These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [AAGCATTGATGGCTTTAAACAATGTGATGCAGCTCACAACTTGTATTCCGATACCGCAAAACTCTGCAACTTTGTTGGTCATGCATATGAGAAGTCCAAGAAAATGGCCGCTGCTGCTTTAGCATACAAGTGTGTCGAAGTAGCCTATCTCGAGGCTGCATACTATAAATACCCTACTGCAAGCAAGGATCGCCAGATGTTGCAGGCAATTGTACATAATCCACCAGGAGAATCACCATCATCTTCTGCCTCATACATTGATAATTTAAATAACAATGGATTATCTAAGGGCCCTTCAAGCAAGGATGCTAATTCGCCCCAAGTTACCGGGAACAATTTGTTACTAGCTGCTCGCAATCAACCACACTTGACAAGGTTACTAGCCTATACAAATGATGTCAACTGTGCCTTCGATGCAACTCGGAAATCACAGATGGCAATTGCTTCGGCTGCTAGCAACCAAGAAAATGGAATAG] [+] EMBL CB664026 [AAGCATTGATGGCTTTAAACAATGTGATGCAGCTCACAACTTGTATTCCGATACCGCAAAACTCTGCAACTTTGTTGGTCATGCATATGAGAAGTCCAAGAAAATGGCCGCTGCTGCTTTAGCATACAAGTGTGTCGAAGTAGCCTATCTCGAGGCTGCATACTATAAATACCCTACTGCAAGCAAGGATCGCCAGATGTTGCAGGCAATTGTACATAATCCACCAGGAGAATCACCATCATCTTCTGCCTCATACATTGATAATTTAAATAACAATGGATTATCTAAGGGCCCTTCAAGCAAGGATGCTAATTCGCCCCAAGTTACCGGGAACAATTTGTTACTAGCTGCTCGCAATCAACCACACTTGACAAGGTTACTAGCCTATACAAATGATGTCAACTGTGCCTTCGATGCAACTCGGAAATCACAGATGGCAATTGCTTCGGCTGCTAGCAACCAAGAAAATGGAATAG] consensusID : consensus_2426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [GATAATTTAAATAGCCATGGATTGTCAAAGGCCCTTTCAACCAAGGGTGGAAACTCACCCCAAGTGGCTGGCAACCATTTGCCACTGGCCGTTCGTAACCAAGCACACTTATTGAGGTTACTTGCCTATACAAATGATGTCAATTGTGCATTCGATGCAACTCGGAAATCACAGGTTGCTATTGCTTCTGCTGCTAGCAGTCAGGAAAGGGGAAAAACTGTGGACGATGGTCTTGCTTCAGTAAGAACAGTTTTAGATTTTAACTTCAACAATGTCAATGAGCTACTGAGACTTGTCCGGCTTTCTATGGAGTTAATCAACACCTGATATGTTCAGAATTGCATGAAATGGCACCCCATGAATAGCTATTGTTGGAATGCCTGGCTGCAGTTACCTCAGCA] [+] EMBL CF304041 [GATAATTTAAATAGCCATGGATTGTCAAAGGCCCTTTCAACCAAGGGTGGAAACTCACCCCAAGTGGCTGGCAACCATTTGCCACTGGCCGTTCGTAACCAAGCACACTTATTGAGGTTACTTGCCTATACAAATGATGTCAATTGTGCATTCGATGCAACTCGGAAATCACAGGTTGCTATTGCTTCTGCTGCTAGCAGTCAGGAAAGGGGAAAAACTGTGGACGATGGTCTTGCTTCAGTAAGAACAGTTTTAGATTTTAACTTCAACAATGTCAATGAGCTACTGAGACTTGTCCGGCTTTCTATGGAGTTAATCAACACCTGATATGTTCAGAATTGCATGAAATGGCACCCCATGAATAGCTATTGTTGGAATGCCTGGCTGCAGTTACCTCAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2426#0 AAGCATTGATGGCTTTAAACAATGTGATGCAGCTCACAACTTGTATTCCGATACCGCAAA 60 consensus_2426#1 -------GATAATTTAAATAGCCATGGATTGTCAAAGGCCCTTTCAACCAAGGGTGGAAA 53 *** ** ** ** * * * * * ** * * *** consensus_2426#0 ACTCTGCAACTTTGTTGGTCATGCATATGAGAAGTCCAAGAAAATGGCCGCTGCTGCTTT 120 consensus_2426#1 CTCACCCCAAGTGGCTGG-CAACCATTTG------CCAC-----TGGCCGTTCGTAACCA 101 * * * * *** ** *** ** *** ****** * * consensus_2426#0 AGCATACAAGTGTGTCGAAGTAGCCTATCTCGAGGCTGCATACTATAAATACCCTACTGC 180 consensus_2426#1 AGCACACTTATTGAGGTTACTTGCCTATACAAATGATGTCAATTGTGCATTCGATGCAAC 161 **** ** * * * ****** * * ** * * * ** * * * * consensus_2426#0 AAGCAAGGATCGCCAGATGTTGCAGG--CAATTGTACATAATCCACCA-GGAGAATCACC 237 consensus_2426#1 T--CGGAAATCACAGGTTGCTATTGCTTCTGCTGCTAGCAGTCAGGAAAGGGGAAAAACT 219 * *** * * ** * * * ** * ** * ** *** ** consensus_2426#0 ATCATCTTCTGCCTCATACATTGATAATTTAAATAACAATGGATTATCTAAGGGCCCTTC 297 consensus_2426#1 GTGGACGATGGTCT--TGCTTCAGTAA---GAACAGTTTTAGATT--TTAA-----CTTC 267 * * * ** * * * *** ** * * **** *** **** consensus_2426#0 AAGCAAGGATGCTAATTCGCCCCAAGTTACCGGGAACAATTTGTTACTAGCTGCTCGCAA 357 consensus_2426#1 AAC----AATGTCAAT-------GAGCTACTGAGACTTGTCCGGCTTTCTATGGAGTTAA 316 ** *** *** ** *** * ** * * * ** ** consensus_2426#0 TCAACCACACTTGACAAGGTTACTAGCCTATACAAATGATGTCAACTGTGCCTTCGATGC 417 consensus_2426#1 TCAA---CACCTGATATGTTCAGAATTGCATG-AAATGGCACCCCATGAATAGCTATTGT 372 **** *** *** * * * * * ** ***** * ** ** consensus_2426#0 AACTCGGAAATCACAGATGGCAATTGCTTCGGCTGCTAGCAACCAAGAAAATGGAATAG 476 consensus_2426#1 T-----GGAATGCCTGGCTGCAGTTACCTCAGCA------------------------- 401 * *** * * *** ** * ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||