These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [TAGAGACAGCAACTCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTAATTTCGACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTTAGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTTCAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGACTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGGGTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCACCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCGATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATAGTATATATGTTGTAATGTGTGTGTGCAATATATATATATATATATATATATATATACATATATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGCCGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGATGATATATAATAATAATAATAATAATGAATAAATATGTAT] [+] EMBL AK107738 [TAGAGACAGCAACTCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTAATTTCGACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTTAGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTTCAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGACTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGGGTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCACCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCGATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATAGTATATATGTTGTAATGTGTGTGTGCAATATATATATATATATATATATATATATACATATATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGCCGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGATGATATATAATAATAATAATAATAATGAATAAATATGTAT] consensusID : consensus_2363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [TCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTAATTTCAACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTTAGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTTCAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGACTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGGGTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCACCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCGATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATAGTATATATATATATATATATATACATATATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGCCGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGATGATATATAATAATAATAATAATAATGAA] [-] EMBL CB659600 [TCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTAATTTCAACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTTAGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTTCAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGACTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGGGTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCACCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCGATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATAGTATATATATATATATATATATACATATATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGCCGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGATGATATATAATAATAATAATAATAATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2363#0 TAGAGACAGCAACTCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTA 60 consensus_2363#1 -------------TCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTA 47 *********************************************** consensus_2363#0 ATTTCGACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTT 120 consensus_2363#1 ATTTCAACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTT 107 ***** ****************************************************** consensus_2363#0 AGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTT 180 consensus_2363#1 AGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTT 167 ************************************************************ consensus_2363#0 CAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGA 240 consensus_2363#1 CAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGA 227 ************************************************************ consensus_2363#0 CTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGG 300 consensus_2363#1 CTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGG 287 ************************************************************ consensus_2363#0 GTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCA 360 consensus_2363#1 GTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCA 347 ************************************************************ consensus_2363#0 CCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCG 420 consensus_2363#1 CCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCG 407 ************************************************************ consensus_2363#0 ATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATA 480 consensus_2363#1 ATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATA 467 ************************************************************ consensus_2363#0 GTATATATGTTGTAATGTGTGTGTGCAATATATATATATATATATATATATATATACATA 540 consensus_2363#1 GTATATAT---------------------------------ATATATATATATATACATA 494 ******** ******************* consensus_2363#0 TATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGC 600 consensus_2363#1 TATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGC 554 ************************************************************ consensus_2363#0 CGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGAT 660 consensus_2363#1 CGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGAT 614 ************************************************************ consensus_2363#0 GATATATAATAATAATAATAATAATGAATAAATATGTAT 699 consensus_2363#1 GATATATAATAATAATAATAATAATGAA----------- 642 **************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||