cluster # 2426

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Oryza sativa
cluster # 2426 cluster # 2426 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2426#0 length = 476 sequences # 1

consensus_2426#1 length = 401 sequences # 1

consensusID : consensus_2426#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence

                              [AAGCATTGATGGCTTTAAACAATGTGATGCAGCTCACAACTTGTATTCCGATACCGCAAAACTCTGCAACTTTGTTGGTCATGCATATGAGAAGTCCAAGAAAATGGCCGCTGCTGCTTTAGCATACAAGTGTGTCGAAGTAGCCTATCTCGAGGCTGCATACTATAAATACCCTACTGCAAGCAAGGATCGCCAGATGTTGCAGGCAATTGTACATAATCCACCAGGAGAATCACCATCATCTTCTGCCTCATACATTGATAATTTAAATAACAATGGATTATCTAAGGGCCCTTCAAGCAAGGATGCTAATTCGCCCCAAGTTACCGGGAACAATTTGTTACTAGCTGCTCGCAATCAACCACACTTGACAAGGTTACTAGCCTATACAAATGATGTCAACTGTGCCTTCGATGCAACTCGGAAATCACAGATGGCAATTGCTTCGGCTGCTAGCAACCAAGAAAATGGAATAG]

[+] EMBL CB664026             [AAGCATTGATGGCTTTAAACAATGTGATGCAGCTCACAACTTGTATTCCGATACCGCAAAACTCTGCAACTTTGTTGGTCATGCATATGAGAAGTCCAAGAAAATGGCCGCTGCTGCTTTAGCATACAAGTGTGTCGAAGTAGCCTATCTCGAGGCTGCATACTATAAATACCCTACTGCAAGCAAGGATCGCCAGATGTTGCAGGCAATTGTACATAATCCACCAGGAGAATCACCATCATCTTCTGCCTCATACATTGATAATTTAAATAACAATGGATTATCTAAGGGCCCTTCAAGCAAGGATGCTAATTCGCCCCAAGTTACCGGGAACAATTTGTTACTAGCTGCTCGCAATCAACCACACTTGACAAGGTTACTAGCCTATACAAATGATGTCAACTGTGCCTTCGATGCAACTCGGAAATCACAGATGGCAATTGCTTCGGCTGCTAGCAACCAAGAAAATGGAATAG]




>consensus_2426#0
AAGCATTGATGGCTTTAAACAATGTGATGCAGCTCACAACTTGTATTCCGATACCGCAAA
ACTCTGCAACTTTGTTGGTCATGCATATGAGAAGTCCAAGAAAATGGCCGCTGCTGCTTT
AGCATACAAGTGTGTCGAAGTAGCCTATCTCGAGGCTGCATACTATAAATACCCTACTGC
AAGCAAGGATCGCCAGATGTTGCAGGCAATTGTACATAATCCACCAGGAGAATCACCATC
ATCTTCTGCCTCATACATTGATAATTTAAATAACAATGGATTATCTAAGGGCCCTTCAAG
CAAGGATGCTAATTCGCCCCAAGTTACCGGGAACAATTTGTTACTAGCTGCTCGCAATCA
ACCACACTTGACAAGGTTACTAGCCTATACAAATGATGTCAACTGTGCCTTCGATGCAAC
TCGGAAATCACAGATGGCAATTGCTTCGGCTGCTAGCAACCAAGAAAATGGAATAG

consensusID : consensus_2426#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [GATAATTTAAATAGCCATGGATTGTCAAAGGCCCTTTCAACCAAGGGTGGAAACTCACCCCAAGTGGCTGGCAACCATTTGCCACTGGCCGTTCGTAACCAAGCACACTTATTGAGGTTACTTGCCTATACAAATGATGTCAATTGTGCATTCGATGCAACTCGGAAATCACAGGTTGCTATTGCTTCTGCTGCTAGCAGTCAGGAAAGGGGAAAAACTGTGGACGATGGTCTTGCTTCAGTAAGAACAGTTTTAGATTTTAACTTCAACAATGTCAATGAGCTACTGAGACTTGTCCGGCTTTCTATGGAGTTAATCAACACCTGATATGTTCAGAATTGCATGAAATGGCACCCCATGAATAGCTATTGTTGGAATGCCTGGCTGCAGTTACCTCAGCA]

[+] EMBL CF304041             [GATAATTTAAATAGCCATGGATTGTCAAAGGCCCTTTCAACCAAGGGTGGAAACTCACCCCAAGTGGCTGGCAACCATTTGCCACTGGCCGTTCGTAACCAAGCACACTTATTGAGGTTACTTGCCTATACAAATGATGTCAATTGTGCATTCGATGCAACTCGGAAATCACAGGTTGCTATTGCTTCTGCTGCTAGCAGTCAGGAAAGGGGAAAAACTGTGGACGATGGTCTTGCTTCAGTAAGAACAGTTTTAGATTTTAACTTCAACAATGTCAATGAGCTACTGAGACTTGTCCGGCTTTCTATGGAGTTAATCAACACCTGATATGTTCAGAATTGCATGAAATGGCACCCCATGAATAGCTATTGTTGGAATGCCTGGCTGCAGTTACCTCAGCA]




>consensus_2426#1
GATAATTTAAATAGCCATGGATTGTCAAAGGCCCTTTCAACCAAGGGTGGAAACTCACCC
CAAGTGGCTGGCAACCATTTGCCACTGGCCGTTCGTAACCAAGCACACTTATTGAGGTTA
CTTGCCTATACAAATGATGTCAATTGTGCATTCGATGCAACTCGGAAATCACAGGTTGCT
ATTGCTTCTGCTGCTAGCAGTCAGGAAAGGGGAAAAACTGTGGACGATGGTCTTGCTTCA
GTAAGAACAGTTTTAGATTTTAACTTCAACAATGTCAATGAGCTACTGAGACTTGTCCGG
CTTTCTATGGAGTTAATCAACACCTGATATGTTCAGAATTGCATGAAATGGCACCCCATG
AATAGCTATTGTTGGAATGCCTGGCTGCAGTTACCTCAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2426#0      AAGCATTGATGGCTTTAAACAATGTGATGCAGCTCACAACTTGTATTCCGATACCGCAAA 60
consensus_2426#1      -------GATAATTTAAATAGCCATGGATTGTCAAAGGCCCTTTCAACCAAGGGTGGAAA 53
                             ***   ** **      **      *  *   * * *   ** *    * ***

consensus_2426#0      ACTCTGCAACTTTGTTGGTCATGCATATGAGAAGTCCAAGAAAATGGCCGCTGCTGCTTT 120
consensus_2426#1      CTCACCCCAAGTGGCTGG-CAACCATTTG------CCAC-----TGGCCGTTCGTAACCA 101
                            * *  * * *** **  *** **      ***      ****** *  *     

consensus_2426#0      AGCATACAAGTGTGTCGAAGTAGCCTATCTCGAGGCTGCATACTATAAATACCCTACTGC 180
consensus_2426#1      AGCACACTTATTGAGGTTACTTGCCTATACAAATGATGTCAATTGTGCATTCGATGCAAC 161
                      **** **   *       * * ******    * * **   * * *  ** *  * *  *

consensus_2426#0      AAGCAAGGATCGCCAGATGTTGCAGG--CAATTGTACATAATCCACCA-GGAGAATCACC 237
consensus_2426#1      T--CGGAAATCACAGGTTGCTATTGCTTCTGCTGCTAGCAGTCAGGAAAGGGGAAAAACT 219
                         *    *** *  * ** *   *   *   **     * **    * ** ***  ** 

consensus_2426#0      ATCATCTTCTGCCTCATACATTGATAATTTAAATAACAATGGATTATCTAAGGGCCCTTC 297
consensus_2426#1      GTGGACGATGGTCT--TGCTTCAGTAA---GAACAGTTTTAGATT--TTAA-----CTTC 267
                       *   *    * **  * * *   ***    ** *    * ****   ***     ****

consensus_2426#0      AAGCAAGGATGCTAATTCGCCCCAAGTTACCGGGAACAATTTGTTACTAGCTGCTCGCAA 357
consensus_2426#1      AAC----AATGTCAAT-------GAGCTACTGAGACTTGTCCGGCTTTCTATGGAGTTAA 316
                      **      ***  ***        ** *** * **    *  *    *   **     **

consensus_2426#0      TCAACCACACTTGACAAGGTTACTAGCCTATACAAATGATGTCAACTGTGCCTTCGATGC 417
consensus_2426#1      TCAA---CACCTGATATGTTCAGAATTGCATG-AAATGGCACCCCATGAATAGCTATTGT 372
                      ****   *** *** * * * *  *    **  *****    *   **         ** 

consensus_2426#0      AACTCGGAAATCACAGATGGCAATTGCTTCGGCTGCTAGCAACCAAGAAAATGGAATAG 476
consensus_2426#1      T-----GGAATGCCTGGCTGCAGTTACCTCAGCA------------------------- 401
                            * ***  * *   *** ** * ** **