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Oryza sativa
cluster # 2418 cluster # 2418       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2418#0 length = 1169 sequences # 1  
consensus_2418#1 length = 1093 sequences # 1  

consensusID : consensus_2418#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1169
fasta sequence
                              [AAGCCAGATTCATGTCATCGTGTGTAGAAACTAGAAACTGGAGTACAAGTGAAGAAAACAAAACGAAAATTTTCTGATCCCCGCCTCGTCCGAAGCCCTAAACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGGTATTCCTTATTTCTTGCTCTAGTTATTGACCGGCTCCACCAATACATCAGAGAGCTACGTGGGCTAAAGAAGAATGTTGAGGCCGTAACTAAGCATAATAAAATGTTGGAGGAAGCAAAACATGGAAGATCTGAGGAGACAAAGAAATACCAAGAAGAGATTGGTGCTCTCAATGAGGATATGAAGAAACTGAAGCTACAAGTCCAAGAAAAGACAGAGGAAGTCCACGTTGCTGAGGACAAGGCTCTTGCTATTCGGAAACAATCTGAAAGCCTGCTGCTTGAGTATGACCGTTTGCTGGAGGACAACCAGCATCTCCGGGAGCAGCTGCAGTCAATTGACCACAGGCTCTCCAGTCCAAAATAAGTTCAAGTGTAATATTTTTTTTTCCTATGGGATTGGAGAACCTAGTCAATATATTGCTGCAGAAAATTTTCCATCACAGTTTTGGAAAAAAAAAGTTTACTTTTATCGTAGAATACCAAGAAATTCCTGGCGGTAAAATCATTTGGATTTAATGCTCATATAATATGCTTTTAGCAGTATTCTCCCTTATCAGTTTTATCATCTTTGCTTAATTAGCTTTTGTAATATATACCCGTAGGTAAGTTCGAGCATCATATTGTCAAGCACTTTACAATTTTTCCATGTGTGGTTATTTTAATAATGTC]

[+] EMBL AK070852             [AAGCCAGATTCATGTCATCGTGTGTAGAAACTAGAAACTGGAGTACAAGTGAAGAAAACAAAACGAAAATTTTCTGATCCCCGCCTCGTCCGAAGCCCTAAACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGGTATTCCTTATTTCTTGCTCTAGTTATTGACCGGCTCCACCAATACATCAGAGAGCTACGTGGGCTAAAGAAGAATGTTGAGGCCGTAACTAAGCATAATAAAATGTTGGAGGAAGCAAAACATGGAAGATCTGAGGAGACAAAGAAATACCAAGAAGAGATTGGTGCTCTCAATGAGGATATGAAGAAACTGAAGCTACAAGTCCAAGAAAAGACAGAGGAAGTCCACGTTGCTGAGGACAAGGCTCTTGCTATTCGGAAACAATCTGAAAGCCTGCTGCTTGAGTATGACCGTTTGCTGGAGGACAACCAGCATCTCCGGGAGCAGCTGCAGTCAATTGACCACAGGCTCTCCAGTCCAAAATAAGTTCAAGTGTAATATTTTTTTTTCCTATGGGATTGGAGAACCTAGTCAATATATTGCTGCAGAAAATTTTCCATCACAGTTTTGGAAAAAAAAAGTTTACTTTTATCGTAGAATACCAAGAAATTCCTGGCGGTAAAATCATTTGGATTTAATGCTCATATAATATGCTTTTAGCAGTATTCTCCCTTATCAGTTTTATCATCTTTGCTTAATTAGCTTTTGTAATATATACCCGTAGGTAAGTTCGAGCATCATATTGTCAAGCACTTTACAATTTTTCCATGTGTGGTTATTTTAATAATGTC]


>consensus_2418#0 AAGCCAGATTCATGTCATCGTGTGTAGAAACTAGAAACTGGAGTACAAGTGAAGAAAACA AAACGAAAATTTTCTGATCCCCGCCTCGTCCGAAGCCCTAAACCCCCAAACGCCGCCTCC TCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGC AAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTC CTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGC CGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCC ACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGC GGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTC GAGGCATCCCTCATGGGGTATTCCTTATTTCTTGCTCTAGTTATTGACCGGCTCCACCAA TACATCAGAGAGCTACGTGGGCTAAAGAAGAATGTTGAGGCCGTAACTAAGCATAATAAA ATGTTGGAGGAAGCAAAACATGGAAGATCTGAGGAGACAAAGAAATACCAAGAAGAGATT GGTGCTCTCAATGAGGATATGAAGAAACTGAAGCTACAAGTCCAAGAAAAGACAGAGGAA GTCCACGTTGCTGAGGACAAGGCTCTTGCTATTCGGAAACAATCTGAAAGCCTGCTGCTT GAGTATGACCGTTTGCTGGAGGACAACCAGCATCTCCGGGAGCAGCTGCAGTCAATTGAC CACAGGCTCTCCAGTCCAAAATAAGTTCAAGTGTAATATTTTTTTTTCCTATGGGATTGG AGAACCTAGTCAATATATTGCTGCAGAAAATTTTCCATCACAGTTTTGGAAAAAAAAAGT TTACTTTTATCGTAGAATACCAAGAAATTCCTGGCGGTAAAATCATTTGGATTTAATGCT CATATAATATGCTTTTAGCAGTATTCTCCCTTATCAGTTTTATCATCTTTGCTTAATTAG CTTTTGTAATATATACCCGTAGGTAAGTTCGAGCATCATATTGTCAAGCACTTTACAATT TTTCCATGTGTGGTTATTTTAATAATGTC



consensusID : consensus_2418#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1093
fasta sequence
                              [AACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGTAGGTGTTGGCTACTCGATCAAATCGGTTCTCGTGTGCGCCGGCCCGATGCGCTTTCGTCTTGAGTTGGGGATACCCTTATTGCTTGTCCTTTCGTACTAAACAGTAGTCGTATCGTTTTTCACAAATGTAGAAATCCATTTCGCACAAACCTTCAGTCCGATCGCTACTGAATGACGCGCTTTCCTTAGGTGTCTGAAAATGTTAGAAGGAATAAATGAATAAAATGATGGCTTAGGCTATAGAGAGTCGTAGCTGGTCTTGGAGCTGATTCCCATAATCATGCCTCAGGGATGAATGCACAAACAGGAGTGAACAGGTGAAATAATCTTATGGTCTAATTTAGGCATTTTCTTGTACTAACGATACATCAAAAGTTCAAGAAAAGTCTCAAGTTGTTCGACTGGAGCAAACTCAGTTCCTTGAGAGGAATTAAACTCAGCCAGTTGGGCTTCTTGCCGCCTGACCATCTGAGCTGTTTCCTGTTTCTGTGTTTTGATTTCATATTTATCTAAAAAGTATACTTTTCCACCACTGAAAAGATTGTTATGAGCTCATCCCATGGACTGTAGCAGTCAACATCTGATGAGTGTTCTGAGTAAGGACAATAAAAATGTGCAGTGTGAACTTGGGGGTGGAAAATACAACAATGTTGCTTCTTGCTTGTCTACACTCATCTTTTAGTCTAAGGAAAAAA]

[+] EMBL AK067188             [AACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGTAGGTGTTGGCTACTCGATCAAATCGGTTCTCGTGTGCGCCGGCCCGATGCGCTTTCGTCTTGAGTTGGGGATACCCTTATTGCTTGTCCTTTCGTACTAAACAGTAGTCGTATCGTTTTTCACAAATGTAGAAATCCATTTCGCACAAACCTTCAGTCCGATCGCTACTGAATGACGCGCTTTCCTTAGGTGTCTGAAAATGTTAGAAGGAATAAATGAATAAAATGATGGCTTAGGCTATAGAGAGTCGTAGCTGGTCTTGGAGCTGATTCCCATAATCATGCCTCAGGGATGAATGCACAAACAGGAGTGAACAGGTGAAATAATCTTATGGTCTAATTTAGGCATTTTCTTGTACTAACGATACATCAAAAGTTCAAGAAAAGTCTCAAGTTGTTCGACTGGAGCAAACTCAGTTCCTTGAGAGGAATTAAACTCAGCCAGTTGGGCTTCTTGCCGCCTGACCATCTGAGCTGTTTCCTGTTTCTGTGTTTTGATTTCATATTTATCTAAAAAGTATACTTTTCCACCACTGAAAAGATTGTTATGAGCTCATCCCATGGACTGTAGCAGTCAACATCTGATGAGTGTTCTGAGTAAGGACAATAAAAATGTGCAGTGTGAACTTGGGGGTGGAAAATACAACAATGTTGCTTCTTGCTTGTCTACACTCATCTTTTAGTCTAAGGAAAAAA]


>consensus_2418#1 AACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACG AAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGG CGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGA TCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCG TCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGG GAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCC TCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGTAGGTGTTGGCTACTCGATCAAA TCGGTTCTCGTGTGCGCCGGCCCGATGCGCTTTCGTCTTGAGTTGGGGATACCCTTATTG CTTGTCCTTTCGTACTAAACAGTAGTCGTATCGTTTTTCACAAATGTAGAAATCCATTTC GCACAAACCTTCAGTCCGATCGCTACTGAATGACGCGCTTTCCTTAGGTGTCTGAAAATG TTAGAAGGAATAAATGAATAAAATGATGGCTTAGGCTATAGAGAGTCGTAGCTGGTCTTG GAGCTGATTCCCATAATCATGCCTCAGGGATGAATGCACAAACAGGAGTGAACAGGTGAA ATAATCTTATGGTCTAATTTAGGCATTTTCTTGTACTAACGATACATCAAAAGTTCAAGA AAAGTCTCAAGTTGTTCGACTGGAGCAAACTCAGTTCCTTGAGAGGAATTAAACTCAGCC AGTTGGGCTTCTTGCCGCCTGACCATCTGAGCTGTTTCCTGTTTCTGTGTTTTGATTTCA TATTTATCTAAAAAGTATACTTTTCCACCACTGAAAAGATTGTTATGAGCTCATCCCATG GACTGTAGCAGTCAACATCTGATGAGTGTTCTGAGTAAGGACAATAAAAATGTGCAGTGT GAACTTGGGGGTGGAAAATACAACAATGTTGCTTCTTGCTTGTCTACACTCATCTTTTAG TCTAAGGAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2418#0      AAGCCAGATTCATGTCATCGTGTGTAGAAACTAGAAACTGGAGTACAAGTGAAGAAAACA 60
consensus_2418#1      ------------------------------------------------------------
                                                                                  

consensus_2418#0      AAACGAAAATTTTCTGATCCCCGCCTCGTCCGAAGCCCTAAACCCCCAAACGCCGCCTCC 120
consensus_2418#1      ----------------------------------------AACCCCCAAACGCCGCCTCC 20
                                                              ********************

consensus_2418#0      TCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGC 180
consensus_2418#1      TCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGC 80
                      ************************************************************

consensus_2418#0      AAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTC 240
consensus_2418#1      AAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTC 140
                      ************************************************************

consensus_2418#0      CTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGC 300
consensus_2418#1      CTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGC 200
                      ************************************************************

consensus_2418#0      CGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCC 360
consensus_2418#1      CGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCC 260
                      ************************************************************

consensus_2418#0      ACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGC 420
consensus_2418#1      ACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGC 320
                      ************************************************************

consensus_2418#0      GGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTC 480
consensus_2418#1      GGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTC 380
                      ************************************************************

consensus_2418#0      GAGGCATCCCTCATGGGGTATTCCTTATTTCTTGCTCTAGTTATTGACCGGCTCCACCAA 540
consensus_2418#1      GAGGCATCCCTCATGGGTAGGTGTTGGCTACTCGATCAAATCGGTTCTCGTGTGCGCCGG 440
                      *****************    *  *   * ** * ** * *   *   **  * * **  

consensus_2418#0      TACATCAGAGAGCTACGTGGGCTAAAGAAGAATGTTGAGGCCGTAACTAAGCATAATAAA 600
consensus_2418#1      CCCGATGCGCTTTCGTCTTGAGTTGGGGATACCCTTATTGCT-TGTCCTTTCGTACTAAA 499
                        *              * *  *   * * *   **   **  *  *    * ** ****

consensus_2418#0      ATGTTGGAGGAAG------CA-AAACATGGAAGATCTGAGGAGACAAAGAAATACCAAGA 653
consensus_2418#1      CAGTAGTCGTATCGTTTTTCACAAATGTAGAAATCCATTTCGCACAAACCTTCAGTCCGA 559
                        ** *  * *        ** ***  * ***   *       *****     *    **

consensus_2418#0      -----AGAGATTG--GTGCTCTCAATGAGGATATGAAGAAACT-GAAGCTACAAGTCCAA 705
consensus_2418#1      TCGCTACTGAATGACGCGCTTTCCTTAGGTGTCTGAAAATGTTAGAAGGAATAAATGAAT 619
                           *  ** **  * *** **  *  *  * **** *   * ****  * ** *  * 

consensus_2418#0      GAAAAGACAGAGGAAGTCCACGTTGCTGAGGACAAGGCTC----TTGCTATTCGGAAACA 761
consensus_2418#1      AAAATGATGGCTTAGGCTATAGAGAGTCGTAGCTGGTCTTGGAGCTGATTCCCATAATCA 679
                       *** **  *   * *     *    *     *  * **      ** *   *  ** **

consensus_2418#0      -ATCTGAAAGCCTGCTGCTTGAGTATGACCGTTT-GCTGGAGGACAACCAGCATCTCCGG 819
consensus_2418#1      TGCCTCAGGGATGAATGCACAAACAGGAGTGAACAGGTGAAATAATCTTATGGTCTAATT 739
                         ** *  *     ***   *  * **  *    * ** *  *     *   ***    

consensus_2418#0      GAGCAGCTGCAGTCAATTGACCACAGGCTCTCCAGTCCAAAATAAGT----------TCA 869
consensus_2418#1      TAGGCATTTTCTTGTACTAACGATACA-TCAAAAGTTCAAGAAAAGTCTCAAGTTGTTCG 798
                       **    *    *  * * ** * *   **   *** *** * ****          ** 

consensus_2418#0      AGTGTAATATTTTTTTTTCCTATGGGATTGGAGAACCTAGTCAATATA--TTGCTGCAGA 927
consensus_2418#1      ACTGGAGCAAACTCAGTTCCTTGAGAGGAATTAAACTCAGCCAGTTGGGCTTCTTGCCGC 858
                      * ** *  *   *   *****   *        ***  ** ** *     **  *** * 

consensus_2418#0      AAATTTTCCATCACAGTTTTGGAAAAAAAAAGTTTACTTTTATCGTAGAATACCAAGAAA 987
consensus_2418#1      CTGACCATCTGAGCTGTTTCCTGTTTCTGTGTTTTGATTTCATATTTATCTAAAAAGTAT 918
                              *    * ****             ***  *** **  *    **  *** * 

consensus_2418#0      ---TTCCTGGCGGTAAAATCATTTGGATTTAATGCTCATATAATATGCTTTTAGCAGTAT 1044
consensus_2418#1      ACTTTTCCACCACTGAAAAGATT---GTTATGAGCTCATCCCATG-GACTGTAGCAGTCA 974
                         ** *   *  * ***  ***    **    ******   **  *  * *******  

consensus_2418#0      TCTCCCTTATCAGTTTTATCATCTTTGCTTAATTAGCTTTTGTAATATATACCCGTAGGT 1104
consensus_2418#1      ACATC-TGATGAGTGTTCTGAG-TAAGGACAATAAAAATGTGCAGTGTGAACTTGGGGGT 1032
                       *  * * ** *** ** * *  *  *   *** *   * ** * * *  **  *  ***

consensus_2418#0      AAGTTCGAGCATCATATTGTCAAGCACTTTACAATTTTTCCATGTGTGGTTATTTTAATA 1164
consensus_2418#1      GGAAAATACAACAATGTTGCTTCTTGCTTGTCTACACTCATCTTTTAGTCTAAGGAAAAA 1092
                             *  *  ** ***       ***  * *   *    * *  *  **    ** *

consensus_2418#0      ATGTC 1169
consensus_2418#1      A---- 1093
                      *    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)