These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1285 fasta sequence [TCCATCGCGCGCGGAGGCCAAGCGCCTCCGGCGCCGCCGCCGCTTCCTCCCGGCGGTGCTGCCTCCAGGCGCCACCGACGCTTCCTCCCCACGGCGCTGCCCCAGGTGCCGCCTCTTCCTCCCCACGCTGCGCCGCCCTTCTTCGTGCCACCGCCGCCGCCTCTCCGCTTCGCAGCGCCGGCGCCGACTCCACCTCAATACGCCATCACCAGTCGCCCTAGCCCCCACGTCCACCTTCACAGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCACCTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAGCCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGCCTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAAGACAACATCATTTGAAAGGAAGACATCAAGAATTAGCCCACCATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGCTCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACAAAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGAAGATGAAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCCAGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCTTGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCCTTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAATAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGGAAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTTTTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTGGGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTGGATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCATGTATGCTTGAATTAATCTGTGAATGAATTAAAGTTAGTCACTA] [+] EMBL AK072836 [TCCATCGCGCGCGGAGGCCAAGCGCCTCCGGCGCCGCCGCCGCTTCCTCCCGGCGGTGCTGCCTCCAGGCGCCACCGACGCTTCCTCCCCACGGCGCTGCCCCAGGTGCCGCCTCTTCCTCCCCACGCTGCGCCGCCCTTCTTCGTGCCACCGCCGCCGCCTCTCCGCTTCGCAGCGCCGGCGCCGACTCCACCTCAATACGCCATCACCAGTCGCCCTAGCCCCCACGTCCACCTTCACAGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCACCTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAGCCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGCCTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAAGACAACATCATTTGAAAGGAAGACATCAAGAATTAGCCCACCATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGCTCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACAAAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGAAGATGAAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCCAGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCTTGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCCTTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAATAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGGAAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTTTTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTGGGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTGGATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCATGTATGCTTGAATTAATCTGTGAATGAATTAAAGTTAGTCACTA] consensusID : consensus_2400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1066 fasta sequence [CCCACGTCCACCTTCACAGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCACCTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAGCCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGCCTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAAGACAACATCATTTGAAAGGAAGACATCAAGAATTGACTTTGGCTGTTTGTAGAGCCCACCATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGCTCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACAAAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGAAGATGGAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCCAGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCTTGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCCTTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAATAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGGAAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTTTTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTGGGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTGGATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCATGTATGCTTGAATTAATCTGTGAATGAATT] [+] EMBL AK066701 [CCCACGTCCACCTTCACAGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCACCTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAGCCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGCCTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAAGACAACATCATTTGAAAGGAAGACATCAAGAATTGACTTTGGCTGTTTGTAGAGCCCACCATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGCTCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACAAAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGAAGATGGAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCCAGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCTTGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCCTTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAATAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGGAAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTTTTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTGGGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTGGATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCATGTATGCTTGAATTAATCTGTGAATGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2400#0 TCCATCGCGCGCGGAGGCCAAGCGCCTCCGGCGCCGCCGCCGCTTCCTCCCGGCGGTGCT 60 consensus_2400#1 ------------------------------------------------------------ consensus_2400#0 GCCTCCAGGCGCCACCGACGCTTCCTCCCCACGGCGCTGCCCCAGGTGCCGCCTCTTCCT 120 consensus_2400#1 ------------------------------------------------------------ consensus_2400#0 CCCCACGCTGCGCCGCCCTTCTTCGTGCCACCGCCGCCGCCTCTCCGCTTCGCAGCGCCG 180 consensus_2400#1 ------------------------------------------------------------ consensus_2400#0 GCGCCGACTCCACCTCAATACGCCATCACCAGTCGCCCTAGCCCCCACGTCCACCTTCAC 240 consensus_2400#1 -------------------------------------------CCCACGTCCACCTTCAC 17 ***************** consensus_2400#0 AGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCAC 300 consensus_2400#1 AGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCAC 77 ************************************************************ consensus_2400#0 CTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAG 360 consensus_2400#1 CTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAG 137 ************************************************************ consensus_2400#0 CCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGC 420 consensus_2400#1 CCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGC 197 ************************************************************ consensus_2400#0 CTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAA 480 consensus_2400#1 CTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAA 257 ************************************************************ consensus_2400#0 GACAACATCATTTGAAAGGAAGACATCAAGAATT------------------AGCCCACC 522 consensus_2400#1 GACAACATCATTTGAAAGGAAGACATCAAGAATTGACTTTGGCTGTTTGTAGAGCCCACC 317 ********************************** ******** consensus_2400#0 ATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGC 582 consensus_2400#1 ATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGC 377 ************************************************************ consensus_2400#0 TCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACA 642 consensus_2400#1 TCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACA 437 ************************************************************ consensus_2400#0 AAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGA 702 consensus_2400#1 AAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGA 497 ************************************************************ consensus_2400#0 AGATGAAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCC 762 consensus_2400#1 AGATGGAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCC 557 ***** ****************************************************** consensus_2400#0 AGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCT 822 consensus_2400#1 AGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCT 617 ************************************************************ consensus_2400#0 TGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCC 882 consensus_2400#1 TGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCC 677 ************************************************************ consensus_2400#0 TTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAA 942 consensus_2400#1 TTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAA 737 ************************************************************ consensus_2400#0 TAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGG 1002 consensus_2400#1 TAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGG 797 ************************************************************ consensus_2400#0 AAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTT 1062 consensus_2400#1 AAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTT 857 ************************************************************ consensus_2400#0 TTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTG 1122 consensus_2400#1 TTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTG 917 ************************************************************ consensus_2400#0 GGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTG 1182 consensus_2400#1 GGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTG 977 ************************************************************ consensus_2400#0 GATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCAT 1242 consensus_2400#1 GATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCAT 1037 ************************************************************ consensus_2400#0 GTATGCTTGAATTAATCTGTGAATGAATTAAAGTTAGTCACTA 1285 consensus_2400#1 GTATGCTTGAATTAATCTGTGAATGAATT-------------- 1066 ***************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||