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Oryza sativa
cluster # 2366 cluster # 2366       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2366#0 length = 806 sequences # 1  
consensus_2366#1 length = 446 sequences # 1  

consensusID : consensus_2366#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 806
fasta sequence
                              [ACAACCGCTCTACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGAATTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGATCATGATCAAGAAATGTTGGGTTTAGTATCCGGAAGAACCACGCAAATACTAGGGCGGATGGGAGTCTTTGCTCCAAATATTTCCTGTGCAGCAATGAAGGGCAGCCGGTGGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAACAAGATCTGATTGCAAGGCTCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAGTGCAGAAGGTTGAGCTCGATCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGTTAAGGTCCCAGCGCCGTTTGACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAGAAGGTATTACAGCAGCTGATATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAAATGTGCATCTTCTGAAGAGAGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGAAATTGCTTGAGTATTTGAAGAACAAACAAACAGAAAATCCTTCAT]

[+] EMBL CB659904             [ACAACCGCTCTACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGAATTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGATCATGATCAAGAAATGTTGGGTTTAGTATCCGGAAGAACCACGCAAATACTAGGGCGGATGGGAGTCTTTGCTCCAAATATTTCCTGTGCAGCAATGAAGGGCAGCCGGTGGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAACAAGATCTGATTGCAAGGCTCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAGTGCAGAAGGTTGAGCTCGATCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGTTAAGGTCCCAGCGCCGTTTGACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAGAAGGTATTACAGCAGCTGATATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAAATGTGCATCTTCTGAAGAGAGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGAAATTGCTTGAGTATTTGAAGAACAAACAAACAGAAAATCCTTCAT]


>consensus_2366#0 ACAACCGCTCTACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGAATTCCCTCTCCGCC CGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGG CGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCC CTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGT CGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTC AGCTTGGGGATCATGATCAAGAAATGTTGGGTTTAGTATCCGGAAGAACCACGCAAATAC TAGGGCGGATGGGAGTCTTTGCTCCAAATATTTCCTGTGCAGCAATGAAGGGCAGCCGGT GGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAACAAGATCTGATTGCAAGGC TCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAGTGCAGAAGGTTGAGCTCGA TCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGTTAAGGTCCCAGCGCCGTTT GACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAGAAGGTATTACAGCAGCTGA TATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAAATGTGCATCTTCTGAAGAG AGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGAAATTGCTTGAGTATTTGAA GAACAAACAAACAGAAAATCCTTCAT



consensusID : consensus_2366#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence
                              [GGAGGAGCGGAAGTGAACAACCGCGCCACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGATTTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGTAATGACCTTTGGTTTGGCTTGATTTTGATGTCCTCTTGATATTGCTCATTGTTCATTTGAGGTATAGCAGTAGAATGATTTTGCTTGCAGCAATTATGTACTTTCTCCGTTTCATATTGT]

[+] EMBL AK109243             [GGAGGAGCGGAAGTGAACAACCGCGCCACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGATTTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGTAATGACCTTTGGTTTGGCTTGATTTTGATGTCCTCTTGATATTGCTCATTGTTCATTTGAGGTATAGCAGTAGAATGATTTTGCTTGCAGCAATTATGTACTTTCTCCGTTTCATATTGT]


>consensus_2366#1 GGAGGAGCGGAAGTGAACAACCGCGCCACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAG GATTTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACC GCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGG CCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCG CCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCC CCCGCGGTGACTCCTCAGCTTGGGGTAATGACCTTTGGTTTGGCTTGATTTTGATGTCCT CTTGATATTGCTCATTGTTCATTTGAGGTATAGCAGTAGAATGATTTTGCTTGCAGCAAT TATGTACTTTCTCCGTTTCATATTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2366#0      ----------------ACAACCGCTCTACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAG 44
consensus_2366#1      GGAGGAGCGGAAGTGAACAACCGCGCCACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAG 60
                                      ******** * *********************************

consensus_2366#0      GAATTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACC 104
consensus_2366#1      GATTTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACC 120
                      ** *********************************************************

consensus_2366#0      GCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGG 164
consensus_2366#1      GCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGG 180
                      ************************************************************

consensus_2366#0      CCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCG 224
consensus_2366#1      CCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCG 240
                      ************************************************************

consensus_2366#0      CCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCC 284
consensus_2366#1      CCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCC 300
                      ************************************************************

consensus_2366#0      CCCGCGGTGACTCCTCAGCTTGGGGATCATGATCAAGAAATGTTGGGTTTAGTATCCGGA 344
consensus_2366#1      CCCGCGGTGACTCCTCAGCTTGGGG-TAATGACCTTTG---GTTTGGCTTGAT-TTTGAT 355
                      ************************* * **** *       *** ** **  * *  *  

consensus_2366#0      AGAACCACGCAAATACT-AGGGCGGATGGGAGTCTTTGCTCCAAAT--ATTTCCTGTGCA 401
consensus_2366#1      GTCCTCTTGATATTGCTCATTGTTCATTTGAGGTATAGCAGTAGAATGATTTTGCTTGCA 415
                           *  *  * * ** *  *   **  ***   * **   * *   ****    ****

consensus_2366#0      GCAATGAAGGGCAGCCGGTGGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAA 461
consensus_2366#1      GCAATTATGTACTTTCTCCGTTTCATATTGT----------------------------- 446
                      ***** * *  *   *   *      * *                               

consensus_2366#0      CAAGATCTGATTGCAAGGCTCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAG 521
consensus_2366#1      ------------------------------------------------------------
                                                                                  

consensus_2366#0      TGCAGAAGGTTGAGCTCGATCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGT 581
consensus_2366#1      ------------------------------------------------------------
                                                                                  

consensus_2366#0      TAAGGTCCCAGCGCCGTTTGACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAG 641
consensus_2366#1      ------------------------------------------------------------
                                                                                  

consensus_2366#0      AAGGTATTACAGCAGCTGATATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAA 701
consensus_2366#1      ------------------------------------------------------------
                                                                                  

consensus_2366#0      ATGTGCATCTTCTGAAGAGAGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGA 761
consensus_2366#1      ------------------------------------------------------------
                                                                                  

consensus_2366#0      AATTGCTTGAGTATTTGAAGAACAAACAAACAGAAAATCCTTCAT 806
consensus_2366#1      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)