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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence
[GGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGTTTCAAACAATATTAGCCTACCAAATGAGGGTACTAGCCCTAGAGGAACAGATAATGCTGAATGTTCTGAGACATCTTCAGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTAATGCTGAGGCTGCATCTCTTGACCTTTCTTCAAATGATTACTGTAATGAAGCCTTTAGTGGGGAACCATTGGCATCTTCAGATTTCCAGCACAGACCTCCTATGCAAATTGTTATGCTCATTGTTGGTACTAGAGGAGATGTGCAGCCTTTTATAGCTATAGGAAAACGATTGCAGATCTATGGCCATCGTGTTAGACTGGCAACTCATGCCAACTTCAAGGATTTTGTTGTGACGGCTGGCCTGGAGTTTTATCCCCTAGGCGGAGACCCAAAACTTCTTGCAGGATACATGGTGAAGAATAAAGGGTTCTTGCCTGCAACTCCATCAGAAATCCCTATCCAGCGGAAGGAGATTAAAGAGATTATATTCTCCTTGCTTCCTGCTTGCAAAGATCCCGA]
[+] EMBL CB661273 [GGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGTTTCAAACAATATTAGCCTACCAAATGAGGGTACTAGCCCTAGAGGAACAGATAATGCTGAATGTTCTGAGACATCTTCAGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTAATGCTGAGGCTGCATCTCTTGACCTTTCTTCAAATGATTACTGTAATGAAGCCTTTAGTGGGGAACCATTGGCATCTTCAGATTTCCAGCACAGACCTCCTATGCAAATTGTTATGCTCATTGTTGGTACTAGAGGAGATGTGCAGCCTTTTATAGCTATAGGAAAACGATTGCAGATCTATGGCCATCGTGTTAGACTGGCAACTCATGCCAACTTCAAGGATTTTGTTGTGACGGCTGGCCTGGAGTTTTATCCCCTAGGCGGAGACCCAAAACTTCTTGCAGGATACATGGTGAAGAATAAAGGGTTCTTGCCTGCAACTCCATCAGAAATCCCTATCCAGCGGAAGGAGATTAAAGAGATTATATTCTCCTTGCTTCCTGCTTGCAAAGATCCCGA]
consensusID : consensus_2386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence
[CGCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTTAATGCTGAGGCTGCATCTCTTGACCTTTCCTTCAAATGATTACT]
[+] EMBL OSS1147A [CGCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTTAATGCTGAGGCTGCATCTCTTGACCTTTCCTTCAAATGATTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2386#0 --------GGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTG 52
consensus_2386#1 CGCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTG 60
****************************************************
consensus_2386#0 CTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCG 112
consensus_2386#1 CTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCG 120
************************************************************
consensus_2386#0 GCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGTTTCAAACAATATTAGCCTACCAAATG 172
consensus_2386#1 GCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCG--------------------------- 153
*********************************
consensus_2386#0 AGGGTACTAGCCCTAGAGGAACAGATAATGCTGAATGTTCTGAGACATCTTCAGACAGGT 232
consensus_2386#1 ------------------------------------------------------ACAGGT 159
******
consensus_2386#0 CGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGA 292
consensus_2386#1 CGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGA 219
************************************************************
consensus_2386#0 AGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATG 352
consensus_2386#1 AGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATG 279
************************************************************
consensus_2386#0 GAACTGTAGAAGTTGATATCCCCACT-AATGCTGAGGCTGCATCTCTTGACCTTTC-TTC 410
consensus_2386#1 GAACTGTAGAAGTTGATATCCCCACTTAATGCTGAGGCTGCATCTCTTGACCTTTCCTTC 339
************************** ***************************** ***
consensus_2386#0 AAATGATTACTGTAATGAAGCCTTTAGTGGGGAACCATTGGCATCTTCAGATTTCCAGCA 470
consensus_2386#1 AAATGATTACT------------------------------------------------- 350
***********
consensus_2386#0 CAGACCTCCTATGCAAATTGTTATGCTCATTGTTGGTACTAGAGGAGATGTGCAGCCTTT 530
consensus_2386#1 ------------------------------------------------------------
consensus_2386#0 TATAGCTATAGGAAAACGATTGCAGATCTATGGCCATCGTGTTAGACTGGCAACTCATGC 590
consensus_2386#1 ------------------------------------------------------------
consensus_2386#0 CAACTTCAAGGATTTTGTTGTGACGGCTGGCCTGGAGTTTTATCCCCTAGGCGGAGACCC 650
consensus_2386#1 ------------------------------------------------------------
consensus_2386#0 AAAACTTCTTGCAGGATACATGGTGAAGAATAAAGGGTTCTTGCCTGCAACTCCATCAGA 710
consensus_2386#1 ------------------------------------------------------------
consensus_2386#0 AATCCCTATCCAGCGGAAGGAGATTAAAGAGATTATATTCTCCTTGCTTCCTGCTTGCAA 770
consensus_2386#1 ------------------------------------------------------------
consensus_2386#0 AGATCCCGA 779
consensus_2386#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||