These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [TGTCTCCGGAAGCCACCCTGAAGAACGGNTGCGCCGCGCCGTCGCTCGGGGAATTCCNCGAGATGGAGAGGAGAGNAAGCAGCAGCTCGTTGTAGCCTATGATCTCATATTCTCATGGGGAACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGTATTTCGAATCCTCNCATTTTCCANANAACCCGGGTCATTGTCGAATCTTTCATNAATCNTCANANTGAACTCTGCTACGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAAA] [+] EMBL AU058065 [TGTCTCCGGAAGCCACCCTGAAGAACGGNTGCGCCGCGCCGTCGCTCGGGGAATTCCNCGAGATGGAGAGGAGAGNAAGCAGCAGCTCGTTGTAGCCTATGATCTCATATTCTCATGGGGAACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGTATTTCGAATCCTCNCATTTTCCANANAACCCGGGTCATTGTCGAATCTTTCATNAATCNTCANANTGAACTCTGCTACGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAAA] consensusID : consensus_2438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [GCCTCCGNAGCCACCTGNAGAAACGGCCGCGCCGCGCCGTCGCTCGGGCAATTCCTCGAGATGGAGAGGAGAGCAAGCAGCAGCTCGTTGTAGCTTATGATCTCATATTCTCATGGGGAACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGCATTTCGATTCTTCTCATTTTCCAGAGAACCCGGGTCATTGTCGAATCTTTCATGATTCTTCACATTGATCTCTGCTACGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAAA] [+] EMBL C99566 [GCCTCCGNAGCCACCTGNAGAAACGGCCGCGCCGCGCCGTCGCTCGGGCAATTCCTCGAGATGGAGAGGAGAGCAAGCAGCAGCTCGTTGTAGCTTATGATCTCATATTCTCATGGGGAACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGCATTTCGATTCTTCTCATTTTCCAGAGAACCCGGGTCATTGTCGAATCTTTCATGATTCTTCACATTGATCTCTGCTACGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2438#0 TGTCTCCGGAAGCCACCCTGAAGAACGGNTGCGCCGCGCCGTCGCTCGGGGAATTCCNCG 60 consensus_2438#1 -GCCTCCGNA-GCCACCTGNAGAAACGGCCGCGCCGCGCCGTCGCTCGGGCAATTCCTCG 58 * ***** * ****** * ***** ******************** ****** ** consensus_2438#0 AGATGGAGAGGAGAGNAAGCAGCAGCTCGTTGTAGCCTATGATCTCATATTCTCATGGGG 120 consensus_2438#1 AGATGGAGAGGAGAGCAAGCAGCAGCTCGTTGTAGCTTATGATCTCATATTCTCATGGGG 118 *************** ******************** *********************** consensus_2438#0 AACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGTATTTCGAATCCTCNCAT 180 consensus_2438#1 AACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGCATTTCGATTCTTCTCAT 178 ****************************************** ******* ** ** *** consensus_2438#0 TTTCCANANAACCCGGGTCATTGTCGAATCTTTCATNAATCNTCANANTGAACTCTGCTA 240 consensus_2438#1 TTTCCAGAGAACCCGGGTCATTGTCGAATCTTTCATGATTCTTCACATTGATCTCTGCTA 238 ****** * *************************** * ** *** * *** ******** consensus_2438#0 CGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAA 300 consensus_2438#1 CGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAA 298 ************************************************************ consensus_2438#0 A 301 consensus_2438#1 A 299 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||