These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1043 fasta sequence [CATCTCTTCCCCGTTCCCACTTCGCCGGAGCACCACCGCGGCCACGGCGCGCGACGCGAGCACCCACCCCGCCGCCGCCGGCGGCTGACCAACTTCCTCCTCGCCGCCTCCCAATCATCTCGAGATTTTAACTGAACTCCTCTCTTGAACTTCACGAGTTTTTGTTCAACAAAGAACAATGGAAGGCCGGTCCCAGTTGAATCCAGATGCCAGTCCTTTCATACCTTCCTCACTAAGTCTTTTCACATACAATGATTCTAAGAGACAAGCAGAGTCATCCTCGATGAACGATCCTTCTGCTAGAGCTTGCCGTCCTTCCATGTGCGAGGAAAATGATATGGATCCACTTGCTTTGACCAAATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGCAAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATATGCTTCATGGTGATGCCATAATGGGCTTCCCAACATTCCCAGATGTGAAGAAATTTCACGGCAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCTTCAGAAGGGTATGTCACTGACGACTTCTGGTGCGAAATCTGCCTCGGCAATGATTCCAGATAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTCTACCACAAATTAATCTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTTTGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTGTCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTGAGCTTTTGAAAGTGTGCATCGCAGTTTCAGTTTGCTTGTTAGTTGTTACCGAGAGTTGTATAGGTCTTTTGATGTATTCGTCAGTCACTATTATGTACTCTGAACCCAGTGGATTGTGCAGCAGCGGCAGCTCTCGTGTACCCCCTGCGAGTGCTACC] [+] EMBL AK060142 [CATCTCTTCCCCGTTCCCACTTCGCCGGAGCACCACCGCGGCCACGGCGCGCGACGCGAGCACCCACCCCGCCGCCGCCGGCGGCTGACCAACTTCCTCCTCGCCGCCTCCCAATCATCTCGAGATTTTAACTGAACTCCTCTCTTGAACTTCACGAGTTTTTGTTCAACAAAGAACAATGGAAGGCCGGTCCCAGTTGAATCCAGATGCCAGTCCTTTCATACCTTCCTCACTAAGTCTTTTCACATACAATGATTCTAAGAGACAAGCAGAGTCATCCTCGATGAACGATCCTTCTGCTAGAGCTTGCCGTCCTTCCATGTGCGAGGAAAATGATATGGATCCACTTGCTTTGACCAAATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGCAAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATATGCTTCATGGTGATGCCATAATGGGCTTCCCAACATTCCCAGATGTGAAGAAATTTCACGGCAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCTTCAGAAGGGTATGTCACTGACGACTTCTGGTGCGAAATCTGCCTCGGCAATGATTCCAGATAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTCTACCACAAATTAATCTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTTTGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTGTCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTGAGCTTTTGAAAGTGTGCATCGCAGTTTCAGTTTGCTTGTTAGTTGTTACCGAGAGTTGTATAGGTCTTTTGATGTATTCGTCAGTCACTATTATGTACTCTGAACCCAGTGGATTGTGCAGCAGCGGCAGCTCTCGTGTACCCCCTGCGAGTGCTACC] consensusID : consensus_243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [AGGGGGACCAAATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGCAAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATATGCTTCATGGTGATGCCATAATGGGCTTCCCACCATTCCCAGATGTGAAGAAATTTCACGGCAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCTTCAGAAGGGTATGTCACTGACGACTTTTGGTGCGAAATCTGCCTCGGCAATGATTCCAGATAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTTTACCACAAATTAATTTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTTTGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTGTCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTAAAAAAAAAAAAAAA] [-] EMBL CA760631 [AGGGGGACCAAATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGCAAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATATGCTTCATGGTGATGCCATAATGGGCTTCCCACCATTCCCAGATGTGAAGAAATTTCACGGCAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCTTCAGAAGGGTATGTCACTGACGACTTTTGGTGCGAAATCTGCCTCGGCAATGATTCCAGATAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTTTACCACAAATTAATTTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTTTGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTGTCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_243#0 CATCTCTTCCCCGTTCCCACTTCGCCGGAGCACCACCGCGGCCACGGCGCGCGACGCGAG 60 consensus_243#1 ------------------------------------------------------------ consensus_243#0 CACCCACCCCGCCGCCGCCGGCGGCTGACCAACTTCCTCCTCGCCGCCTCCCAATCATCT 120 consensus_243#1 ------------------------------------------------------------ consensus_243#0 CGAGATTTTAACTGAACTCCTCTCTTGAACTTCACGAGTTTTTGTTCAACAAAGAACAAT 180 consensus_243#1 ------------------------------------------------------------ consensus_243#0 GGAAGGCCGGTCCCAGTTGAATCCAGATGCCAGTCCTTTCATACCTTCCTCACTAAGTCT 240 consensus_243#1 ------------------------------------------------------------ consensus_243#0 TTTCACATACAATGATTCTAAGAGACAAGCAGAGTCATCCTCGATGAACGATCCTTCTGC 300 consensus_243#1 ------------------------------------------------------------ consensus_243#0 TAGAGCTTGCCGTCCTTCCATGTGCGAGGAAAATGATATGGATCCACTTGCTTTGACCAA 360 consensus_243#1 -------------------------------------------------AGGGGGACCAA 11 ****** consensus_243#0 ATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGC 420 consensus_243#1 ATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGC 71 ************************************************************ consensus_243#0 AAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATAT 480 consensus_243#1 AAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATAT 131 ************************************************************ consensus_243#0 GCTTCATGGTGATGCCATAATGGGCTTCCCAACATTCCCAGATGTGAAGAAATTTCACGG 540 consensus_243#1 GCTTCATGGTGATGCCATAATGGGCTTCCCACCATTCCCAGATGTGAAGAAATTTCACGG 191 ******************************* **************************** consensus_243#0 CAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCT 600 consensus_243#1 CAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCT 251 ************************************************************ consensus_243#0 TCAGAAGGGTATGTCACTGACGACTTCTGGTGCGAAATCTGCCTCGGCAATGATTCCAGA 660 consensus_243#1 TCAGAAGGGTATGTCACTGACGACTTTTGGTGCGAAATCTGCCTCGGCAATGATTCCAGA 311 ************************** ********************************* consensus_243#0 TAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTC 720 consensus_243#1 TAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTT 371 *********************************************************** consensus_243#0 TACCACAAATTAATCTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTT 780 consensus_243#1 TACCACAAATTAATTTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTT 431 ************** ********************************************* consensus_243#0 TGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTG 840 consensus_243#1 TGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTG 491 ************************************************************ consensus_243#0 TCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTGAGCTTTTGAAAGTGT 900 consensus_243#1 TCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTAAAAAAAAAAAAAAA- 550 ******************************************** * *** consensus_243#0 GCATCGCAGTTTCAGTTTGCTTGTTAGTTGTTACCGAGAGTTGTATAGGTCTTTTGATGT 960 consensus_243#1 ------------------------------------------------------------ consensus_243#0 ATTCGTCAGTCACTATTATGTACTCTGAACCCAGTGGATTGTGCAGCAGCGGCAGCTCTC 1020 consensus_243#1 ------------------------------------------------------------ consensus_243#0 GTGTACCCCCTGCGAGTGCTACC 1043 consensus_243#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||