTGAGCTCGGGCGCGAGCTGCAGTGATCTCTCCACGGAAGACAATGACGCCGCGGTCAGGGAGGGGGAGTATGCCGTGTTCGATCATCGGAGTCGCGGGGATGACGAGGACAAGGCGCGGGATTCGGATGGTTCAGTGGACGGTTCTTGCGGATCCAGTGATGTGATCTCGGGTGGTTCGGTCGATTTGTTCGTGACGAAATCTCGCGGCGGCAAACAAGAAATCGATGGAGGGAAGGGGATTTACCTGGATCAAGAAGCAGAGGACTTTGATGCCTGCAAGTCAGACATTTCAGAGGAGCTGGATGCAAAATATGAAGATGGTGGTGTCGATGCTTCAAATGGATCTTCAATTGATGACATATCCTCCGCATTCGGTGGAATGAACTTCAAAGATGCATGTCCTGATCCCACTGGTGCAGCAAGCAGTCAGAGAAAAAGGTGGAACATTGCTAAGAGGACAACATCTGAGCAGGGGGAGAAAATGCGCCTCTTTAATCCCAGGGCTCCCAATTTCCTCCCGGTGGAGCCTGATCCAGAGGCTGAAAAGGTTGATCTCAGGCATCAGATGATGGGTGATCGGAAGAATGCCGAGGAATGGATGGTTGATTATGCGCTTAGGAGGGCAGTGAACAAATTAGCCCGCGCTCAGAAGAGGAAAGTTGAGATGCTTGTCCAGGCCTTTGAAACTGTTCAACAGGATGATGATAAGAAAAGCATCACACTTACAAAGTCTTCGCAACCATGCAGATGACTACTCTTAGAGGCCTTGCACTTTAGCTGGAACTAATCACCATCTCGAGGTTCTAACTCAGTGGTCACTGCAATATTAGTGCCAGAGACCTGCTCGACAAGGATAGAGCTGCTTAATATCACTGAGGTGATGAGATCTCGATCTGGTAGTTGAGCTTTATGGAGCACAATGAGTTGATTAGTGTAGTACATTAGGGCATGTACATTTAAGTCTCGTGTGCTCTTGTCGATATATTAGTAGTGATCAATAATAGTAAGTGTACGAGACTTGCGAAGTGGCAAGAGTGTTGGGATGTATTCCTTGGGCAAAGATCAATAAAACTCTTAT                   ]
[-] EMBL CA762181             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  aCGAGACAAGGGGGGTTGATTATGCGCTTAGGAGGGCAGTGAACAAATTAGCCCGCGCTCAGAAGAGGAAAGTTGAGATGCTTGTCCAGGCCTTTGAAACTGTTCAACAGGATGATGATAAGAAAAGCATCACACTTACAAAGTCTTCGCAACCATGCAGATGACTGCTTTTAGAGGCCTTGCACCTTAGCTGGAACTAATCACCATCTCGAGGTTCTAACTCAGTGGTCACTGCAATATTAGTGCCAGAGACCTGCTCGACAAGGATAGAGCTGCTTAATATCACTGAGGTGATGAGATCTCGATCTGGTAGTTGAGCTTTATGGAGCACAATAAGTTGATTAGTGTAGTACATTAGGGCATGTACATTTAAGTCTCGTGTGCTCTTGTCGATATATTAGTAGTGATCAATAATAGTAAGTGTACGAGACT       TGGCAAGAGTGTTGGGATGTATTCCTTGGGCAAAGATCAATAAAACTCTTATTGGCAAAAAAAAAAAAAAA]


>consensus_2359#0 CCCGAAAACAGAGGAAGAAGAAGTATACTCCTCCACTAGGAGGGGTTCACAGAATCTCCA GCCGCAAAGGATACTTCCAACTCCGCCGCCCATTCAAAATCTCCGCCACCTCCCAATCCA AACCCCTCCTCCTCGACGATTCCAAAACCATCGATCCGCTCGCCCCGCCGCGCCGCCGAC CATCGCCATCGCCATTGCCATCTCGCCAGATTCACCTCCTTTCCTTGCCGCCTCCGGGAG GGACTCCAAGAAACCGCGAGAAGAAAGCCATGGTGCAGAGGAAGCAAGCGCGCAAGAAGC CCAAAGATTCTCAACTTGGTTCCAACGACGGGTTGCCGGCGGATCACGCGCGCGGTGGCG CCATTGTGCGGACGGCGCTCCCGAACTACATGAGGGCGACGAGCAGCTCGGACGCGAGGG GTGGAGGGCGGGAGGCGGCGGCGGCCACCGGCGCGCCGCCGCGGAGGGAGCGGGGCGCGG CGAGAGGGAAGGCGATGGTGCTCGCCGACGGGGGTGGTCCGTTCGTGAGCAGGGCGACGT GCTCCTCCGCCATGAGGGGGCTCGGGCGCGGGCTCGGGCTCCGCGGCGGGGCGGCGCACG CCTGCCCGTACTCCTACTGCTCGTTCAAATGCCACGCCGCCGACGCGGACGTGGTTCCCC TCAGAACCCTCGTGGCATCGCGGAGGCGGCTGATCAAGACGCAGCAGAGCATGAAGCTCA AGGGCGCGTCCCCGTTCCGCAAGCCCAGCAACGGCGGCGGCGCCGCCGATGGCTTCTTCG TCGAGATATACTCCGGCGCCGCCGCCGCAGCCGCACCGACGGTGAGCTCGGGCGCGAGCT GCAGTGATCTCTCCACGGAAGACAATGACGCCGCGGTCAGGGAGGGGGAGTATGCCGTGT TCGATCATCGGAGTCGCGGGGATGACGAGGACAAGGCGCGGGATTCGGATGGTTCAGTGG ACGGTTCTTGCGGATCCAGTGATGTGATCTCGGGTGGTTCGGTCGATTTGTTCGTGACGA AATCTCGCGGCGGCAAACAAGAAATCGATGGAGGGAAGGGGATTTACCTGGATCAAGAAG CAGAGGACTTTGATGCCTGCAAGTCAGACATTTCAGAGGAGCTGGATGCAAAATATGAAG ATGGTGGTGTCGATGCTTCAAATGGATCTTCAATTGATGACATATCCTCCGCATTCGGTG GAATGAACTTCAAAGATGCATGTCCTGATCCCACTGGTGCAGCAAGCAGTCAGAGAAAAA GGTGGAACATTGCTAAGAGGACAACATCTGAGCAGGGGGAGAAAATGCGCCTCTTTAATC CCAGGGCTCCCAATTTCCTCCCGGTGGAGCCTGATCCAGAGGCTGAAAAGGTTGATCTCA GGCATCAGATGATGGGTGATCGGAAGAATGCCGAGGAATGGATGGTTGATTATGCGCTTA GGAGGGCAGTGAACAAATTAGCCCGCGCTCAGAAGAGGAAAGTTGAGATGCTTGTCCAGG CCTTTGAAACTGTTCAACAGGATGATGATAAGAAAAGCATCACACTTACAAAGTCTTCGC AACCATGCAGATGACTACTCTTAGAGGCCTTGCACTTTAGCTGGAACTAATCACCATCTC GAGGTTCTAACTCAGTGGTCACTGCAATATTAGTGCCAGAGACCTGCTCGACAAGGATAG AGCTGCTTAATATCACTGAGGTGATGAGATCTCGATCTGGTAGTTGAGCTTTATGGAGCA CAATGAGTTGATTAGTGTAGTACATTAGGGCATGTACATTTAAGTCTCGTGTGCTCTTGT CGATATATTAGTAGTGATCAATAATAGTAAGTGTACGAGACTTGCGAAGTGGCAAGAGTG TTGGGATGTATTCCTTGGGCAAAGATCAATAAAACTCTTATTGGCAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)