These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1169 fasta sequence [AAGCCAGATTCATGTCATCGTGTGTAGAAACTAGAAACTGGAGTACAAGTGAAGAAAACAAAACGAAAATTTTCTGATCCCCGCCTCGTCCGAAGCCCTAAACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGGTATTCCTTATTTCTTGCTCTAGTTATTGACCGGCTCCACCAATACATCAGAGAGCTACGTGGGCTAAAGAAGAATGTTGAGGCCGTAACTAAGCATAATAAAATGTTGGAGGAAGCAAAACATGGAAGATCTGAGGAGACAAAGAAATACCAAGAAGAGATTGGTGCTCTCAATGAGGATATGAAGAAACTGAAGCTACAAGTCCAAGAAAAGACAGAGGAAGTCCACGTTGCTGAGGACAAGGCTCTTGCTATTCGGAAACAATCTGAAAGCCTGCTGCTTGAGTATGACCGTTTGCTGGAGGACAACCAGCATCTCCGGGAGCAGCTGCAGTCAATTGACCACAGGCTCTCCAGTCCAAAATAAGTTCAAGTGTAATATTTTTTTTTCCTATGGGATTGGAGAACCTAGTCAATATATTGCTGCAGAAAATTTTCCATCACAGTTTTGGAAAAAAAAAGTTTACTTTTATCGTAGAATACCAAGAAATTCCTGGCGGTAAAATCATTTGGATTTAATGCTCATATAATATGCTTTTAGCAGTATTCTCCCTTATCAGTTTTATCATCTTTGCTTAATTAGCTTTTGTAATATATACCCGTAGGTAAGTTCGAGCATCATATTGTCAAGCACTTTACAATTTTTCCATGTGTGGTTATTTTAATAATGTC] [+] EMBL AK070852 [AAGCCAGATTCATGTCATCGTGTGTAGAAACTAGAAACTGGAGTACAAGTGAAGAAAACAAAACGAAAATTTTCTGATCCCCGCCTCGTCCGAAGCCCTAAACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGGTATTCCTTATTTCTTGCTCTAGTTATTGACCGGCTCCACCAATACATCAGAGAGCTACGTGGGCTAAAGAAGAATGTTGAGGCCGTAACTAAGCATAATAAAATGTTGGAGGAAGCAAAACATGGAAGATCTGAGGAGACAAAGAAATACCAAGAAGAGATTGGTGCTCTCAATGAGGATATGAAGAAACTGAAGCTACAAGTCCAAGAAAAGACAGAGGAAGTCCACGTTGCTGAGGACAAGGCTCTTGCTATTCGGAAACAATCTGAAAGCCTGCTGCTTGAGTATGACCGTTTGCTGGAGGACAACCAGCATCTCCGGGAGCAGCTGCAGTCAATTGACCACAGGCTCTCCAGTCCAAAATAAGTTCAAGTGTAATATTTTTTTTTCCTATGGGATTGGAGAACCTAGTCAATATATTGCTGCAGAAAATTTTCCATCACAGTTTTGGAAAAAAAAAGTTTACTTTTATCGTAGAATACCAAGAAATTCCTGGCGGTAAAATCATTTGGATTTAATGCTCATATAATATGCTTTTAGCAGTATTCTCCCTTATCAGTTTTATCATCTTTGCTTAATTAGCTTTTGTAATATATACCCGTAGGTAAGTTCGAGCATCATATTGTCAAGCACTTTACAATTTTTCCATGTGTGGTTATTTTAATAATGTC] consensusID : consensus_2418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1093 fasta sequence [AACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGTAGGTGTTGGCTACTCGATCAAATCGGTTCTCGTGTGCGCCGGCCCGATGCGCTTTCGTCTTGAGTTGGGGATACCCTTATTGCTTGTCCTTTCGTACTAAACAGTAGTCGTATCGTTTTTCACAAATGTAGAAATCCATTTCGCACAAACCTTCAGTCCGATCGCTACTGAATGACGCGCTTTCCTTAGGTGTCTGAAAATGTTAGAAGGAATAAATGAATAAAATGATGGCTTAGGCTATAGAGAGTCGTAGCTGGTCTTGGAGCTGATTCCCATAATCATGCCTCAGGGATGAATGCACAAACAGGAGTGAACAGGTGAAATAATCTTATGGTCTAATTTAGGCATTTTCTTGTACTAACGATACATCAAAAGTTCAAGAAAAGTCTCAAGTTGTTCGACTGGAGCAAACTCAGTTCCTTGAGAGGAATTAAACTCAGCCAGTTGGGCTTCTTGCCGCCTGACCATCTGAGCTGTTTCCTGTTTCTGTGTTTTGATTTCATATTTATCTAAAAAGTATACTTTTCCACCACTGAAAAGATTGTTATGAGCTCATCCCATGGACTGTAGCAGTCAACATCTGATGAGTGTTCTGAGTAAGGACAATAAAAATGTGCAGTGTGAACTTGGGGGTGGAAAATACAACAATGTTGCTTCTTGCTTGTCTACACTCATCTTTTAGTCTAAGGAAAAAA] [+] EMBL AK067188 [AACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGTAGGTGTTGGCTACTCGATCAAATCGGTTCTCGTGTGCGCCGGCCCGATGCGCTTTCGTCTTGAGTTGGGGATACCCTTATTGCTTGTCCTTTCGTACTAAACAGTAGTCGTATCGTTTTTCACAAATGTAGAAATCCATTTCGCACAAACCTTCAGTCCGATCGCTACTGAATGACGCGCTTTCCTTAGGTGTCTGAAAATGTTAGAAGGAATAAATGAATAAAATGATGGCTTAGGCTATAGAGAGTCGTAGCTGGTCTTGGAGCTGATTCCCATAATCATGCCTCAGGGATGAATGCACAAACAGGAGTGAACAGGTGAAATAATCTTATGGTCTAATTTAGGCATTTTCTTGTACTAACGATACATCAAAAGTTCAAGAAAAGTCTCAAGTTGTTCGACTGGAGCAAACTCAGTTCCTTGAGAGGAATTAAACTCAGCCAGTTGGGCTTCTTGCCGCCTGACCATCTGAGCTGTTTCCTGTTTCTGTGTTTTGATTTCATATTTATCTAAAAAGTATACTTTTCCACCACTGAAAAGATTGTTATGAGCTCATCCCATGGACTGTAGCAGTCAACATCTGATGAGTGTTCTGAGTAAGGACAATAAAAATGTGCAGTGTGAACTTGGGGGTGGAAAATACAACAATGTTGCTTCTTGCTTGTCTACACTCATCTTTTAGTCTAAGGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2418#0 AAGCCAGATTCATGTCATCGTGTGTAGAAACTAGAAACTGGAGTACAAGTGAAGAAAACA 60 consensus_2418#1 ------------------------------------------------------------ consensus_2418#0 AAACGAAAATTTTCTGATCCCCGCCTCGTCCGAAGCCCTAAACCCCCAAACGCCGCCTCC 120 consensus_2418#1 ----------------------------------------AACCCCCAAACGCCGCCTCC 20 ******************** consensus_2418#0 TCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGC 180 consensus_2418#1 TCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGC 80 ************************************************************ consensus_2418#0 AAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTC 240 consensus_2418#1 AAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTC 140 ************************************************************ consensus_2418#0 CTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGC 300 consensus_2418#1 CTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGC 200 ************************************************************ consensus_2418#0 CGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCC 360 consensus_2418#1 CGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCC 260 ************************************************************ consensus_2418#0 ACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGC 420 consensus_2418#1 ACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGC 320 ************************************************************ consensus_2418#0 GGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTC 480 consensus_2418#1 GGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTC 380 ************************************************************ consensus_2418#0 GAGGCATCCCTCATGGGGTATTCCTTATTTCTTGCTCTAGTTATTGACCGGCTCCACCAA 540 consensus_2418#1 GAGGCATCCCTCATGGGTAGGTGTTGGCTACTCGATCAAATCGGTTCTCGTGTGCGCCGG 440 ***************** * * * ** * ** * * * ** * * ** consensus_2418#0 TACATCAGAGAGCTACGTGGGCTAAAGAAGAATGTTGAGGCCGTAACTAAGCATAATAAA 600 consensus_2418#1 CCCGATGCGCTTTCGTCTTGAGTTGGGGATACCCTTATTGCT-TGTCCTTTCGTACTAAA 499 * * * * * * * ** ** * * * ** **** consensus_2418#0 ATGTTGGAGGAAG------CA-AAACATGGAAGATCTGAGGAGACAAAGAAATACCAAGA 653 consensus_2418#1 CAGTAGTCGTATCGTTTTTCACAAATGTAGAAATCCATTTCGCACAAACCTTCAGTCCGA 559 ** * * * ** *** * *** * ***** * ** consensus_2418#0 -----AGAGATTG--GTGCTCTCAATGAGGATATGAAGAAACT-GAAGCTACAAGTCCAA 705 consensus_2418#1 TCGCTACTGAATGACGCGCTTTCCTTAGGTGTCTGAAAATGTTAGAAGGAATAAATGAAT 619 * ** ** * *** ** * * * **** * * **** * ** * * consensus_2418#0 GAAAAGACAGAGGAAGTCCACGTTGCTGAGGACAAGGCTC----TTGCTATTCGGAAACA 761 consensus_2418#1 AAAATGATGGCTTAGGCTATAGAGAGTCGTAGCTGGTCTTGGAGCTGATTCCCATAATCA 679 *** ** * * * * * * * ** ** * * ** ** consensus_2418#0 -ATCTGAAAGCCTGCTGCTTGAGTATGACCGTTT-GCTGGAGGACAACCAGCATCTCCGG 819 consensus_2418#1 TGCCTCAGGGATGAATGCACAAACAGGAGTGAACAGGTGAAATAATCTTATGGTCTAATT 739 ** * * *** * * ** * * ** * * * *** consensus_2418#0 GAGCAGCTGCAGTCAATTGACCACAGGCTCTCCAGTCCAAAATAAGT----------TCA 869 consensus_2418#1 TAGGCATTTTCTTGTACTAACGATACA-TCAAAAGTTCAAGAAAAGTCTCAAGTTGTTCG 798 ** * * * * ** * * ** *** *** * **** ** consensus_2418#0 AGTGTAATATTTTTTTTTCCTATGGGATTGGAGAACCTAGTCAATATA--TTGCTGCAGA 927 consensus_2418#1 ACTGGAGCAAACTCAGTTCCTTGAGAGGAATTAAACTCAGCCAGTTGGGCTTCTTGCCGC 858 * ** * * * ***** * *** ** ** * ** *** * consensus_2418#0 AAATTTTCCATCACAGTTTTGGAAAAAAAAAGTTTACTTTTATCGTAGAATACCAAGAAA 987 consensus_2418#1 CTGACCATCTGAGCTGTTTCCTGTTTCTGTGTTTTGATTTCATATTTATCTAAAAAGTAT 918 * * **** *** *** ** * ** *** * consensus_2418#0 ---TTCCTGGCGGTAAAATCATTTGGATTTAATGCTCATATAATATGCTTTTAGCAGTAT 1044 consensus_2418#1 ACTTTTCCACCACTGAAAAGATT---GTTATGAGCTCATCCCATG-GACTGTAGCAGTCA 974 ** * * * *** *** ** ****** ** * * ******* consensus_2418#0 TCTCCCTTATCAGTTTTATCATCTTTGCTTAATTAGCTTTTGTAATATATACCCGTAGGT 1104 consensus_2418#1 ACATC-TGATGAGTGTTCTGAG-TAAGGACAATAAAAATGTGCAGTGTGAACTTGGGGGT 1032 * * * ** *** ** * * * * *** * * ** * * * ** * *** consensus_2418#0 AAGTTCGAGCATCATATTGTCAAGCACTTTACAATTTTTCCATGTGTGGTTATTTTAATA 1164 consensus_2418#1 GGAAAATACAACAATGTTGCTTCTTGCTTGTCTACACTCATCTTTTAGTCTAAGGAAAAA 1092 * * ** *** *** * * * * * * ** ** * consensus_2418#0 ATGTC 1169 consensus_2418#1 A---- 1093 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||