These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1413 fasta sequence [TTAGAGGTGAAGTTTGAAGAAGAGAAAGCTCGTTCTGTTCAGACTGTTAAGGAATCAATGGAGGCACAGCTATGCTCATCAAACACCGAAGTACTAAAACTGCGTGACATTGTTAAAGCACTAGAAAATGAGGTAGAAAAGGAGAAGGCACTGCATGAAGATCTTTCAGCACAGTTGGAGGCGAAGATCGAAGCAGAGAGAACTTTTTCTGTGGAGGCTATTAAAGAATCATTTCAGTCAGAACTCCAGTCAGTGAACTCAGAAGTTGTGGAGCTGCGCGGTATGGTGACTGCACTTGAGCATGAGGTGGTAAAGGAGAAAACATTTTCTGCAGAGCTCCAAATGCAGCTAGAAGCTCTGGAGGCAATAAAAAGGGTGTTGGAGTCTGAGATTGAGTCTGCACATCAGGATAACAGAAAGCTCAATGATAAGGTGAAGTCTTTTGAAGCAAAACTGAAAAAACAGGTGTCTTCAGCGGTGGACTTCACAGCCAAGGAAGAAGCCATGCAGTCAGAGAGAAGGGCCATGAAGCAACAACTTGAAGCAGCAAAGATGGAAGTTGGAAAGCTGACAAACAAGGTGAGCTTGCTCCAAGGGGAGGTGTTACAGGAGAGATTGTTATCAGAAGAGTTCGAACAAGAATACCACAAGCTGGAGGCTCGGCTGTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGTCTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAGAAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATTGACCGACATCGACAATACGATTGTGGAGCCTGAGAGACTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAATAGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTCAACAGCAGCTGCTTTTCGCCGTTACCGTCGATCCAGCCCTCTTCGCCACCTTCAGAAATGTCAGTATTTGCAGGGGGCCTGTCTTCACTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAAAGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGTAGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTCCAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTGGCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACTGCAGAAGTGCAGATACATTGTGGTGTATTTGTGTTGTGCGGCTTATACTTGCTGTGTGAATTGTGATCTCCATATTACCAATCATACTTATTC] [+] EMBL AK060289 [TTAGAGGTGAAGTTTGAAGAAGAGAAAGCTCGTTCTGTTCAGACTGTTAAGGAATCAATGGAGGCACAGCTATGCTCATCAAACACCGAAGTACTAAAACTGCGTGACATTGTTAAAGCACTAGAAAATGAGGTAGAAAAGGAGAAGGCACTGCATGAAGATCTTTCAGCACAGTTGGAGGCGAAGATCGAAGCAGAGAGAACTTTTTCTGTGGAGGCTATTAAAGAATCATTTCAGTCAGAACTCCAGTCAGTGAACTCAGAAGTTGTGGAGCTGCGCGGTATGGTGACTGCACTTGAGCATGAGGTGGTAAAGGAGAAAACATTTTCTGCAGAGCTCCAAATGCAGCTAGAAGCTCTGGAGGCAATAAAAAGGGTGTTGGAGTCTGAGATTGAGTCTGCACATCAGGATAACAGAAAGCTCAATGATAAGGTGAAGTCTTTTGAAGCAAAACTGAAAAAACAGGTGTCTTCAGCGGTGGACTTCACAGCCAAGGAAGAAGCCATGCAGTCAGAGAGAAGGGCCATGAAGCAACAACTTGAAGCAGCAAAGATGGAAGTTGGAAAGCTGACAAACAAGGTGAGCTTGCTCCAAGGGGAGGTGTTACAGGAGAGATTGTTATCAGAAGAGTTCGAACAAGAATACCACAAGCTGGAGGCTCGGCTGTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGTCTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAGAAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATTGACCGACATCGACAATACGATTGTGGAGCCTGAGAGACTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAATAGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTCAACAGCAGCTGCTTTTCGCCGTTACCGTCGATCCAGCCCTCTTCGCCACCTTCAGAAATGTCAGTATTTGCAGGGGGCCTGTCTTCACTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAAAGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGTAGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTCCAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTGGCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACTGCAGAAGTGCAGATACATTGTGGTGTATTTGTGTTGTGCGGCTTATACTTGCTGTGTGAATTGTGATCTCCATATTACCAATCATACTTATTC] consensusID : consensus_2372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [GTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGTCTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAGAAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATAGACCGACATCGACAATACGATTGTGGAGCCTGAGAGGCTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAATAGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTCAACAGCAGCTGCTTTTTGCCGTTACCGTCGATCCAGCCCTTTTCGCCACCTTCAGAAATGTCAGTATTTGCAGGGGGCCTGTCTTCGCTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAAAGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGTAGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTCCAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTGGCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACTGCAGAAGTGCAGATACATTGTGGTGTAAAAAAAAAAAA] [-] EMBL CA762209 [GTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGTCTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAGAAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATAGACCGACATCGACAATACGATTGTGGAGCCTGAGAGGCTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAATAGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTCAACAGCAGCTGCTTTTTGCCGTTACCGTCGATCCAGCCCTTTTCGCCACCTTCAGAAATGTCAGTATTTGCAGGGGGCCTGTCTTCGCTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAAAGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGTAGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTCCAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTGGCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACTGCAGAAGTGCAGATACATTGTGGTGTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2372#0 TTAGAGGTGAAGTTTGAAGAAGAGAAAGCTCGTTCTGTTCAGACTGTTAAGGAATCAATG 60 consensus_2372#1 ------------------------------------------------------------ consensus_2372#0 GAGGCACAGCTATGCTCATCAAACACCGAAGTACTAAAACTGCGTGACATTGTTAAAGCA 120 consensus_2372#1 ------------------------------------------------------------ consensus_2372#0 CTAGAAAATGAGGTAGAAAAGGAGAAGGCACTGCATGAAGATCTTTCAGCACAGTTGGAG 180 consensus_2372#1 ------------------------------------------------------------ consensus_2372#0 GCGAAGATCGAAGCAGAGAGAACTTTTTCTGTGGAGGCTATTAAAGAATCATTTCAGTCA 240 consensus_2372#1 ------------------------------------------------------------ consensus_2372#0 GAACTCCAGTCAGTGAACTCAGAAGTTGTGGAGCTGCGCGGTATGGTGACTGCACTTGAG 300 consensus_2372#1 ------------------------------------------------------------ consensus_2372#0 CATGAGGTGGTAAAGGAGAAAACATTTTCTGCAGAGCTCCAAATGCAGCTAGAAGCTCTG 360 consensus_2372#1 ------------------------------------------------------------ consensus_2372#0 GAGGCAATAAAAAGGGTGTTGGAGTCTGAGATTGAGTCTGCACATCAGGATAACAGAAAG 420 consensus_2372#1 ------------------------------------------------------------ consensus_2372#0 CTCAATGATAAGGTGAAGTCTTTTGAAGCAAAACTGAAAAAACAGGTGTCTTCAGCGGTG 480 consensus_2372#1 ------------------------------------------------------------ consensus_2372#0 GACTTCACAGCCAAGGAAGAAGCCATGCAGTCAGAGAGAAGGGCCATGAAGCAACAACTT 540 consensus_2372#1 ------------------------------------------------------------ consensus_2372#0 GAAGCAGCAAAGATGGAAGTTGGAAAGCTGACAAACAAGGTGAGCTTGCTCCAAGGGGAG 600 consensus_2372#1 ------------------------------------------------------------ consensus_2372#0 GTGTTACAGGAGAGATTGTTATCAGAAGAGTTCGAACAAGAATACCACAAGCTGGAGGCT 660 consensus_2372#1 ------------------------------------------------------------ consensus_2372#0 CGGCTGTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGT 720 consensus_2372#1 -----GTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGT 55 ******************************************************* consensus_2372#0 CTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAG 780 consensus_2372#1 CTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAG 115 ************************************************************ consensus_2372#0 AAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATTGACCGACATCGACAATACGATT 840 consensus_2372#1 AAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATAGACCGACATCGACAATACGATT 175 ************************************* ********************** consensus_2372#0 GTGGAGCCTGAGAGACTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAAT 900 consensus_2372#1 GTGGAGCCTGAGAGGCTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAAT 235 ************** ********************************************* consensus_2372#0 AGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTC 960 consensus_2372#1 AGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTC 295 ************************************************************ consensus_2372#0 AACAGCAGCTGCTTTTCGCCGTTACCGTCGATCCAGCCCTCTTCGCCACCTTCAGAAATG 1020 consensus_2372#1 AACAGCAGCTGCTTTTTGCCGTTACCGTCGATCCAGCCCTTTTCGCCACCTTCAGAAATG 355 **************** *********************** ******************* consensus_2372#0 TCAGTATTTGCAGGGGGCCTGTCTTCACTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAA 1080 consensus_2372#1 TCAGTATTTGCAGGGGGCCTGTCTTCGCTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAA 415 ************************** ********************************* consensus_2372#0 AGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGT 1140 consensus_2372#1 AGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGT 475 ************************************************************ consensus_2372#0 AGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTC 1200 consensus_2372#1 AGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTC 535 ************************************************************ consensus_2372#0 CAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTG 1260 consensus_2372#1 CAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTG 595 ************************************************************ consensus_2372#0 GCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACT 1320 consensus_2372#1 GCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACT 655 ************************************************************ consensus_2372#0 GCAGAAGTGCAGATACATTGTGGTGTATTTGTGTTGTGCGGCTTATACTTGCTGTGTGAA 1380 consensus_2372#1 GCAGAAGTGCAGATACATTGTGGTGTAAAAAAAAAAAA---------------------- 693 *************************** consensus_2372#0 TTGTGATCTCCATATTACCAATCATACTTATTC 1413 consensus_2372#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||