These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [ACAACCGCTCTACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGAATTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGATCATGATCAAGAAATGTTGGGTTTAGTATCCGGAAGAACCACGCAAATACTAGGGCGGATGGGAGTCTTTGCTCCAAATATTTCCTGTGCAGCAATGAAGGGCAGCCGGTGGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAACAAGATCTGATTGCAAGGCTCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAGTGCAGAAGGTTGAGCTCGATCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGTTAAGGTCCCAGCGCCGTTTGACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAGAAGGTATTACAGCAGCTGATATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAAATGTGCATCTTCTGAAGAGAGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGAAATTGCTTGAGTATTTGAAGAACAAACAAACAGAAAATCCTTCAT] [+] EMBL CB659904 [ACAACCGCTCTACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGAATTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGATCATGATCAAGAAATGTTGGGTTTAGTATCCGGAAGAACCACGCAAATACTAGGGCGGATGGGAGTCTTTGCTCCAAATATTTCCTGTGCAGCAATGAAGGGCAGCCGGTGGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAACAAGATCTGATTGCAAGGCTCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAGTGCAGAAGGTTGAGCTCGATCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGTTAAGGTCCCAGCGCCGTTTGACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAGAAGGTATTACAGCAGCTGATATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAAATGTGCATCTTCTGAAGAGAGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGAAATTGCTTGAGTATTTGAAGAACAAACAAACAGAAAATCCTTCAT] consensusID : consensus_2366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [GGAGGAGCGGAAGTGAACAACCGCGCCACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGATTTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGTAATGACCTTTGGTTTGGCTTGATTTTGATGTCCTCTTGATATTGCTCATTGTTCATTTGAGGTATAGCAGTAGAATGATTTTGCTTGCAGCAATTATGTACTTTCTCCGTTTCATATTGT] [+] EMBL AK109243 [GGAGGAGCGGAAGTGAACAACCGCGCCACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGATTTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGTAATGACCTTTGGTTTGGCTTGATTTTGATGTCCTCTTGATATTGCTCATTGTTCATTTGAGGTATAGCAGTAGAATGATTTTGCTTGCAGCAATTATGTACTTTCTCCGTTTCATATTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2366#0 ----------------ACAACCGCTCTACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAG 44 consensus_2366#1 GGAGGAGCGGAAGTGAACAACCGCGCCACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAG 60 ******** * ********************************* consensus_2366#0 GAATTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACC 104 consensus_2366#1 GATTTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACC 120 ** ********************************************************* consensus_2366#0 GCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGG 164 consensus_2366#1 GCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGG 180 ************************************************************ consensus_2366#0 CCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCG 224 consensus_2366#1 CCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCG 240 ************************************************************ consensus_2366#0 CCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCC 284 consensus_2366#1 CCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCC 300 ************************************************************ consensus_2366#0 CCCGCGGTGACTCCTCAGCTTGGGGATCATGATCAAGAAATGTTGGGTTTAGTATCCGGA 344 consensus_2366#1 CCCGCGGTGACTCCTCAGCTTGGGG-TAATGACCTTTG---GTTTGGCTTGAT-TTTGAT 355 ************************* * **** * *** ** ** * * * consensus_2366#0 AGAACCACGCAAATACT-AGGGCGGATGGGAGTCTTTGCTCCAAAT--ATTTCCTGTGCA 401 consensus_2366#1 GTCCTCTTGATATTGCTCATTGTTCATTTGAGGTATAGCAGTAGAATGATTTTGCTTGCA 415 * * * * ** * * ** *** * ** * * **** **** consensus_2366#0 GCAATGAAGGGCAGCCGGTGGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAA 461 consensus_2366#1 GCAATTATGTACTTTCTCCGTTTCATATTGT----------------------------- 446 ***** * * * * * * * consensus_2366#0 CAAGATCTGATTGCAAGGCTCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAG 521 consensus_2366#1 ------------------------------------------------------------ consensus_2366#0 TGCAGAAGGTTGAGCTCGATCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGT 581 consensus_2366#1 ------------------------------------------------------------ consensus_2366#0 TAAGGTCCCAGCGCCGTTTGACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAG 641 consensus_2366#1 ------------------------------------------------------------ consensus_2366#0 AAGGTATTACAGCAGCTGATATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAA 701 consensus_2366#1 ------------------------------------------------------------ consensus_2366#0 ATGTGCATCTTCTGAAGAGAGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGA 761 consensus_2366#1 ------------------------------------------------------------ consensus_2366#0 AATTGCTTGAGTATTTGAAGAACAAACAAACAGAAAATCCTTCAT 806 consensus_2366#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||