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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2420 cluster # 2420       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2420#0 length = 686 sequences # 1  
consensus_2420#1 length = 623 sequences # 1  

consensusID : consensus_2420#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence
                              [TTTTTTTTTTTCCAAGGCATGCACTTTTTTCTTTTCACAAATATATCTAAAATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGGCCAGCAGGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAAATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTGTGGCCTTTGAATCCATGAATCACTCGGACAGGTGTCCTTGTCTTGATGCAATTCTTCAAGGCAAGATTTCCCTCTCTAGCTGTTGATCCTCACCCTTTTTTTACCACA]

[+] EMBL CA762369             [TTTTTTTTTTTCCAAGGCATGCACTTTTTTCTTTTCACAAATATATCTAAAATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGGCCAGCAGGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAAATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTGTGGCCTTTGAATCCATGAATCACTCGGACAGGTGTCCTTGTCTTGATGCAATTCTTCAAGGCAAGATTTCCCTCTCTAGCTGTTGATCCTCACCCTTTTTTTACCACA]


>consensus_2420#0 TTTTTTTTTTTCCAAGGCATGCACTTTTTTCTTTTCACAAATATATCTAAAATTGCATGG TTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGG CTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTG TTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACAT GACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAAT AGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGG CCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATC TTGATTCTCATCGGCCAGCAGGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTT TTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAAA TTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTGTGGCCTTTGAATCCATGAATCA CTCGGACAGGTGTCCTTGTCTTGATGCAATTCTTCAAGGCAAGATTTCCCTCTCTAGCTG TTGATCCTCACCCTTTTTTTACCACA



consensusID : consensus_2420#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence
                              [TTTTTTTGCACAAGGCAAGAAACGGTTATATTCCAATGCATGCACTTTTTTCTTTTCACAAATATATCTAAGATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGACCAGCATGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAGATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTTTGGCCTTTGAATCCCCCCTTGTCT]

[+] EMBL CA763107             [TTTTTTTGCACAAGGCAAGAAACGGTTATATTCCAATGCATGCACTTTTTTCTTTTCACAAATATATCTAAGATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGACCAGCATGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAGATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTTTGGCCTTTGAATCCCCCCTTGTCT]


>consensus_2420#1 TTTTTTTGCACAAGGCAAGAAACGGTTATATTCCAATGCATGCACTTTTTTCTTTTCACA AATATATCTAAGATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAAT ATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGAT CTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCC CTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTAC TACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAAC TATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCAC CCAGGACAAAAAAAATACATCTTGATTCTCATCGACCAGCATGAATTCTTTGTAGTCTGT ATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACC CATCATAAGTAAATGCTGAGATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTTT GGCCTTTGAATCCCCCCTTGTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2420#0      ---------------------TTTTTTTTTTTCCAAGGCATGCACTTTTTTCTTTTCACA 39
consensus_2420#1      TTTTTTTGCACAAGGCAAGAAACGGTTATATTCCAATGCATGCACTTTTTTCTTTTCACA 60
                                               ** * ****** ***********************

consensus_2420#0      AATATATCTAAAATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAAT 99
consensus_2420#1      AATATATCTAAGATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAAT 120
                      *********** ************************************************

consensus_2420#0      ATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGAT 159
consensus_2420#1      ATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGAT 180
                      ************************************************************

consensus_2420#0      CTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCC 219
consensus_2420#1      CTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCC 240
                      ************************************************************

consensus_2420#0      CTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTAC 279
consensus_2420#1      CTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTAC 300
                      ************************************************************

consensus_2420#0      TACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAAC 339
consensus_2420#1      TACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAAC 360
                      ************************************************************

consensus_2420#0      TATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCAC 399
consensus_2420#1      TATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCAC 420
                      ************************************************************

consensus_2420#0      CCAGGACAAAAAAAATACATCTTGATTCTCATCGGCCAGCAGGAATTCTTTGTAGTCTGT 459
consensus_2420#1      CCAGGACAAAAAAAATACATCTTGATTCTCATCGACCAGCATGAATTCTTTGTAGTCTGT 480
                      ********************************** ****** ******************

consensus_2420#0      ATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACC 519
consensus_2420#1      ATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACC 540
                      ************************************************************

consensus_2420#0      CATCATAAGTAAATGCTGAAATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTGT 579
consensus_2420#1      CATCATAAGTAAATGCTGAGATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTTT 600
                      ******************* ************************************** *

consensus_2420#0      GGCCTTTGAATCCATGAATCACTCGGACAGGTGTCCTTGTCTTGATGCAATTCTTCAAGG 639
consensus_2420#1      GGCCTTTGAATCCCCCCTTGTCT------------------------------------- 623
                      *************     *  **                                     

consensus_2420#0      CAAGATTTCCCTCTCTAGCTGTTGATCCTCACCCTTTTTTTACCACA 686
consensus_2420#1      -----------------------------------------------
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)