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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence
[GAAAGAAGGAAGGTAGAAAAATAAAGGCACTCCCTCCTTCCAAAAGACTTCGCCTAGAGGCGCAGAGGGTGCTCAAGGAGCGTGTCCAGGATATTGCGGATAAGAAAGGCATCAAGCTGAGATTTTGCAGTCTCAGGGACTGTGAAAGCCACATAAAATCGTTAGACCGTCCATGTGAGAACATCAGAACTGAAATCGGATGGCCGCCAGGGGTTCCATTTGTCCATCCACATGACCTTCCAAACAAAGCAAAGCTCATGTTTCTGGAAGCCTATGAACCAGGATGGACTGCCTCCCAGCAAGATTTAGAGGAGCAGGTCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCACCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGCTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAATGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATTCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGGTCCTCTACTCAACGGAGTCATTTGTCAATGACTTCGAAGTTAGAGAGAAGTAAAAGNTAGTATCCTCATCCGCTGTGATCTANGCACTGTACCTTTTGNGGTTCTTTTTAAATGAACGGTCAATGGTGCATGGTTGCTG]
[+] EMBL CA765661 [GAAAGAAGGAAGGTAGAAAAATAAAGGCACTCCCTCCTTCCAAAAGACTTCGCCTAGAGGCGCAGAGGGTGCTCAAGGAGCGTGTCCAGGATATTGCGGATAAGAAAGGCATCAAGCTGAGATTTTGCAGTCTCAGGGACTGTGAAAGCCACATAAAATCGTTAGACCGTCCATGTGAGAACATCAGAACTGAAATCGGATGGCCGCCAGGGGTTCCATTTGTCCATCCACATGACCTTCCAAACAAAGCAAAGCTCATGTTTCTGGAAGCCTATGAACCAGGATGGACTGCCTCCCAGCAAGATTTAGAGGAGCAGGTCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCACCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGCTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAATGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATTCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGGTCCTCTACTCAACGGAGTCATTTGTCAATGACTTCGAAGTTAGAGAGAAGTAAAAGNTAGTATCCTCATCCGCTGTGATCTANGCACTGTACCTTTTGNGGTTCTTTTTAAATGAACGGTCAATGGTGCATGGTTGCTG]
consensusID : consensus_2403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[TATGAACCCGGATGGACTGCCTCCCAGCAAGATTTAGAGGNCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCNCCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAACGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGATCCTCTCTAATATGGGTCACTGAGATGTGGATCCTCTACTCAACGGAGTCATTTGTCAATGACTCGAAGTTAGAGAGAAGTAAAGTTAGTATCCTCATCCGCTGTGATCTAGGCACTGTACTTTGTGTTCTTTTTAAATGAACGGTCAATGGTGCATGTTGCTGTAAAAAAAAA]
[+] EMBL AU068498 [TATGAACCCGGATGGACTGCCTCCCAGCAAGATTTAGAGGNCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCNCCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAACGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGATCCTCTCTAATATGGGTCACTGAGATGTGGATCCTCTACTCAACGGAGTCATTTGTCAATGACTCGAAGTTAGAGAGAAGTAAAGTTAGTATCCTCATCCGCTGTGATCTAGGCACTGTACTTTGTGTTCTTTTTAAATGAACGGTCAATGGTGCATGTTGCTGTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2403#0 GAAAGAAGGAAGGTAGAAAAATAAAGGCACTCCCTCCTTCCAAAAGACTTCGCCTAGAGG 60
consensus_2403#1 ------------------------------------------------------------
consensus_2403#0 CGCAGAGGGTGCTCAAGGAGCGTGTCCAGGATATTGCGGATAAGAAAGGCATCAAGCTGA 120
consensus_2403#1 ------------------------------------------------------------
consensus_2403#0 GATTTTGCAGTCTCAGGGACTGTGAAAGCCACATAAAATCGTTAGACCGTCCATGTGAGA 180
consensus_2403#1 ------------------------------------------------------------
consensus_2403#0 ACATCAGAACTGAAATCGGATGGCCGCCAGGGGTTCCATTTGTCCATCCACATGACCTTC 240
consensus_2403#1 ------------------------------------------------------------
consensus_2403#0 CAAACAAAGCAAAGCTCATGTTTCTGGAAGCCTATGAACCAGGATGGACTGCCTCCCAGC 300
consensus_2403#1 --------------------------------TATGAACCCGGATGGACTGCCTCCCAGC 28
******** *******************
consensus_2403#0 AAGATTTAGAGGAGCAGGTCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTT 360
consensus_2403#1 AAGATTTAGAGG------NCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTT 82
************ *****************************************
consensus_2403#0 GAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCACCTACATGCTGAGGAGTGAGGAGC 420
consensus_2403#1 GAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCNCCTACATGCTGAGGAGTGAGGAGC 142
*********************************** ************************
consensus_2403#0 TAGAAATGTATTGCTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTC 480
consensus_2403#1 TAGAAATGTATTG-TGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTC 201
************* **********************************************
consensus_2403#0 TGACACCAAATGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACT 540
consensus_2403#1 TGACACCAAACGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACT 261
********** *************************************************
consensus_2403#0 GCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATTCGAGATCCTTTGACTTACTT 600
consensus_2403#1 GCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGAT-CGAGATCCTTTGACTTACTT 320
*************************************** ********************
consensus_2403#0 CCCTCTAATATGGGTCACTGAGATGTGGGTCCTCT------------------------- 635
consensus_2403#1 CCCTCTAATATGGGTCACTGAGATGTGGATCCTCTCTAATATGGGTCACTGAGATGTGGA 380
**************************** ******
consensus_2403#0 ------ACTCAACGGAGTCATTTGTCAATGACTTCGAAGTTAGAGAGAAGTAAAAGNTAG 689
consensus_2403#1 TCCTCTACTCAACGGAGTCATTTGTCAATGACT-CGAAGTTAGAGAGAAGTAAA-GTTAG 438
*************************** ******************** * ***
consensus_2403#0 TATCCTCATCCGCTGTGATCTANGCACTGTACCTTTTGNGGTTCTTTTTAAATGAACGGT 749
consensus_2403#1 TATCCTCATCCGCTGTGATCTAGGCACTGTACTTTGT---GTTCTTTTTAAATGAACGGT 495
********************** ********* ** * ********************
consensus_2403#0 CAATGGTGCATGGTTGCTG---------- 768
consensus_2403#1 CAATGGTGCATG-TTGCTGTAAAAAAAAA 523
************ ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||