cluster # 2453

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Oryza sativa
cluster # 2453 cluster # 2453 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2453#0 length = 339 sequences # 1

consensus_2453#1 length = 222 sequences # 1

consensusID : consensus_2453#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [CGGTACGCCCCGCCCGCTCGTGCCCTCGCACAGCCCGTGGAAGGGTTTTCCCAAAAATCGTCCTCCAAAATCGCGGCAACAAATCAACGAATCGACAGCAGCCGTCCTCCTGCTTCTCNTCCTCTTCCTTGCGGCGGCGGCGGCGGCGGCTGTCGCACGAGCAGGTGGCAGCCGGTGCCGCGCGGCTCCTCCGCGGGGTCCGGAGGCGTGGAAGGAGCAAGCGGCGTGGGCGGCGCGGCTCCTCCGGAGGCCGTCGTCGAAGAAGAGAGCGCCACCTCGCCAATGCANGCACCCCAACCCGGTGCTCACCTCGNCTGCTTCTTCCTCACCGCCCGTTCT]

[+] EMBL AU075999             [CGGTACGCCCCGCCCGCTCGTGCCCTCGCACAGCCCGTGGAAGGGTTTTCCCAAAAATCGTCCTCCAAAATCGCGGCAACAAATCAACGAATCGACAGCAGCCGTCCTCCTGCTTCTCNTCCTCTTCCTTGCGGCGGCGGCGGCGGCGGCTGTCGCACGAGCAGGTGGCAGCCGGTGCCGCGCGGCTCCTCCGCGGGGTCCGGAGGCGTGGAAGGAGCAAGCGGCGTGGGCGGCGCGGCTCCTCCGGAGGCCGTCGTCGAAGAAGAGAGCGCCACCTCGCCAATGCANGCACCCCAACCCGGTGCTCACCTCGNCTGCTTCTTCCTCACCGCCCGTTCT]




>consensus_2453#0
CGGTACGCCCCGCCCGCTCGTGCCCTCGCACAGCCCGTGGAAGGGTTTTCCCAAAAATCG
TCCTCCAAAATCGCGGCAACAAATCAACGAATCGACAGCAGCCGTCCTCCTGCTTCTCNT
CCTCTTCCTTGCGGCGGCGGCGGCGGCGGCTGTCGCACGAGCAGGTGGCAGCCGGTGCCG
CGCGGCTCCTCCGCGGGGTCCGGAGGCGTGGAAGGAGCAAGCGGCGTGGGCGGCGCGGCT
CCTCCGGAGGCCGTCGTCGAAGAAGAGAGCGCCACCTCGCCAATGCANGCACCCCAACCC
GGTGCTCACCTCGNCTGCTTCTTCCTCACCGCCCGTTCT

consensusID : consensus_2453#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [GCCGCTATTTGTTGCCGCGATTTTGGAGGACNATTTTTGGGAAAACCCTTCCACNGGCTNTGCNAGGGCACNANCGGGCGGGGCGACCCGCTCCACAGCGTATAAAATCCGCANTTTCCTCGCCTCGCNTGGGCTCGCGGCAGGGANGAATCNCCCTTCCCTGCGTGGGANCNANGTCTCTGCTGGGGCGCGGACCCTTATCNCCACNCAANCCCTAATCCN]

[+] EMBL AU225298             [GCCGCTATTTGTTGCCGCGATTTTGGAGGACNATTTTTGGGAAAACCCTTCCACNGGCTNTGCNAGGGCACNANCGGGCGGGGCGACCCGCTCCACAGCGTATAAAATCCGCANTTTCCTCGCCTCGCNTGGGCTCGCGGCAGGGANGAATCNCCCTTCCCTGCGTGGGANCNANGTCTCTGCTGGGGCGCGGACCCTTATCNCCACNCAANCCCTAATCCN]




>consensus_2453#1
GCCGCTATTTGTTGCCGCGATTTTGGAGGACNATTTTTGGGAAAACCCTTCCACNGGCTN
TGCNAGGGCACNANCGGGCGGGGCGACCCGCTCCACAGCGTATAAAATCCGCANTTTCCT
CGCCTCGCNTGGGCTCGCGGCAGGGANGAATCNCCCTTCCCTGCGTGGGANCNANGTCTC
TGCTGGGGCGCGGACCCTTATCNCCACNCAANCCCTAATCCN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2453#0      CGGTACGCCCCGCCCGCTCGTGCCCTCGCACAGCCCGTGGAAGGGTTTTCCCAAAAATCG 60
consensus_2453#1      --------------------------------------------------------GCCG 4
                                                                                **

consensus_2453#0      TCCTCCAAAATCGCGGCAACAAATCAACGAATCGACAGCAGCCGTCCTCCTGCTTCTCNT 120
consensus_2453#1      CTATTTGTTGCCGCGATTTTGGAGGACNATTTTTGGGAAAACCCTTCCACNGGCTNTGCN 64
                         *       ****       *  *     *       * ** * *  * *  * *   

consensus_2453#0      CCTCTTCCTTGCGGCGGCGGCGGCGGCGGCTGTCGCACGAGCAGGTGGCAGCCGGTGCCG 180
consensus_2453#1      AGGGCACNANCGGGCGG----GGCGAC--CCGCTCCAC-AGCGTATAAAATCCG------ 111
                            *     *****    **** *  * *   *** ***   *   * ***      

consensus_2453#0      CGCGGCTCCTCCGCGGGGTCCGGAGGCGTGG-AAGGAGCAAGCGGCGTGGGCGGCGCGGC 239
consensus_2453#1      --CANTTTCCTCGCCTCGCNTGGGCTCGCGGCAGGGANGAATCNCCCTTCCCTGCGTGGG 169
                        *   * *  ***   *   **   ** ** * ***  ** *  * *   * *** ** 

consensus_2453#0      TCCTCCGGAGGCCGTCGTCGAAGAAGAGAGCGCCACCTCGCCAATGCANGCACCCCAACC 299
consensus_2453#1      ANCN----ANGTCTCTGCTG-----GGGCGCGGACCCTTATCNCCACNCAANCCCTAATC 220
                        *     * * *   *  *     * * ***   ***   *    *     *** ** *

consensus_2453#0      CGGTGCTCACCTCGNCTGCTTCTTCCTCACCGCCCGTTCT 339
consensus_2453#1      CN-------------------------------------- 222
                      *