These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence [CTCTCTTTTTCCTTAGGCCCTTCCATTTCAGAGCCAGTCGCCACCTGAGCCGAGCTCTGATTCTTCCATTTCTCTCTGTGACCGAGGGAATCATCTACCAGATTCGGTTTCTTGATGGGAAGCAGTAATCGTGAACCCGTGCCTGCGCGGGGATTCGGTAGCCTCGTGCAGATACCGGATAAGATTCAGAACTCTCTCAAGGTGCATTTTGGGCGTTTCTTGAAGAAGAATGGCTTTGGTGGTGGTTCAGAGGCCGAAATGCTGCCGATGCAAATGCAGGGAACTTGTACTACTGTTGCTCCTGAGGTTAGGTTGGACAAGCAGCTCCAAGCTTGGAAGAACAATCCTATTTGGTCTGATGAACCTCCAGAAATCAAGGTGACTGTGCCACAAGGCTCTCTTTGCAACCTGAATCTGAAATTTAAGGCAGGATTACCTCCAGACGCAGTTTACAACATTATAATTGATCCAGAGAACAAAAGAGTTTTCAAAAACATCAAGGAAGTAATATCACGGAAAGTCGTGCTTGATGAAGGACAAAGGCAAATAGTTGAAGTGGAGCAGGCAGCAATATGGAGATTTCTCTGGTGGTCTGGTGTCTTGTCAGTTCATGTTTTTGTCGACCAGAACAGAACAAATCACACTGTAAAGTTCAAGCAAGGAAGAACAGGTTTTATGAAGAAATTTGAAGGTTGCTGGAAAATAGAGCCTCTATTTGTTGACAAGGAAGCATGCCATCCTTTAGACCCATGCACATTAGAAAAGTATGATTCCTGCACCAATGGCACAGGAAGAGTTGGATCTTCAATTACCTTGG] [+] EMBL CB675894 [CTCTCTTTTTCCTTAGGCCCTTCCATTTCAGAGCCAGTCGCCACCTGAGCCGAGCTCTGATTCTTCCATTTCTCTCTGTGACCGAGGGAATCATCTACCAGATTCGGTTTCTTGATGGGAAGCAGTAATCGTGAACCCGTGCCTGCGCGGGGATTCGGTAGCCTCGTGCAGATACCGGATAAGATTCAGAACTCTCTCAAGGTGCATTTTGGGCGTTTCTTGAAGAAGAATGGCTTTGGTGGTGGTTCAGAGGCCGAAATGCTGCCGATGCAAATGCAGGGAACTTGTACTACTGTTGCTCCTGAGGTTAGGTTGGACAAGCAGCTCCAAGCTTGGAAGAACAATCCTATTTGGTCTGATGAACCTCCAGAAATCAAGGTGACTGTGCCACAAGGCTCTCTTTGCAACCTGAATCTGAAATTTAAGGCAGGATTACCTCCAGACGCAGTTTACAACATTATAATTGATCCAGAGAACAAAAGAGTTTTCAAAAACATCAAGGAAGTAATATCACGGAAAGTCGTGCTTGATGAAGGACAAAGGCAAATAGTTGAAGTGGAGCAGGCAGCAATATGGAGATTTCTCTGGTGGTCTGGTGTCTTGTCAGTTCATGTTTTTGTCGACCAGAACAGAACAAATCACACTGTAAAGTTCAAGCAAGGAAGAACAGGTTTTATGAAGAAATTTGAAGGTTGCTGGAAAATAGAGCCTCTATTTGTTGACAAGGAAGCATGCCATCCTTTAGACCCATGCACATTAGAAAAGTATGATTCCTGCACCAATGGCACAGGAAGAGTTGGATCTTCAATTACCTTGG] consensusID : consensus_2473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [TTTTTTTTTTTTGACATTTTAACTGGGCAATTATTCACCTCATCAATTGTACACAGCTGAACATCCATTTTACATTATTACTGTACGAAAGAGTCGTGTGAAACAGTCCACAAACTAGTCACATGATGTTATTAGCCATCTACAAAATATCAATATGAATACCCTGCAATTCATCAAATTCTACAATGAAAACCACCTACCATTGGAGTACAGGTAAATTGGCCCTAAAATGCATCCTGTCCAGAAGCGAAAATGCCTAGTTTATCCTTGAGCAGTTAATCTAAGGGAGTTTCCATGCCGTCCTGTTTTTCTTCTCTGACGCCATCTTTCCTTAATATCATTGCACTCTTCTGTTAGATGATCTCTACTAGTATCACACTTTCCCTCAACATATTGCTTGTCAATAGCATTATTTGCCAAACCTCGCAGCCGAGCAGTTTCCGCTATCAGATCATTGACCAGCATCTCAGTTGTCCTCGTGGTAATCCCTCTCAGATACCATGAAAACGGAGGCGGGGGTACCATAGCAGGTTCAATAAGCTGATCCAAGGTAATTGAAGATCCAACTCTTCCTGTGCCATTGGTGCAGGAATCATACTTTCCCCTTGTCTCGT] [+] EMBL CA762559 [TTTTTTTTTTTTGACATTTTAACTGGGCAATTATTCACCTCATCAATTGTACACAGCTGAACATCCATTTTACATTATTACTGTACGAAAGAGTCGTGTGAAACAGTCCACAAACTAGTCACATGATGTTATTAGCCATCTACAAAATATCAATATGAATACCCTGCAATTCATCAAATTCTACAATGAAAACCACCTACCATTGGAGTACAGGTAAATTGGCCCTAAAATGCATCCTGTCCAGAAGCGAAAATGCCTAGTTTATCCTTGAGCAGTTAATCTAAGGGAGTTTCCATGCCGTCCTGTTTTTCTTCTCTGACGCCATCTTTCCTTAATATCATTGCACTCTTCTGTTAGATGATCTCTACTAGTATCACACTTTCCCTCAACATATTGCTTGTCAATAGCATTATTTGCCAAACCTCGCAGCCGAGCAGTTTCCGCTATCAGATCATTGACCAGCATCTCAGTTGTCCTCGTGGTAATCCCTCTCAGATACCATGAAAACGGAGGCGGGGGTACCATAGCAGGTTCAATAAGCTGATCCAAGGTAATTGAAGATCCAACTCTTCCTGTGCCATTGGTGCAGGAATCATACTTTCCCCTTGTCTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2473#0 CTCTCTTTTTCCTTAGGCCCTTCCATTTCAGAGCCAGTCGCCACCTGAGCCGAGCTCTGA 60 consensus_2473#1 ---TTTTTTTTTTTTGACATTTTAACTGGGCAATTATTCACCTCATCAATTGTACACAGC 57 * ***** ** * * ** * * * * ** ** * * * * * * * consensus_2473#0 TT--CTTCCATTTCTCTCTGTGACCGAGGGAATCATCTACCAGATTCGGTTTCTTGATGG 118 consensus_2473#1 TGAACATCCATTTTACATTATTACTGTACGAA---------AGAGTCG---------TGT 99 * * ******* * * * ** * *** *** *** ** consensus_2473#0 GAAGCAGTAATCGTGAACCCGTGCCTGCGCGGGGATTCGGTAGCCTCGTGCAGA-TACCG 177 consensus_2473#1 GAAACAGT--CCACAAACTAGT-----CACATGATGTTATTAGCCATCTACAAAATATCA 152 *** **** * *** ** * * * * ***** * ** * ** * consensus_2473#0 G-ATAAG-ATTCAGAACTCTCTCAAGGTGCATTTTGGGCGTTTCTTGAAGAAGAATGGCT 235 consensus_2473#1 ATATGAATACCCTGCAATTCATCAAATTCTACAATGAAAACCACCT-----ACCATTGGA 207 ** * * * * * * **** * * ** * * * ** * consensus_2473#0 TTGGTGGTGGTTCAGAGGCCGAAATGCTGCCGATGCAAATGCAGGGAACTTGTACTACTG 295 consensus_2473#1 GTACAGGTAAATTGGCC-CTAAAATGCATCCTGTCCAGAAGC---GAAAATGCCTAGTTT 263 * *** * * * ****** ** * ** * ** *** ** * consensus_2473#0 TTGCTCCTGAGGTTAGGTTGGACAAGCAGCTCCAAGCTTGGAAGAACAATCCTATTTGGT 355 consensus_2473#1 ATCCTTGAGCAGTTAATCTA---AGGGAGTTTCCATGCCGTCCTGTTTTTCTTCTCTGAC 320 * ** * **** * * * ** * * * * ** * * ** consensus_2473#0 CTGATGAACCTCCAGAAATCAAGGTGACTGTGCCACAAGGCTCTCTTTGC-AACCTGAAT 414 consensus_2473#1 GCCATCTTTCCTTA-ATATCATTGC-ACTCTTCTGTTAGATGATCTCTACTAGTATCACA 378 ** * * * **** * *** * * ** *** * * * * * consensus_2473#0 CTGAAATTTAAGGCAGGATTACCTCCAGACGCAGTTTACAACATTATA-ATTGATCCAGA 473 consensus_2473#1 CTTTCCCTCAACATA---TTGCTT---------GTCAATAGCATTATTTGCCAAACCTCG 426 ** * ** * ** * * ** * * ****** * ** consensus_2473#0 GAACAAAAGAGTTTTCAAAAACAT-CAAGGAAGTAATATCACGGAAAGTCGTGCTTGATG 532 consensus_2473#1 CAGCCGAGCAGTTTCCGCTATCAGATCATTGACCAGCATCTC----AGTTGTCCTCG-TG 481 * * * ***** * * ** * * * *** * *** ** ** * ** consensus_2473#0 AAGGACAAAGGCAAATA--GTTGAAGTGGAGCAGGCAGCAATATGGAGATTTCTCTGG-- 588 consensus_2473#1 GTAATCCCTCTCAGATACCATGAAAACGGAGGCGGGGGTACCATAGCAGGTTCAATAAGC 541 * ** *** * ** **** ** * * ** * *** * consensus_2473#0 TGGTCTGGTGTC-TTGTCAGTTCATGTTTTTGTCGACCAGAACAGAACAAATCACACTGT 647 consensus_2473#1 TGATCCAAGGTAATTGAAGATCCAACTCTTCCTGTGCCATTGGTGCAGGAATCATACTTT 601 ** ** ** *** * ** * ** * *** * * ***** *** * consensus_2473#0 AAAGTTCAAGCAAGGAAGAACAGGTTTTATGAAGAAATTTGAAGGTTGCTGGAAAATAGA 707 consensus_2473#1 CCCCTTGTCTCGT----------------------------------------------- 614 ** * consensus_2473#0 GCCTCTATTTGTTGACAAGGAAGCATGCCATCCTTTAGACCCATGCACATTAGAAAAGTA 767 consensus_2473#1 ------------------------------------------------------------ consensus_2473#0 TGATTCCTGCACCAATGGCACAGGAAGAGTTGGATCTTCAATTACCTTGG 817 consensus_2473#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||