Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2413 cluster # 2413       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2413#0 length = 3322 sequences # 2  

consensusID : consensus_2413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 3322
fasta sequence
                              [TTCACTTCGAGGATTTCGCGTCCGATCCGAATCCAGTCCGATCCAATCCAATCCGACCCAGCGATCGAGCCGCACGCCCCTCCTCCGCCGGTCGCCGCCGCCGCCGCAGCGATCCCTCGCCGGAGAAAGGCCTTCCGCCCTCCCTCCGGCGGGCTCCCCCTCTCTCTCTCTGCTCGGGCAGCGGGGATGTACCAGTGGCGCAAGTTCGAGTTCTTCGAGGAGAAGGCGGCCGGGCGGGGCGTGCCCGGCGAGATCGCCTCCCGCGTCAGCTGCTGCTCCGGCGGCCGCGGCCGCGTCGCCGTCGGCTGCGACGACGGCACGGTGGGGCTCCTTGACCGCGGGTTCCGCCTCTCCTACGGCTTCCAGGCCTACGCCTCCTCCGTCCTCTTCCTCCAGCAGCTCAAGCAAAGGAATGTTCTTATCACGGTTGGCGATGATGATCAGCCATCTTCACTATCGTCAGCAATCTGTCTAAAAGTTTTCGATCTTGATAAAGTACAAGAAGAAGGTTCAAGTACAACAAGTCCTTTCTGTGTTCAAATTTTGCGCATCTTCACTAAGCAATTTCCTCAGGCAAAGATTACATCTTTTGTGGTTCTAGAAGAAGCACCTCCTATACTGCTAATTGCGATTGGACTGGACAATGGTTCCATTTATTGCATCAAAGGTGACATCGCACGTGAGCGTATCACGCGATTCATGTTGCAAGTCGAGGATGGCACCAGTTTACCTATTACTGGTCTTGGTTTCCGAGTTGAGGGGCAAGCACACCAGTTATTTGCTGTAACTACTAGTTCAATAAGCTTGTTTAGCTTGCATGATCATCCACCGAGGAGGCAAACGCTTGATCAGATTGGTTGTGAGACCAATGCTGTGGCGATGAGTGACCGCATGGATCTGATTATTGGTAGACCTGAAGCTGTGTATTTCTATGAAATTGATGGTAGAGGTCCTTGCTGGGCCTTTGATGGTGAGAAAAAGTTTGTTGGATGGTTTCGGGGCTATTTACTATGCATTATTGAAGATCAGAGGAGCCGGAAGAATACTCTTAATGTATATGATCTTAAGAATCGGTTGATTGCACATAGCATGCCAGTGGGGGATGTTTCACACTTGGTCTCTGAGTGGGGATATATTATTCTGATAATGAGCGATAAAAAGATTCTTTGCATTGGAGAGAAAGATATGGAGAGTAAGCTTGATATGTTGTTTAAGAAAAATCTGTATACAGTCGCAATCAATCTTGTACAAAGTCAACAGGCCGATCCTGCTTCAACTGCTGAGGTTCTAAGGAAGTATGGTGACCATCTCTATGGAAAACAGGAATATGATGAGGCCATGTCCCAATATATCCACACCATTGGCCATCTTGAACCATCATATGTTATACAGAAGTTCCTTGATGCAAAACGCATCTACAATCTCACAAACTATTTAGAGAAGTTACATGATCGAGGGTTAGCATCCAAAGACCGCACCACCCTTCTGTTGAATTGCTATACTAAACTGAAAGATGTGGAGAAGCTTAACCATTTCATCAAAGATGAAGATGGGGTAGGTGAAATCAAGTTTGATGTGGAAACTGCCATAAGAGTATGTCGTGCAGCTGGATATCATGAGCATGCTATGTTTGTTGCCAAAAAGGCTGGGAGGCATGAGTTGTATTTGAAAATTTTACTGGAGGATCTTGGTAGATATGATGAGGCACTGCAGTATATATCTAGCCTTGAGGCGAATCAAGCAGGTCTTACTGTAAAAGAGTATGGGAAAATTCTTGTGGAGCATAGACCTGCTGAAACAGTTGAAATACTGTTGAGACTCTGTACAGATGGTGGAGATCCTATGACAAGAAGAGGTTCAAATAGCATGCATTTGCTTATGATACCTTCTCCAATGGACTTTGTAAACATATTTGTACACAGCCCGAAACATCTCATGGAATTTCTAGAGAATTATACCAAAGCAGTAAAGGACTCACCTGCTCAAACAGAAATTCATAACACCCTTCTGGAGTTATATATATCAAAAGATTTAAGTTTCCCTTCTATGTCACAAGAAAATGGCTTTGAGGAGCAGAATAGTAAGGAAAGAAAAGGTAAAGAAGTTGCAAATGGCTATAAATCTGGCCCAAGGGAGAAAGGAAATCTGGGAAAGGAAGATATGAATGTCGCAAAGGATATTGTTGATAGGCAAAGGAAAGGGCTTGCATTGCTCAAGTCTGCATGGACATCTGAGATGGATGATCCTCTGTATGATGTTGATCTTGCTCTTATCATCTGTAATGCAAATGCATTCAAAGATGGGCTATTGTTTCTGTATGAGAAACTAAAACTATTCAAAGAAGTTATTAGTTGCTACAAGCAAGCTCATGATCACGAGGGTCTAATTGCCTGCTGTAAGAAGCTAGGAGATTCATCTCAAGGTGGGGATCCATCTCTTTGGGGTGATCTGTTGAAATATTTTAGTGAGCTTGGGGAAGATTGCTCTAAAGAGGTCAAGGAGGTATTGACCTATATTGAAAAGGAGGATGTTTTGCCTCCTATTGTTGTGCTAGAGACATTGTCGAAAAACCCATGCTTGACACTGTCAGTTGTCAAGGATTACATTGCCCGCAAACTTGAGCAAGAATCAAAGCTAATCGAAGAAGATAGGAAATCTATTGACAAGTACCAGGATGAGACAGAACTGATGAAAAGGGAGATAGAAGACCTCAAGACAAACGCAAAGGTCTTTCAGCTTAGCAAGTGTACGACGTGCACCTTTACGCTTGACCTTCCTGCGGTCCACTTCATGTGCATGCACTCCTTCCACCTTCGCTGCCTTGGGGACAATGAGAAAGAATGCCCAGAATGTGCTCCCGAATATAGATCTGTCATGGAGGCAAAGCAGAAGCTAGAACATAACGCTAGAGACCATGATCTCTTCTTCAGGCAGCTGAGGGGTTCAAAGGATGGCTTCTCTGTCGTCGCAGACTATTTTAGCAAGGGCATTGTGAGTAAAACAGCCATTCCTCCTGAAAATGGCCGATAAGGAGTGGAAGAAAACCAGCTCTATTACTCCCCATGTACAGGATTTGACGATGTTTTATCTCCTTTCCCATGGTGTTTTGTCATCATGTGAGTTTCAGGGTCCATCACACAGCATGTGCAGGCCTTTAATAGCGAGTTCCTCTAGTGTACCAACTTATGTATGCTTTCTGGCCTATTTTTTGTGGCCGTGCTATGGAGTTCTGTTGTGCTTGACATTGTAAATCCTTCTGTTGGCAAACGCTGCCTAGTTTTTGGCATTTAGTTTTGATGGAAGAAGATTCACGGCCATCATG]

[+] EMBL AK103116             [TTCACTTCGAGGATTTCGCGTCCGATCCGAATCCAGTCCGATCCAATCCAATCCGACCCAGCGATCGAGCCGCACGCCCCTCCTCCGCCGGTCGCCGCCGCCGCCGCAGCGATCCCTCGCCGGAGAAAGGCCTTCCGCCCTCCCTCCGGCGGGCTCCCCCTCTCTCTCTCTGCTCGGGCAGCGGGGATGTACCAGTGGCGCAAGTTCGAGTTCTTCGAGGAGAAGGCGGCCGGGCGGGGCGTGCCCGGCGAGATCGCCTCCCGCGTCAGCTGCTGCTCCGGCGGCCGCGGCCGCGTCGCCGTCGGCTGCGACGACGGCACGGTGGGGCTCCTTGACCGCGGGTTCCGCCTCTCCTACGGCTTCCAGGCCTACGCCTCCTCCGTCCTCTTCCTCCAGCAGCTCAAGCAAAGGAATGTTCTTATCACGGTTGGCGATGATGATCAGCCATCTTCACTATCGTCAGCAATCTGTCTAAAAGTTTTCGATCTTGATAAAGTACAAGAAGAAGGTTCAAGTACAACAAGTCCTTTCTGTGTTCAAATTTTGCGCATCTTCACTAAGCAATTTCCTCAGGCAAAGATTACATCTTTTGTGGTTCTAGAAGAAGCACCTCCTATACTGCTAATTGCGATTGGACTGGACAATGGTTCCATTTATTGCATCAAAGGTGACATCGCACGTGAGCGTATCACGCGATTCATGTTGCAAGTCGAGGATGGCACCAGTTTACCTATTACTGGTCTTGGTTTCCGAGTTGAGGGGCAAGCACACCAGTTATTTGCTGTAACTACTAGTTCAATAAGCTTGTTTAGCTTGCATGATCATCCACCGAGGAGGCAAACGCTTGATCAGATTGGTTGTGAGACCAATGCTGTGGCGATGAGTGACCGCATGGATCTGATTATTGGTAGACCTGAAGCTGTGTATTTCTATGAAATTGATGGTAGAGGTCCTTGCTGGGCCTTTGATGGTGAGAAAAAGTTTGTTGGATGGTTTCGGGGCTATTTACTATGCATTATTGAAGATCAGAGGAGCCGGAAGAATACTCTTAATGTATATGATCTTAAGAATCGGTTGATTGCACATAGCATGCCAGTGGGGGATGTTTCACACTTGGTCTCTGAGTGGGGATATATTATTCTGATAATGAGCGATAAAAAGATTCTTTGCATTGGAGAGAAAGATATGGAGAGTAAGCTTGATATGTTGTTTAAGAAAAATCTGTATACAGTCGCAATCAATCTTGTACAAAGTCAACAGGCCGATCCTGCTTCAACTGCTGAGGTTCTAAGGAAGTATGGTGACCATCTCTATGGAAAACAGGAATATGATGAGGCCATGTCCCAATATATCCACACCATTGGCCATCTTGAACCATCATATGTTATACAGAAGTTCCTTGATGCAAAACGCATCTACAATCTCACAAACTATTTAGAGAAGTTACATGATCGAGGGTTAGCATCCAAAGACCGCACCACCCTTCTGTTGAATTGCTATACTAAACTGAAAGATGTGGAGAAGCTTAACCATTTCATCAAAGATGAAGATGGGGTAGGTGAAATCAAGTTTGATGTGGAAACTGCCATAAGAGTATGTCGTGCAGCTGGATATCATGAGCATGCTATGTTTGTTGCCAAAAAGGCTGGGAGGCATGAGTTGTATTTGAAAATTTTACTGGAGGATCTTGGTAGATATGATGAGGCACTGCAGTATATATCTAGCCTTGAGGCGAATCAAGCAGGTCTTACTGTAAAAGAGTATGGGAAAATTCTTGTGGAGCATAGACCTGCTGAAACAGTTGAAATACTGTTGAGACTCTGTACAGATGGTGGAGATCCTATGACAAGAAGAGGTTCAAATAGCATGCATTTGCTTATGATACCTTCTCCAATGGACTTTGTAAACATATTTGTACACAGCCCGAAACATCTCATGGAATTTCTAGAGAATTATACCAAAGCAGTAAAGGACTCACCTGCTCAAACAGAAATTCATAACACCCTTCTGGAGTTATATATATCAAAAGATTTAAGTTTCCCTTCTATGTCACAAGAAAATGGCTTTGAGGAGCAGAATAGTAAGGAAAGAAAAGGTAAAGAAGTTGCAAATGGCTATAAATCTGGCCCAAGGGAGAAAGGAAATCTGGGAAAGGAAGATATGAATGTCGCAAAGGATATTGTTGATAGGCAAAGGAAAGGGCTTGCATTGCTCAAGTCTGCATGGACATCTGAGATGGATGATCCTCTGTATGATGTTGATCTTGCTCTTATCATCTGTAATGCAAATGCATTCAAAGATGGGCTATTGTTTCTGTATGAGAAACTAAAACTATTCAAAGAAGTTATTAGTTGCTACAAGCAAGCTCATGATCACGAGGGTCTAATTGCCTGCTGTAAGAAGCTAGGAGATTCATCTCAAGGTGGGGATCCATCTCTTTGGGGTGATCTGTTGAAATATTTTAGTGAGCTTGGGGAAGATTGCTCTAAAGAGGTCAAGGAGGTATTGACCTATATTGAAAAGGAGGATGTTTTGCCTCCTATTGTTGTGCTAGAGACATTGTCGAAAAACCCATGCTTGACACTGTCAGTTGTCAAGGATTACATTGCCCGCAAACTTGAGCAAGAATCAAAGCTAATCGAAGAAGATAGGAAATCTATTGACAAGTACCAGGATGAGACAGAACTGATGAAAAGGGAGATAGAAGACCTCAAGACAAACGCAAAGGTCTTTCAGCTTAGCAAGTGTACGACGTGCACCTTTACGCTTGACCTTCCTGCGGTCCACTTCATGTGCATGCACTCCTTCCACCTTCGCTGCCTTGGGGACAATGAGAAAGAATGCCCAGAATGTGCTCCCGAATATAGATCTGTCATGGAGGCAAAGCAGAAGCTAGAACATAACGCTAGAGACCATGATCTCTTCTTCAGGCAGCTGAGGGGTTCAAAGGATGGCTTCTCTGTCGTCGCAGACTATTTTAGCAAGGGCATTGTGAGTAAAACAGCCATTCCTCCTGAAAATGGCCGATAAGGAGTGGAAGAAAACCAGCTCTATTACTCCCCATGTACAGGATTTGACGATGTTTTATCTCCTTTCCCATGGTGTTTTGTCATCATGTGAGTTTCAGGGTCCATCACACAGCATGTGCAGGCCTTTAATAGCGAGTTCCTCTAGTGTACCAACTTATGTATGCTTTCTGGCCTATTTTTTGTGGCCGTGCTATGGAGTTCTGTTGTGCTTGACATTGTAAATCCTTCTGTTGGCAAACGCTGCCTAGTTTTTGGCATTTAGTTTTGATGGAAGAAG                ]
[+] EMBL AK066976             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGGAGGATGTTTTGCCTCCTATTGTTGTGCTAGAGACATTGTCGAAAAACCCATGCTTGACACTGTCAGTTGTCAAGGATTACATTGCCCGCAAACTTGAGCAAGAATCAAAGCTAATCGAAGAAGATAGGAAATCTATTGACAAGTACCAGGATGAGACAGAACTGATGAAAAGGGAGATAGAAGACCTCAAGACAAACGCAAAGGTCTTTCAGCTTAGCAAGTGTACGACGTGCACCTTTACGCTTGACCTTCCTGCGGTCCACTTCATGTGCATGCACTCCTTCCACCTTCGCTGCCTTGGGGACAATGAGAAAGAATGCCCAGAATGTGCTCCCGAATATAGATCTGTCATGGAGGCAAAGCAGAAGCTAGAACATAACGCTAGAGACCATGATCTCTTCTTCAGGCAGCTGAGGGGTTCAAAGGATGGCTTCTCTGTCGTCGCAGACTATTTTAGCAAGGGCATTGTGAGTAAAACAGCCATTCCTCCTGAAAATGGCCGATAAGGAGTGGAAGAAAACCAGCTCTATTACTCCCCATGTACAGGATTTGACGATGTTTTATCTCCTTTCCCATGGTGTTTTGTCATCATGTGAGTTTCAGGGTCCATCACACAGCATGTGCAGGCCTTTAATAGCGAGTTCCTCTAGTGTACCAACTTATGTATGCTTTCTGGCCTATTTTTTGTGGCCGTGCTATGGAGTTCTGTTGTGCTTGACATTGTAAATCCTTCTGTTGGCAAACGCTGCCTAGTTTTTGGCATTTAGTTTTGATGGAAGAAGATTCACGGCCATCATG]


>consensus_2413#0 TTCACTTCGAGGATTTCGCGTCCGATCCGAATCCAGTCCGATCCAATCCAATCCGACCCA GCGATCGAGCCGCACGCCCCTCCTCCGCCGGTCGCCGCCGCCGCCGCAGCGATCCCTCGC CGGAGAAAGGCCTTCCGCCCTCCCTCCGGCGGGCTCCCCCTCTCTCTCTCTGCTCGGGCA GCGGGGATGTACCAGTGGCGCAAGTTCGAGTTCTTCGAGGAGAAGGCGGCCGGGCGGGGC GTGCCCGGCGAGATCGCCTCCCGCGTCAGCTGCTGCTCCGGCGGCCGCGGCCGCGTCGCC GTCGGCTGCGACGACGGCACGGTGGGGCTCCTTGACCGCGGGTTCCGCCTCTCCTACGGC TTCCAGGCCTACGCCTCCTCCGTCCTCTTCCTCCAGCAGCTCAAGCAAAGGAATGTTCTT ATCACGGTTGGCGATGATGATCAGCCATCTTCACTATCGTCAGCAATCTGTCTAAAAGTT TTCGATCTTGATAAAGTACAAGAAGAAGGTTCAAGTACAACAAGTCCTTTCTGTGTTCAA ATTTTGCGCATCTTCACTAAGCAATTTCCTCAGGCAAAGATTACATCTTTTGTGGTTCTA GAAGAAGCACCTCCTATACTGCTAATTGCGATTGGACTGGACAATGGTTCCATTTATTGC ATCAAAGGTGACATCGCACGTGAGCGTATCACGCGATTCATGTTGCAAGTCGAGGATGGC ACCAGTTTACCTATTACTGGTCTTGGTTTCCGAGTTGAGGGGCAAGCACACCAGTTATTT GCTGTAACTACTAGTTCAATAAGCTTGTTTAGCTTGCATGATCATCCACCGAGGAGGCAA ACGCTTGATCAGATTGGTTGTGAGACCAATGCTGTGGCGATGAGTGACCGCATGGATCTG ATTATTGGTAGACCTGAAGCTGTGTATTTCTATGAAATTGATGGTAGAGGTCCTTGCTGG GCCTTTGATGGTGAGAAAAAGTTTGTTGGATGGTTTCGGGGCTATTTACTATGCATTATT GAAGATCAGAGGAGCCGGAAGAATACTCTTAATGTATATGATCTTAAGAATCGGTTGATT GCACATAGCATGCCAGTGGGGGATGTTTCACACTTGGTCTCTGAGTGGGGATATATTATT CTGATAATGAGCGATAAAAAGATTCTTTGCATTGGAGAGAAAGATATGGAGAGTAAGCTT GATATGTTGTTTAAGAAAAATCTGTATACAGTCGCAATCAATCTTGTACAAAGTCAACAG GCCGATCCTGCTTCAACTGCTGAGGTTCTAAGGAAGTATGGTGACCATCTCTATGGAAAA CAGGAATATGATGAGGCCATGTCCCAATATATCCACACCATTGGCCATCTTGAACCATCA TATGTTATACAGAAGTTCCTTGATGCAAAACGCATCTACAATCTCACAAACTATTTAGAG AAGTTACATGATCGAGGGTTAGCATCCAAAGACCGCACCACCCTTCTGTTGAATTGCTAT ACTAAACTGAAAGATGTGGAGAAGCTTAACCATTTCATCAAAGATGAAGATGGGGTAGGT GAAATCAAGTTTGATGTGGAAACTGCCATAAGAGTATGTCGTGCAGCTGGATATCATGAG CATGCTATGTTTGTTGCCAAAAAGGCTGGGAGGCATGAGTTGTATTTGAAAATTTTACTG GAGGATCTTGGTAGATATGATGAGGCACTGCAGTATATATCTAGCCTTGAGGCGAATCAA GCAGGTCTTACTGTAAAAGAGTATGGGAAAATTCTTGTGGAGCATAGACCTGCTGAAACA GTTGAAATACTGTTGAGACTCTGTACAGATGGTGGAGATCCTATGACAAGAAGAGGTTCA AATAGCATGCATTTGCTTATGATACCTTCTCCAATGGACTTTGTAAACATATTTGTACAC AGCCCGAAACATCTCATGGAATTTCTAGAGAATTATACCAAAGCAGTAAAGGACTCACCT GCTCAAACAGAAATTCATAACACCCTTCTGGAGTTATATATATCAAAAGATTTAAGTTTC CCTTCTATGTCACAAGAAAATGGCTTTGAGGAGCAGAATAGTAAGGAAAGAAAAGGTAAA GAAGTTGCAAATGGCTATAAATCTGGCCCAAGGGAGAAAGGAAATCTGGGAAAGGAAGAT ATGAATGTCGCAAAGGATATTGTTGATAGGCAAAGGAAAGGGCTTGCATTGCTCAAGTCT GCATGGACATCTGAGATGGATGATCCTCTGTATGATGTTGATCTTGCTCTTATCATCTGT AATGCAAATGCATTCAAAGATGGGCTATTGTTTCTGTATGAGAAACTAAAACTATTCAAA GAAGTTATTAGTTGCTACAAGCAAGCTCATGATCACGAGGGTCTAATTGCCTGCTGTAAG AAGCTAGGAGATTCATCTCAAGGTGGGGATCCATCTCTTTGGGGTGATCTGTTGAAATAT TTTAGTGAGCTTGGGGAAGATTGCTCTAAAGAGGTCAAGGAGGTATTGACCTATATTGAA AAGGAGGATGTTTTGCCTCCTATTGTTGTGCTAGAGACATTGTCGAAAAACCCATGCTTG ACACTGTCAGTTGTCAAGGATTACATTGCCCGCAAACTTGAGCAAGAATCAAAGCTAATC GAAGAAGATAGGAAATCTATTGACAAGTACCAGGATGAGACAGAACTGATGAAAAGGGAG ATAGAAGACCTCAAGACAAACGCAAAGGTCTTTCAGCTTAGCAAGTGTACGACGTGCACC TTTACGCTTGACCTTCCTGCGGTCCACTTCATGTGCATGCACTCCTTCCACCTTCGCTGC CTTGGGGACAATGAGAAAGAATGCCCAGAATGTGCTCCCGAATATAGATCTGTCATGGAG GCAAAGCAGAAGCTAGAACATAACGCTAGAGACCATGATCTCTTCTTCAGGCAGCTGAGG GGTTCAAAGGATGGCTTCTCTGTCGTCGCAGACTATTTTAGCAAGGGCATTGTGAGTAAA ACAGCCATTCCTCCTGAAAATGGCCGATAAGGAGTGGAAGAAAACCAGCTCTATTACTCC CCATGTACAGGATTTGACGATGTTTTATCTCCTTTCCCATGGTGTTTTGTCATCATGTGA GTTTCAGGGTCCATCACACAGCATGTGCAGGCCTTTAATAGCGAGTTCCTCTAGTGTACC AACTTATGTATGCTTTCTGGCCTATTTTTTGTGGCCGTGCTATGGAGTTCTGTTGTGCTT GACATTGTAAATCCTTCTGTTGGCAAACGCTGCCTAGTTTTTGGCATTTAGTTTTGATGG AAGAAGATTCACGGCCATCATG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)