cluster # 2442

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Oryza sativa
cluster # 2442 cluster # 2442 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2442#0 length = 568 sequences # 1

consensus_2442#1 length = 139 sequences # 1

consensusID : consensus_2442#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [CGGCAATACTAACTTGGGCATAAAGAGGGTAATACTAACTTGTGCATAAAGAGCATAATATTGTTGGAGCCTTGGAGGACCAAATTATGTTCCTGCGACTGGAATTCCTAAATAATGAAGTCGCTGGGTGCAAAAAACATACATCTAATTTCTCATGCAGCAGTTTGACTACGGCATTCAAAATTTCAAAATTTCAAATACAATACGTCAAAAACTACAGTTAGCAGGTTATGAGGAGACATCCAGTTGGGATTTTCCTCCCCAGCTTCCTTTCCCGCGAAAGAAAAATTGCTGTCCCTCCCCCTTATTTGCCNCCGGGNGTTTAAACAAAAAGGGACGGGTTTTTTTAAACCCAACNCNTTGCAATAAAAANTAAAAAACATNNTTCNCCCCCTTAANTCNNGGGCCCCCCNTGGGCNAAAAATTTCCTTNNATTTCCCCCCNAAAAAATNGNGNTTTTTTGAGGCNAACCCCCCCTTTTTTCCCCCAAAATNCCCCCTTTGNCCNCAAAANCCNCCCCCNGGGAACCCCNCCAANAAANCAACCCCCTTCACCCCCCANATNNGGG]

[+] EMBL BE229069             [CGGCAATACTAACTTGGGCATAAAGAGGGTAATACTAACTTGTGCATAAAGAGCATAATATTGTTGGAGCCTTGGAGGACCAAATTATGTTCCTGCGACTGGAATTCCTAAATAATGAAGTCGCTGGGTGCAAAAAACATACATCTAATTTCTCATGCAGCAGTTTGACTACGGCATTCAAAATTTCAAAATTTCAAATACAATACGTCAAAAACTACAGTTAGCAGGTTATGAGGAGACATCCAGTTGGGATTTTCCTCCCCAGCTTCCTTTCCCGCGAAAGAAAAATTGCTGTCCCTCCCCCTTATTTGCCNCCGGGNGTTTAAACAAAAAGGGACGGGTTTTTTTAAACCCAACNCNTTGCAATAAAAANTAAAAAACATNNTTCNCCCCCTTAANTCNNGGGCCCCCCNTGGGCNAAAAATTTCCTTNNATTTCCCCCCNAAAAAATNGNGNTTTTTTGAGGCNAACCCCCCCTTTTTTCCCCCAAAATNCCCCCTTTGNCCNCAAAANCCNCCCCCNGGGAACCCCNCCAANAAANCAACCCCCTTCACCCCCCANATNNGGG]




>consensus_2442#0
CGGCAATACTAACTTGGGCATAAAGAGGGTAATACTAACTTGTGCATAAAGAGCATAATA
TTGTTGGAGCCTTGGAGGACCAAATTATGTTCCTGCGACTGGAATTCCTAAATAATGAAG
TCGCTGGGTGCAAAAAACATACATCTAATTTCTCATGCAGCAGTTTGACTACGGCATTCA
AAATTTCAAAATTTCAAATACAATACGTCAAAAACTACAGTTAGCAGGTTATGAGGAGAC
ATCCAGTTGGGATTTTCCTCCCCAGCTTCCTTTCCCGCGAAAGAAAAATTGCTGTCCCTC
CCCCTTATTTGCCNCCGGGNGTTTAAACAAAAAGGGACGGGTTTTTTTAAACCCAACNCN
TTGCAATAAAAANTAAAAAACATNNTTCNCCCCCTTAANTCNNGGGCCCCCCNTGGGCNA
AAAATTTCCTTNNATTTCCCCCCNAAAAAATNGNGNTTTTTTGAGGCNAACCCCCCCTTT
TTTCCCCCAAAATNCCCCCTTTGNCCNCAAAANCCNCCCCCNGGGAACCCCNCCAANAAA
NCAACCCCCTTCACCCCCCANATNNGGG

consensusID : consensus_2442#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 139
fasta sequence

                              [AAAAGCGGCAATACTAACTGTGGGCATAAAGAGGGTAATACTAACTTGGTGCATAAANGAGCATAATATGGTGTGGAGCCTTGTGAGGACCAGTATTATGTACCTGGCGACGTGGAATTCCTAGAATAGATAGAAGTCG]

[+] EMBL CB967097             [AAAAGCGGCAATACTAACTGTGGGCATAAAGAGGGTAATACTAACTTGGTGCATAAANGAGCATAATATGGTGTGGAGCCTTGTGAGGACCAGTATTATGTACCTGGCGACGTGGAATTCCTAGAATAGATAGAAGTCG]




>consensus_2442#1
AAAAGCGGCAATACTAACTGTGGGCATAAAGAGGGTAATACTAACTTGGTGCATAAANGA
GCATAATATGGTGTGGAGCCTTGTGAGGACCAGTATTATGTACCTGGCGACGTGGAATTC
CTAGAATAGATAGAAGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2442#0      -----CGGCAATACTAACT-TGGGCATAAAGAGGGTAATACTAACTTG-TGCATAAAG-A 52
consensus_2442#1      AAAAGCGGCAATACTAACTGTGGGCATAAAGAGGGTAATACTAACTTGGTGCATAAANGA 60
                           ************** **************************** ********  *

consensus_2442#0      GCATAATATTGT-TGGAGCCTTG-GAGGACCAA-ATTATGTTCCTG-CGAC-TGGAATTC 107
consensus_2442#1      GCATAATATGGTGTGGAGCCTTGTGAGGACCAGTATTATGTACCTGGCGACGTGGAATTC 120
                      ********* ** ********** ********  ******* **** **** ********

consensus_2442#0      CTAAATAATGAAGTCGCTGGGTGCAAAAAACATACATCTAATTTCTCATGCAGCAGTTTG 167
consensus_2442#1      CTAGAATAGATAGAAGTCG----------------------------------------- 139
                      *** *  *   **  *  *                                         

consensus_2442#0      ACTACGGCATTCAAAATTTCAAAATTTCAAATACAATACGTCAAAAACTACAGTTAGCAG 227
consensus_2442#1      ------------------------------------------------------------
                                                                                  

consensus_2442#0      GTTATGAGGAGACATCCAGTTGGGATTTTCCTCCCCAGCTTCCTTTCCCGCGAAAGAAAA 287
consensus_2442#1      ------------------------------------------------------------
                                                                                  

consensus_2442#0      ATTGCTGTCCCTCCCCCTTATTTGCCNCCGGGNGTTTAAACAAAAAGGGACGGGTTTTTT 347
consensus_2442#1      ------------------------------------------------------------
                                                                                  

consensus_2442#0      TAAACCCAACNCNTTGCAATAAAAANTAAAAAACATNNTTCNCCCCCTTAANTCNNGGGC 407
consensus_2442#1      ------------------------------------------------------------
                                                                                  

consensus_2442#0      CCCCCNTGGGCNAAAAATTTCCTTNNATTTCCCCCCNAAAAAATNGNGNTTTTTTGAGGC 467
consensus_2442#1      ------------------------------------------------------------
                                                                                  

consensus_2442#0      NAACCCCCCCTTTTTTCCCCCAAAATNCCCCCTTTGNCCNCAAAANCCNCCCCCNGGGAA 527
consensus_2442#1      ------------------------------------------------------------
                                                                                  

consensus_2442#0      CCCCNCCAANAAANCAACCCCCTTCACCCCCCANATNNGGG 568
consensus_2442#1      -----------------------------------------