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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1180 fasta sequence
[AATCTCTCTCTACTCTATCTCTTCCTCAATCCCCATCCCCCTCTCACTCTCTCTCCTCCCTCGCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACGGCAGCGTGCCCTCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGCATGGCGTGAGAGCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGGTGGCTGCCCAGCAAGGTGCGCACAGTGGCACAGCCTCTCTCCTTCCTCCCCTAGCTGCAGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGTGGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGAGCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCGACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCGTCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGCTCGACCTGGACCCGCGCTTGCCCCACGTGAGAGAGAGAGAGAGAGAGAGAGAGGGAAGAGGGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCCACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGATAATTCGTACTTTTCCAACTAGATACGATCCATCGGATTAAAGGAAAAAAAAGGGTACTAATACCTCTTTTGAAATGGACATTCACAGTGATATAATATATGTATATATATAAAACATTCCTCATAAATAAGTTACGTACTTGATGTATTGGTATATCCTGTAGGTGATCTCATAATCAACTGCGACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTTGTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTAGTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCACGCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGCAATCCA]
[+] EMBL AK067465 [AATCTCTCTCTACTCTATCTCTTCCTCAATCCCCATCCCCCTCTCACTCTCTCTCCTCCCTCGCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACGGCAGCGTGCCCTCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGCATGGCGTGAGAGCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGGTGGCTGCCCAGCAAGGTGCGCACAGTGGCACAGCCTCTCTCCTTCCTCCCCTAGCTGCAGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGTGGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGAGCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCGACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCGTCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGCTCGACCTGGACCCGCGCTTGCCCCACGTGAGAGAGAGAGAGAGAGAGAGAGAGGGAAGAGGGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCCACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGATAATTCGTACTTTTCCAACTAGATACGATCCATCGGATTAAAGGAAAAAAAAGGGTACTAATACCTCTTTTGAAATGGACATTCACAGTGATATAATATATGTATATATATAAAACATTCCTCATAAATAAGTTACGTACTTGATGTATTGGTATATCCTGTAGGTGATCTCATAATCAACTGCGACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTTGTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTAGTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCACGCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGCAATCCA]
consensusID : consensus_2430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1020 fasta sequence
[CCCTCGCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACGGCAGCGTGCCCTCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGCATGGCGTGAGAGCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGGTGGCTGCCCAGCAAGGTGCGCACAGTGGCACAGCCTCTCTCTTTTCCCTCCCATTGCTGCAGCGAGCGCCGGCGGCCGGCCGGCAAGGCGTGCACGGCGGCACACCCTCTCTCTCCTTCCTCCCCTAGCTGCAGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGTGGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGAGCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCGACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCGTCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGCTCGACCTGGACCCGCGCTTGCCCCCACGTGAGAGAGAGAGAGAGAGAGAGGGAAGAGGGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCCACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGATCTCATAATCAACTGCGACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTTGTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTAGTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCACGCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGC]
[+] EMBL AK106103 [CCCTCGCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACGGCAGCGTGCCCTCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGCATGGCGTGAGAGCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGGTGGCTGCCCAGCAAGGTGCGCACAGTGGCACAGCCTCTCTCTTTTCCCTCCCATTGCTGCAGCGAGCGCCGGCGGCCGGCCGGCAAGGCGTGCACGGCGGCACACCCTCTCTCTCCTTCCTCCCCTAGCTGCAGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGTGGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGAGCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCGACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCGTCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGCTCGACCTGGACCCGCGCTTGCCCCCACGTGAGAGAGAGAGAGAGAGAGAGGGAAGAGGGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCCACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGATCTCATAATCAACTGCGACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTTGTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTAGTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCACGCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2430#0 -----------AATCTCTCTCTACTCTATCTCTTCCTCAATCCCCATCCCC--CTCTCAC 47
consensus_2430#1 CCCTCGCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACGGCAGCGTGCCC 60
* * ** * * *** * * * * * * *
consensus_2430#0 TCTCTCTCCTCCCTC-GCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACG 106
consensus_2430#1 TCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGCATGGCGTGAGA 120
*************** *** ****** ******* ** ** * **** *** **
consensus_2430#0 GCAGCGTGCCCTCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGC 166
consensus_2430#1 GCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGGTGGCTGCCCAGC 180
** *** ******************** * * *********** **** *** * * **
consensus_2430#0 ATGGCGTG-AGAGCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGG 225
consensus_2430#1 AAGGTGCGCACAGTGGCACAGCCTCTCTCTTTTCCCTCCCATTGCTGCAGCGAGCGCCGG 240
* ** * * * ** *** * ********* ******** * ****** **** ***
consensus_2430#0 TGGCTGCCCAGCAAGGTGCGCACAGTGGCACAGCCTCTCTC--CTTCCTCCCCTAGCTGC 283
consensus_2430#1 CGGCCGGCCGGCAAGGCGTGCACGGCGGCACACCCTCTCTCTCCTTCCTCCCCTAGCTGC 300
*** * ** ****** * **** * ****** ******** *****************
consensus_2430#0 AGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGT 343
consensus_2430#1 AGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGT 360
************************************************************
consensus_2430#0 GGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGA 403
consensus_2430#1 GGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGA 420
************************************************************
consensus_2430#0 GCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCG 463
consensus_2430#1 GCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCG 480
************************************************************
consensus_2430#0 ACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCG 523
consensus_2430#1 ACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCG 540
************************************************************
consensus_2430#0 TCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGC 583
consensus_2430#1 TCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGC 600
************************************************************
consensus_2430#0 TCGACCTGGACCCGCGCTTGCCCCACGTGAGAGAGAGAGAGAGAGAGAGAGAGGGAAGAG 643
consensus_2430#1 TCGACCTGGACCCGCGCTTGCCCC---CACGTGAGAGAGAGAGAGAGAGAGAGGGAAGAG 657
************************ * ****************************
consensus_2430#0 GGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCC 703
consensus_2430#1 GGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCC 717
************************************************************
consensus_2430#0 ACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGATAAT 763
consensus_2430#1 ACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGAT--- 774
*********************************************************
consensus_2430#0 TCGTACTTTTCCAACTAGATACGATCCATCGGATTAAAGGAAAAAAAAGGGTACTAATAC 823
consensus_2430#1 ------------------------------------------------------------
consensus_2430#0 CTCTTTTGAAATGGACATTCACAGTGATATAATATATGTATATATATAAAACATTCCTCA 883
consensus_2430#1 ------------------------------------------------------------
consensus_2430#0 TAAATAAGTTACGTACTTGATGTATTGGTATATCCTGTAGGTGATCTCATAATCAACTGC 943
consensus_2430#1 ---------------------------------------------CTCATAATCAACTGC 789
***************
consensus_2430#0 GACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTT 1003
consensus_2430#1 GACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTT 849
************************************************************
consensus_2430#0 GTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTA 1063
consensus_2430#1 GTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTA 909
************************************************************
consensus_2430#0 GTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCAC 1123
consensus_2430#1 GTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCAC 969
************************************************************
consensus_2430#0 GCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGCAATCCA 1180
consensus_2430#1 GCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGC------ 1020
***************************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||