These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [TTTTTTTTTTTCCAAGGCATGCACTTTTTTCTTTTCACAAATATATCTAAAATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGGCCAGCAGGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAAATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTGTGGCCTTTGAATCCATGAATCACTCGGACAGGTGTCCTTGTCTTGATGCAATTCTTCAAGGCAAGATTTCCCTCTCTAGCTGTTGATCCTCACCCTTTTTTTACCACA] [+] EMBL CA762369 [TTTTTTTTTTTCCAAGGCATGCACTTTTTTCTTTTCACAAATATATCTAAAATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGGCCAGCAGGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAAATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTGTGGCCTTTGAATCCATGAATCACTCGGACAGGTGTCCTTGTCTTGATGCAATTCTTCAAGGCAAGATTTCCCTCTCTAGCTGTTGATCCTCACCCTTTTTTTACCACA] consensusID : consensus_2420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [TTTTTTTGCACAAGGCAAGAAACGGTTATATTCCAATGCATGCACTTTTTTCTTTTCACAAATATATCTAAGATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGACCAGCATGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAGATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTTTGGCCTTTGAATCCCCCCTTGTCT] [+] EMBL CA763107 [TTTTTTTGCACAAGGCAAGAAACGGTTATATTCCAATGCATGCACTTTTTTCTTTTCACAAATATATCTAAGATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGACCAGCATGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAGATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTTTGGCCTTTGAATCCCCCCTTGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2420#0 ---------------------TTTTTTTTTTTCCAAGGCATGCACTTTTTTCTTTTCACA 39 consensus_2420#1 TTTTTTTGCACAAGGCAAGAAACGGTTATATTCCAATGCATGCACTTTTTTCTTTTCACA 60 ** * ****** *********************** consensus_2420#0 AATATATCTAAAATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAAT 99 consensus_2420#1 AATATATCTAAGATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAAT 120 *********** ************************************************ consensus_2420#0 ATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGAT 159 consensus_2420#1 ATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGAT 180 ************************************************************ consensus_2420#0 CTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCC 219 consensus_2420#1 CTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCC 240 ************************************************************ consensus_2420#0 CTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTAC 279 consensus_2420#1 CTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTAC 300 ************************************************************ consensus_2420#0 TACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAAC 339 consensus_2420#1 TACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAAC 360 ************************************************************ consensus_2420#0 TATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCAC 399 consensus_2420#1 TATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCAC 420 ************************************************************ consensus_2420#0 CCAGGACAAAAAAAATACATCTTGATTCTCATCGGCCAGCAGGAATTCTTTGTAGTCTGT 459 consensus_2420#1 CCAGGACAAAAAAAATACATCTTGATTCTCATCGACCAGCATGAATTCTTTGTAGTCTGT 480 ********************************** ****** ****************** consensus_2420#0 ATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACC 519 consensus_2420#1 ATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACC 540 ************************************************************ consensus_2420#0 CATCATAAGTAAATGCTGAAATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTGT 579 consensus_2420#1 CATCATAAGTAAATGCTGAGATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTTT 600 ******************* ************************************** * consensus_2420#0 GGCCTTTGAATCCATGAATCACTCGGACAGGTGTCCTTGTCTTGATGCAATTCTTCAAGG 639 consensus_2420#1 GGCCTTTGAATCCCCCCTTGTCT------------------------------------- 623 ************* * ** consensus_2420#0 CAAGATTTCCCTCTCTAGCTGTTGATCCTCACCCTTTTTTTACCACA 686 consensus_2420#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||