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Oryza sativa
cluster # 2386 cluster # 2386       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2386#0 length = 779 sequences # 1  
consensus_2386#1 length = 350 sequences # 1  

consensusID : consensus_2386#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence
                              [GGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGTTTCAAACAATATTAGCCTACCAAATGAGGGTACTAGCCCTAGAGGAACAGATAATGCTGAATGTTCTGAGACATCTTCAGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTAATGCTGAGGCTGCATCTCTTGACCTTTCTTCAAATGATTACTGTAATGAAGCCTTTAGTGGGGAACCATTGGCATCTTCAGATTTCCAGCACAGACCTCCTATGCAAATTGTTATGCTCATTGTTGGTACTAGAGGAGATGTGCAGCCTTTTATAGCTATAGGAAAACGATTGCAGATCTATGGCCATCGTGTTAGACTGGCAACTCATGCCAACTTCAAGGATTTTGTTGTGACGGCTGGCCTGGAGTTTTATCCCCTAGGCGGAGACCCAAAACTTCTTGCAGGATACATGGTGAAGAATAAAGGGTTCTTGCCTGCAACTCCATCAGAAATCCCTATCCAGCGGAAGGAGATTAAAGAGATTATATTCTCCTTGCTTCCTGCTTGCAAAGATCCCGA]

[+] EMBL CB661273             [GGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGTTTCAAACAATATTAGCCTACCAAATGAGGGTACTAGCCCTAGAGGAACAGATAATGCTGAATGTTCTGAGACATCTTCAGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTAATGCTGAGGCTGCATCTCTTGACCTTTCTTCAAATGATTACTGTAATGAAGCCTTTAGTGGGGAACCATTGGCATCTTCAGATTTCCAGCACAGACCTCCTATGCAAATTGTTATGCTCATTGTTGGTACTAGAGGAGATGTGCAGCCTTTTATAGCTATAGGAAAACGATTGCAGATCTATGGCCATCGTGTTAGACTGGCAACTCATGCCAACTTCAAGGATTTTGTTGTGACGGCTGGCCTGGAGTTTTATCCCCTAGGCGGAGACCCAAAACTTCTTGCAGGATACATGGTGAAGAATAAAGGGTTCTTGCCTGCAACTCCATCAGAAATCCCTATCCAGCGGAAGGAGATTAAAGAGATTATATTCTCCTTGCTTCCTGCTTGCAAAGATCCCGA]


>consensus_2386#0 GGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAG GGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGC GAGGGATTCGTCGGCGCCTCTTCCGTTTCAAACAATATTAGCCTACCAAATGAGGGTACT AGCCCTAGAGGAACAGATAATGCTGAATGTTCTGAGACATCTTCAGACAGGTCGAATTCG GAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCC ATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTA GAAGTTGATATCCCCACTAATGCTGAGGCTGCATCTCTTGACCTTTCTTCAAATGATTAC TGTAATGAAGCCTTTAGTGGGGAACCATTGGCATCTTCAGATTTCCAGCACAGACCTCCT ATGCAAATTGTTATGCTCATTGTTGGTACTAGAGGAGATGTGCAGCCTTTTATAGCTATA GGAAAACGATTGCAGATCTATGGCCATCGTGTTAGACTGGCAACTCATGCCAACTTCAAG GATTTTGTTGTGACGGCTGGCCTGGAGTTTTATCCCCTAGGCGGAGACCCAAAACTTCTT GCAGGATACATGGTGAAGAATAAAGGGTTCTTGCCTGCAACTCCATCAGAAATCCCTATC CAGCGGAAGGAGATTAAAGAGATTATATTCTCCTTGCTTCCTGCTTGCAAAGATCCCGA



consensusID : consensus_2386#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence
                              [CGCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTTAATGCTGAGGCTGCATCTCTTGACCTTTCCTTCAAATGATTACT]

[+] EMBL OSS1147A             [CGCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTTAATGCTGAGGCTGCATCTCTTGACCTTTCCTTCAAATGATTACT]


>consensus_2386#1 CGCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTG CTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCG GCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGACAGGTCGAATTCGGAAAGCATAAAAC CTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGC TCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCC CCACTTAATGCTGAGGCTGCATCTCTTGACCTTTCCTTCAAATGATTACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2386#0      --------GGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTG 52
consensus_2386#1      CGCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTG 60
                              ****************************************************

consensus_2386#0      CTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCG 112
consensus_2386#1      CTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCG 120
                      ************************************************************

consensus_2386#0      GCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGTTTCAAACAATATTAGCCTACCAAATG 172
consensus_2386#1      GCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCG--------------------------- 153
                      *********************************                           

consensus_2386#0      AGGGTACTAGCCCTAGAGGAACAGATAATGCTGAATGTTCTGAGACATCTTCAGACAGGT 232
consensus_2386#1      ------------------------------------------------------ACAGGT 159
                                                                            ******

consensus_2386#0      CGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGA 292
consensus_2386#1      CGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGA 219
                      ************************************************************

consensus_2386#0      AGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATG 352
consensus_2386#1      AGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATG 279
                      ************************************************************

consensus_2386#0      GAACTGTAGAAGTTGATATCCCCACT-AATGCTGAGGCTGCATCTCTTGACCTTTC-TTC 410
consensus_2386#1      GAACTGTAGAAGTTGATATCCCCACTTAATGCTGAGGCTGCATCTCTTGACCTTTCCTTC 339
                      ************************** ***************************** ***

consensus_2386#0      AAATGATTACTGTAATGAAGCCTTTAGTGGGGAACCATTGGCATCTTCAGATTTCCAGCA 470
consensus_2386#1      AAATGATTACT------------------------------------------------- 350
                      ***********                                                 

consensus_2386#0      CAGACCTCCTATGCAAATTGTTATGCTCATTGTTGGTACTAGAGGAGATGTGCAGCCTTT 530
consensus_2386#1      ------------------------------------------------------------
                                                                                  

consensus_2386#0      TATAGCTATAGGAAAACGATTGCAGATCTATGGCCATCGTGTTAGACTGGCAACTCATGC 590
consensus_2386#1      ------------------------------------------------------------
                                                                                  

consensus_2386#0      CAACTTCAAGGATTTTGTTGTGACGGCTGGCCTGGAGTTTTATCCCCTAGGCGGAGACCC 650
consensus_2386#1      ------------------------------------------------------------
                                                                                  

consensus_2386#0      AAAACTTCTTGCAGGATACATGGTGAAGAATAAAGGGTTCTTGCCTGCAACTCCATCAGA 710
consensus_2386#1      ------------------------------------------------------------
                                                                                  

consensus_2386#0      AATCCCTATCCAGCGGAAGGAGATTAAAGAGATTATATTCTCCTTGCTTCCTGCTTGCAA 770
consensus_2386#1      ------------------------------------------------------------
                                                                                  

consensus_2386#0      AGATCCCGA 779
consensus_2386#1      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)