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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1826 fasta sequence
[CTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGATCTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTGGGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCCGCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGCGCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAAAGAACGCGTCGATCGGTAAGGCGATCTCATATTGACATGGTGAATTTTGGTGGTTTTATACAGTGGAAAAGGACGTCACAATATTCTGCTCGAGCACTACTACACGTAATATTTTTTTACTAATAGTCATCTCAATGTAGGCTTTTGAAGTTAGATTTTTAGCGCAAGTAAAACAAAAAAAACTTCATTAGCACATAATTAATTAAGTATTAATAATTATAAACTTGAAAAATAGATTTATTAAATTTTTTAAAACCATTTTTATATAGATTTTATTTTGGCAAAAAACACATCATTTAATAGTTTGAAAAACATGCTAACAGAAAATAAGGAAGTTGAAGTTTGGAGTTGGAAAAGAACTGGGCCTTAGTTAGATACTCCCTCGGTCTCATTTTAAGTGTAACCATAAGCTTCTGTGTCCAACTTTGATCGTCCGTCTTATTTAAATTTTTTATAATTAATATTTTTTATTGTTATGAGATGATAAAACATGAATACATGACTTATGTTTTTAAATTTTTTCGAATAATTTTCAAATAAGACGGGTGATCAAAGTTGGGCAGGGAAAATCATGGCTGCACTTAAAATGTGACGGAGGGAGTAGAAGTTACAAAAAAAATTTAGATACACTCATAGCATGACACGTCCGTGTTAGTAAGAAAAAATTAATATGTATAGCCTTTTCATTTTTTTATGTTGTTTAAATAGTCGTAAAATGTTTTTCTTTCAAAAAAGTAGAAGATCTAAATTATTACTGCCTCGGTTCGATTTTAAGTGTAGCGGTGGGTTTCTGCATCTAACATCTCTCCATCCATCTTATTTGAATTTTTTTGTGATTAGTATTTTTATTGTTATTAGATTATAAAATATGAATAATACTTTATGTGCGACTTTTTTTTATAAACTTTTCAAATAAAGCGGATGGTCAAACGTTCCACACGGAAACACGACTACACTTAAAATATTGGATGGAGGGAGTATATGGTATATGTCTTCACAAGCATGCAAGCTTGATTTGATCCAAAAAGCTTGAATATGTCTTCACAAATATTCAAATCTGAATATGAATGGTCGGCATACTAGTGTTTAATCTGTGTCATTTTTTTCTCGAGTTGTAGATCAAATTTAGAATTGAGTTTTAATAGGATGATAAACAACTATTGTATAAGTGTTATTAAATATTTCGAGATTTTATATATTATACCTACTTGATTAATATTCCAATGGTTAGAATAAACGAGAGGATCCCTTAAATGCCAATAACCAGTTGTCCAGCTACATATCATATCATATTAAATCCTTAGATTTCGTAACCCATTACCAGCAGTGCTGTGATTAGTATAGGTATATATTTCTATTTTCACTATATTGTAAGTTATCTACTACCTCCGTCCCATTATAAGTGCACTTATGAATTTTCGTGTCCAACATTTAACTGTCCGTCTTATTTGAAAATTTTATAATTTTTTTATAGAAATTAGTCACAAATAAAGTACTATTCATATTTTATCATCTAATAACAAATAAA]
[+] EMBL AK070409 [CTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGATCTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTGGGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCCGCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGCGCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAAAGAACGCGTCGATCGGTAAGGCGATCTCATATTGACATGGTGAATTTTGGTGGTTTTATACAGTGGAAAAGGACGTCACAATATTCTGCTCGAGCACTACTACACGTAATATTTTTTTACTAATAGTCATCTCAATGTAGGCTTTTGAAGTTAGATTTTTAGCGCAAGTAAAACAAAAAAAACTTCATTAGCACATAATTAATTAAGTATTAATAATTATAAACTTGAAAAATAGATTTATTAAATTTTTTAAAACCATTTTTATATAGATTTTATTTTGGCAAAAAACACATCATTTAATAGTTTGAAAAACATGCTAACAGAAAATAAGGAAGTTGAAGTTTGGAGTTGGAAAAGAACTGGGCCTTAGTTAGATACTCCCTCGGTCTCATTTTAAGTGTAACCATAAGCTTCTGTGTCCAACTTTGATCGTCCGTCTTATTTAAATTTTTTATAATTAATATTTTTTATTGTTATGAGATGATAAAACATGAATACATGACTTATGTTTTTAAATTTTTTCGAATAATTTTCAAATAAGACGGGTGATCAAAGTTGGGCAGGGAAAATCATGGCTGCACTTAAAATGTGACGGAGGGAGTAGAAGTTACAAAAAAAATTTAGATACACTCATAGCATGACACGTCCGTGTTAGTAAGAAAAAATTAATATGTATAGCCTTTTCATTTTTTTATGTTGTTTAAATAGTCGTAAAATGTTTTTCTTTCAAAAAAGTAGAAGATCTAAATTATTACTGCCTCGGTTCGATTTTAAGTGTAGCGGTGGGTTTCTGCATCTAACATCTCTCCATCCATCTTATTTGAATTTTTTTGTGATTAGTATTTTTATTGTTATTAGATTATAAAATATGAATAATACTTTATGTGCGACTTTTTTTTATAAACTTTTCAAATAAAGCGGATGGTCAAACGTTCCACACGGAAACACGACTACACTTAAAATATTGGATGGAGGGAGTATATGGTATATGTCTTCACAAGCATGCAAGCTTGATTTGATCCAAAAAGCTTGAATATGTCTTCACAAATATTCAAATCTGAATATGAATGGTCGGCATACTAGTGTTTAATCTGTGTCATTTTTTTCTCGAGTTGTAGATCAAATTTAGAATTGAGTTTTAATAGGATGATAAACAACTATTGTATAAGTGTTATTAAATATTTCGAGATTTTATATATTATACCTACTTGATTAATATTCCAATGGTTAGAATAAACGAGAGGATCCCTTAAATGCCAATAACCAGTTGTCCAGCTACATATCATATCATATTAAATCCTTAGATTTCGTAACCCATTACCAGCAGTGCTGTGATTAGTATAGGTATATATTTCTATTTTCACTATATTGTAAGTTATCTACTACCTCCGTCCCATTATAAGTGCACTTATGAATTTTCGTGTCCAACATTTAACTGTCCGTCTTATTTGAAAATTTTATAATTTTTTTATAGAAATTAGTCACAAATAAAGTACTATTCATATTTTATCATCTAATAACAAATAAA]
consensusID : consensus_240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1453 fasta sequence
[GGCTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGATCTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTGGGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCCGCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGCGCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAAAGAACGCGTCGATCGGGTTGGAATTAAGCTACCGACGGTTGAAGTGCGGTATGAGAATCTGAACATTGAAGCAGAGTCGTATGTGGGCAGGAGGGGACTTCCCACCATTCTCAATACATATACCATCATAATGGAGGGCCTGACAAATGCTCTTTGCATTACAAAAAAGATAACACACAAAATACCAATCCTTCACAATGTGAGTGGGATTATCAAGCCTCACAGAATGACCTTGTTGTTAGGCCCTCCAGGTTCAGGAAAAACATCACTATTATTGGCCTTGGCTGGAACATCAACCTTAAAGGTATCTGGAACAATAACTTACAATGGGCATTCAATGGAGGAATTTGTGCCCCAAAGATCTGCAGCTTATGTTAGCCAACATGATGTACATATGGCTGAACTGACAGTTCGGGAGACAGTCAATTTCGCTGCAAAGTGTCAAGGGGTTGGCCATCATTATGACTTGCTAATGGAACTGTTGAGGAGAGAGAAGGAACAAAATATTAAACCAGATCCAGAAATTGATATATATTTGAAGGCAGCTACAACAGGAGAGCAGAAAGCTGAGGTGGTCACAAATCACATACTAAAGATTTTGGGATTGGATATCTGTGCCGACACAATAGTAGGGAACAATATGCTGAGAGGCATATCAGGAGGGCAAAAAAAGCGACTAACGACAGCTGAGATGATTGTTACACCAGGACGAGCACTTTTCATGGATGAGATATCAACTGGACTTGATAGCTCGACAACATTCCAGATAGTTAACACCATCCGACAAACCATTCGCATTCTTGGTGGAACAGCAGTTATTGCTTTGCTACAGCCCGCACCTGAGACATATGAATTGTTTGATGATATAATTCTACTATCAGATGGTCAAGTTGTCTACAATGGCCCTCGTGATCATGTGCTTGAGTTCTTTAAATCGGTTGGATTCAAATGCCCTGAGAGAAAATGCGTAGCTGACTTCTTGCAGGAAGTGAGTTTTACCATGGTTTGACCTTAGCATTATTTTTGGTCAAGTGCTTAACTATGACTAATTATAAGTGGCTTATTTTAGGTTACATCTAGGAAAGATCAGAAAATACTGGATAGGTAGTGATGACACATACCAATATGTTCCTGTTACGATGATTGCTGAGGC]
[+] EMBL AK108694 [GGCTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGATCTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTGGGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCCGCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGCGCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAAAGAACGCGTCGATCGGGTTGGAATTAAGCTACCGACGGTTGAAGTGCGGTATGAGAATCTGAACATTGAAGCAGAGTCGTATGTGGGCAGGAGGGGACTTCCCACCATTCTCAATACATATACCATCATAATGGAGGGCCTGACAAATGCTCTTTGCATTACAAAAAAGATAACACACAAAATACCAATCCTTCACAATGTGAGTGGGATTATCAAGCCTCACAGAATGACCTTGTTGTTAGGCCCTCCAGGTTCAGGAAAAACATCACTATTATTGGCCTTGGCTGGAACATCAACCTTAAAGGTATCTGGAACAATAACTTACAATGGGCATTCAATGGAGGAATTTGTGCCCCAAAGATCTGCAGCTTATGTTAGCCAACATGATGTACATATGGCTGAACTGACAGTTCGGGAGACAGTCAATTTCGCTGCAAAGTGTCAAGGGGTTGGCCATCATTATGACTTGCTAATGGAACTGTTGAGGAGAGAGAAGGAACAAAATATTAAACCAGATCCAGAAATTGATATATATTTGAAGGCAGCTACAACAGGAGAGCAGAAAGCTGAGGTGGTCACAAATCACATACTAAAGATTTTGGGATTGGATATCTGTGCCGACACAATAGTAGGGAACAATATGCTGAGAGGCATATCAGGAGGGCAAAAAAAGCGACTAACGACAGCTGAGATGATTGTTACACCAGGACGAGCACTTTTCATGGATGAGATATCAACTGGACTTGATAGCTCGACAACATTCCAGATAGTTAACACCATCCGACAAACCATTCGCATTCTTGGTGGAACAGCAGTTATTGCTTTGCTACAGCCCGCACCTGAGACATATGAATTGTTTGATGATATAATTCTACTATCAGATGGTCAAGTTGTCTACAATGGCCCTCGTGATCATGTGCTTGAGTTCTTTAAATCGGTTGGATTCAAATGCCCTGAGAGAAAATGCGTAGCTGACTTCTTGCAGGAAGTGAGTTTTACCATGGTTTGACCTTAGCATTATTTTTGGTCAAGTGCTTAACTATGACTAATTATAAGTGGCTTATTTTAGGTTACATCTAGGAAAGATCAGAAAATACTGGATAGGTAGTGATGACACATACCAATATGTTCCTGTTACGATGATTGCTGAGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_240#0 --CTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGAT 58
consensus_240#1 GGCTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGAT 60
**********************************************************
consensus_240#0 CTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTG 118
consensus_240#1 CTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTG 120
************************************************************
consensus_240#0 GGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCC 178
consensus_240#1 GGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCC 180
************************************************************
consensus_240#0 GCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGC 238
consensus_240#1 GCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGC 240
************************************************************
consensus_240#0 GCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAA 298
consensus_240#1 GCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAA 300
************************************************************
consensus_240#0 AGAACGCGTCGATCGGTAAGGCGATCTCATATTGACATGGTGAATTTTGGT----GGTTT 354
consensus_240#1 AGAACGCGTCGATCGGGTTGGAATTAAGCTACCGACG-GTTGAAGTGCGGTATGAGAATC 359
**************** ** * ** *** * **** * *** * *
consensus_240#0 TATACAGTGGAAAAGGACGTCACAATATTCTGCTCGAGCACTACTACACGTAATATTTTT 414
consensus_240#1 TGAACATTGAAGCAGA--GTCG---TATGTGGGCAGGAGGGGACTTCCCACCAT-TCTCA 413
* *** ** * ** *** *** * * *** * * ** * *
consensus_240#0 TTACTAATAGTCATCTCAATGTAGGCTTTTGAAGTTAGATTTTTAGCGCAAGTAAAACAA 474
consensus_240#1 ATACATATA-CCATCATAATGGAGGGCCTGACAAATGCTCTTT--------GCATTACAA 464
*** *** **** **** *** * * * *** * * ****
consensus_240#0 AAAAAACTTCATTAGCACATAATTAATTAAGTATTAATAATTATAAACTTGAAAAATAGA 534
consensus_240#1 AAAAGA------TAACACACAA-------AATACCAATCCTTCACAATGTGAG---TGGG 508
**** * ** **** ** * ** *** ** ** *** * *
consensus_240#0 TTTATTAAATTTTTTAAAACCATTTTTATAT-AGATTTTATTTTGGCAAAAAACACATCA 593
consensus_240#1 ATTATCAAGCCTCACAGAATGACCTTGTTGTTAGGCCCTCCAGGTTCAGGAAAAACATCA 568
**** ** * * ** * ** * * ** * ** *** ******
consensus_240#0 TT--TAATAGT-TTGAAAAACATGCTAACAGAAAATAAG---GAAGTTGAAGTTTGGAGT 647
consensus_240#1 CTATTATTGGCCTTGGCTGGAACATCAACCTTAAAGGTATCTGGAACAATAACTTACAAT 628
* ** * * *** * *** *** * * * ** * *
consensus_240#0 TGGAAAAGAACTGGGCCTTAGTTAGATACTCCCTCGGTCT-CATTTTAAGTGTAACCATA 706
consensus_240#1 GGGCATTCAATGGAG---GAATTTG-TGCCCCAAAGATCTGCAGCTTATGT-TAGCCAAC 683
** * ** * * * ** * * * ** * *** ** *** ** ** ***
consensus_240#0 AGCTTCTGTGTCCAACTTTGATCGTCCGTCTTATTTAAATTTTTTATAATTAATATTTTT 766
consensus_240#1 ATGATGTACATATGGCTG-AACTGACAGT----TCGGGAG-----ACAGTCAATTTCGCT 733
* * * * ** * * * ** * * * * * *** * *
consensus_240#0 TATTGTTATGAGATGATAAAACATGAATACATGACTTATGTTTTTAAATTTTTTCGAATA 826
consensus_240#1 GCAAAGTGTCAAGGGGTTGGCCATCATT--ATGACTTGC-TAATGGAACTGTTGAGGAGA 790
* * * * * *** * * ******* * * ** * ** * * *
consensus_240#0 ATTTTCAAATAAGACGGGTGATCAAAGTTGGGCAGGGAAAATCAT--GGCTGCACTTAAA 884
consensus_240#1 GAGAAGGAACAAAATATTAAACCAGATCCAGAAATTGATATATATTTGAAGGCAGCTACA 850
** ** * * ** * * * ** * ** * *** ** *
consensus_240#0 ATGTGACGG-AGGGAGTAGAAGTTA-CAAAAAAAATTTAGATACACTCATAGCATGACAC 942
consensus_240#1 ACAGGAGAGCAGAAAGCTGAGGTGGTCACAAATCACATACTAAAGATTTTGGGATTGGAT 910
* ** * ** ** ** ** ** *** * ** * * * * ** *
consensus_240#0 GTCCGTGTTAGTA----AGAAAAAATTAATATGT--ATAGCCTTTTCATTTTTTTATGTT 996
consensus_240#1 ATCTGTGCCGACACAATAGTAGGGAACAATATGCTGAGAGGCATATCAGGAGGGCAAAAA 970
** *** * ** * * ****** * ** * * *** *
consensus_240#0 GTTTAAATAGTCGTAA--AATGTTTTTCTTTCAAAAAAGTAGAAGATCTAAATTATTACT 1054
consensus_240#1 AAGCGACTAACGACAGCTGAGATGATTGTTACACCAGGACGAGCACTTTTCATGGATGAG 1030
* ** * * * ** ** ** * * * ** *
consensus_240#0 GCCTCGGTTCGATTTTAAGTGTAGCGGTGGGTTTCTGCATCTAACATCTCTCCATCCATC 1114
consensus_240#1 ATATCAACTGGACTTGATAGCTCGACAACATTCCAGATAGTTAACACCATCCGA--CAAA 1088
** * ** ** * * * * * ***** * * * **
consensus_240#0 TTATTTGAATTTTTTTGTGATTAGTATTTTTATTGTTATTAGATTATAAAATATGAATAA 1174
consensus_240#1 CCATTCGCATTCTTGGTGGAACAGCA-----GTTATTGCTTTGCTACAGCCCGCACCTGA 1143
*** * *** ** ** ** * ** ** * ** * * *
consensus_240#0 TACTTTATGTGCGACTTTTTTTTATAAACTTTTCAAATAAAGCGGATGGTCAAACGTTCC 1234
consensus_240#1 GAC---ATATGAATTGTTTGATGATATAATTCTACTAT----CAGATGGTCAAGTTGTCT 1196
** ** ** *** * *** * ** * ** * ********* **
consensus_240#0 ACACGGAAACACGACTACACTTAAAATATTGGATGGAGGGAGTATATGGTATATGTCTTC 1294
consensus_240#1 ACAATGGCCCTCGTGATCATGTGCTTGAGTTCTTTAAATCGGTTGGATTCAAATGCCCTG 1256
*** * * ** ** * * * * * ** * *** * *
consensus_240#0 ACA-AGCATGCAAGCTTGATTTGATCCAAAAAGCTTGAATATGTCTTCACAAATATTCAA 1353
consensus_240#1 AGAGAAAATGCGTAGCTGACTTCTTGCAGGAAG--TGAGT-----TTTACCA-TGGTTTG 1308
* * * **** *** ** * ** *** *** * ** ** * * *
consensus_240#0 ATCTGAATATGAATGGTCGGCATACTAGTGTTTAATCTGTGTCATTTTTTTCTCGAGTTG 1413
consensus_240#1 ACCTTAGCATTATTTTTGGTCA----AGTGCTTAA-CTATGACTAATTATAAGTGGCTT- 1362
* ** * ** * * * * ** **** **** ** ** * ** * * **
consensus_240#0 TAGATCAAATTTAGAATTGAGTTTTAATAGGATGATAAACAACTATTGTATAAGT-GTTA 1472
consensus_240#1 --------ATTTTAGGTTACATCT---AGGAAAGATCAGAAAATACTGGATAGGTAGTGA 1411
**** ** * * * * *** * ** ** ** *** ** ** *
consensus_240#0 TTAAATATTTCGAGATTTTATATATTATACCTACTTGATTAATATTCCAATGGTTAGAAT 1532
consensus_240#1 TGACACATACCAATATGTTCC-TGTTACGATGATT--GCTGAGGC--------------- 1453
* * * ** * * ** ** * *** * * * *
consensus_240#0 AAACGAGAGGATCCCTTAAATGCCAATAACCAGTTGTCCAGCTACATATCATATCATATT 1592
consensus_240#1 ------------------------------------------------------------
consensus_240#0 AAATCCTTAGATTTCGTAACCCATTACCAGCAGTGCTGTGATTAGTATAGGTATATATTT 1652
consensus_240#1 ------------------------------------------------------------
consensus_240#0 CTATTTTCACTATATTGTAAGTTATCTACTACCTCCGTCCCATTATAAGTGCACTTATGA 1712
consensus_240#1 ------------------------------------------------------------
consensus_240#0 ATTTTCGTGTCCAACATTTAACTGTCCGTCTTATTTGAAAATTTTATAATTTTTTTATAG 1772
consensus_240#1 ------------------------------------------------------------
consensus_240#0 AAATTAGTCACAAATAAAGTACTATTCATATTTTATCATCTAATAACAAATAAA 1826
consensus_240#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||