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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1366 fasta sequence
[CGACAAATTGTTCAGCTCGGACGTTCCTGGCTTGTTCATTCTGCTTGCCCTGCATTGCACAGTACAGCAACCATACGATTCCGTAACTTCGTAAGATAAAACCAACGAAAAATCTCAACAAACAGGGATATTACATCGCGAGGTAGCGCAGATTGCAACCAACCTGATCGGTATCTCCGGTGTTCTCGGGAAATTCCAGTAAGATATCGTTCTCGGCGGCGATCACCTTACTCAGCCTCTGCTTCTGCTCCGTGCTCGCCGGCGCGCCGGACAACTTCCGCACCAACTGCAGCGGCAGAGCAACCGTGTCCTCATTAACTCCAGTTCGTTCCGGTCCATGTCTCGCGCAGTTGGCGAGCGACATGACACGGCATGTGTTGGGTGGTAGTAGATGGGTTTAGTTGGAGGGATCAATGATCAATCTAAACCTACCGTGGGATCGACGACGCCGTGGGCGCCGTCCTTGGCCGCCGCGGCGAAGTCCCGGCCGAACTTGTCCGCCAGGATGGCCCGCGCGTCGAGCAGCTCCGGCAGGTCGCCGCACCGCGCCGACGCGAACATGAGCCCCGCCGCCGCCTCCTTGATCTCCTCGCCGCACTCTCTGTATACACCAACCCAAAGATGACAAAAGCTTGCTGATGAGAGGCGATGAAAACGAAGAAACAAGGCAAGGAATTAATCAACCGAGGAGTCAAGAACACGGCTGTGTGCTCTTGCATACATACTTGGGCTTATCTAGCTGCGTGGCCTGCTCGATGAGGATTTTGCAGTAGAGCTCTACGATGTCCAGCACCTCCAGCATGTTGTCCTCGTCGATGACTTGCTCTGCCTGCAGAAACAGAACACGGCGGCTACTGTTAGCGGAGGAGTCTCTGCGCGTGTCAGGCAAGGCAAAAGCATGGCATGGACATACACGGAGGAGAGCGCGGTCGAGGTGGCCGATGGAGAGGAGCTGCGCGACATCGCCGCGGGCAATGGAGCGGCGCCCGAGGCGGGGCCGGCGGGCGACGGCGACGCGCGCGGCAGCGAGCTTGATCAGGGACTTGAGCTTGGCGGTCTGCTTCGAAGAGGCGCTCTTGCCGCCGAAGAGGCCCATCGCCCCCGCCGCGACGCGCTGTGACGGCGGTGTTCGATCGGGTGGTGAGTGTGGAGGCGGCGGGGGTGTAGCCTCCTACCCCTCTCTTATACCGCCCGCTCTGGAATCTTGGATTGGTGCTCTGTGGCGAGCAGCGGCGCGTGGCGAGAGCGCGAAGGAGAAGAAGATTGAAGGCCAAGTTGCTTGCTTGTTTTGGTCTCCGTCCATTCGATGGAAAAACGTTGGGCCGATTTTGGTCTTTTTACCGTGCCAACACATCAAGATAAATTG]
[+] EMBL AK110865 [CGACAAATTGTTCAGCTCGGACGTTCCTGGCTTGTTCATTCTGCTTGCCCTGCATTGCACAGTACAGCAACCATACGATTCCGTAACTTCGTAAGATAAAACCAACGAAAAATCTCAACAAACAGGGATATTACATCGCGAGGTAGCGCAGATTGCAACCAACCTGATCGGTATCTCCGGTGTTCTCGGGAAATTCCAGTAAGATATCGTTCTCGGCGGCGATCACCTTACTCAGCCTCTGCTTCTGCTCCGTGCTCGCCGGCGCGCCGGACAACTTCCGCACCAACTGCAGCGGCAGAGCAACCGTGTCCTCATTAACTCCAGTTCGTTCCGGTCCATGTCTCGCGCAGTTGGCGAGCGACATGACACGGCATGTGTTGGGTGGTAGTAGATGGGTTTAGTTGGAGGGATCAATGATCAATCTAAACCTACCGTGGGATCGACGACGCCGTGGGCGCCGTCCTTGGCCGCCGCGGCGAAGTCCCGGCCGAACTTGTCCGCCAGGATGGCCCGCGCGTCGAGCAGCTCCGGCAGGTCGCCGCACCGCGCCGACGCGAACATGAGCCCCGCCGCCGCCTCCTTGATCTCCTCGCCGCACTCTCTGTATACACCAACCCAAAGATGACAAAAGCTTGCTGATGAGAGGCGATGAAAACGAAGAAACAAGGCAAGGAATTAATCAACCGAGGAGTCAAGAACACGGCTGTGTGCTCTTGCATACATACTTGGGCTTATCTAGCTGCGTGGCCTGCTCGATGAGGATTTTGCAGTAGAGCTCTACGATGTCCAGCACCTCCAGCATGTTGTCCTCGTCGATGACTTGCTCTGCCTGCAGAAACAGAACACGGCGGCTACTGTTAGCGGAGGAGTCTCTGCGCGTGTCAGGCAAGGCAAAAGCATGGCATGGACATACACGGAGGAGAGCGCGGTCGAGGTGGCCGATGGAGAGGAGCTGCGCGACATCGCCGCGGGCAATGGAGCGGCGCCCGAGGCGGGGCCGGCGGGCGACGGCGACGCGCGCGGCAGCGAGCTTGATCAGGGACTTGAGCTTGGCGGTCTGCTTCGAAGAGGCGCTCTTGCCGCCGAAGAGGCCCATCGCCCCCGCCGCGACGCGCTGTGACGGCGGTGTTCGATCGGGTGGTGAGTGTGGAGGCGGCGGGGGTGTAGCCTCCTACCCCTCTCTTATACCGCCCGCTCTGGAATCTTGGATTGGTGCTCTGTGGCGAGCAGCGGCGCGTGGCGAGAGCGCGAAGGAGAAGAAGATTGAAGGCCAAGTTGCTTGCTTGTTTTGGTCTCCGTCCATTCGATGGAAAAACGTTGGGCCGATTTTGGTCTTTTTACCGTGCCAACACATCAAGATAAATTG]
consensusID : consensus_2479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence
[CTGTTCTTGCACGCTCAGCCGAGCAAGTATCGGGTTCACTTCTTCGTCAACAAACCTCTGCCTCCCCTGAACCTCGTGATGCTCCCTCTTGACCTCATTCTGTTCGACAAATTGTTCAGCTCGGACGTTCCTGGCTTGTTCATTCTGCTTGCCCTGATCGGTATCTCCGGTGTTCTCGGGAAATTCCAGTAAGATATCGTTCTCGGCGGCGATCACCTTAGTCAGCCTCTGCTTCTGCTCCGTGCTCGCCGGCGCGCCGGACAACTTCCGCACCAACGTGGGATCGACGACGCCGTGGGCGCCGTCCTTGGCCGCCGCGGCGAAGTCCCGGCCGAACTTGTCCGCCAGGATGGCCCGCGCGTCGAGCAGCTCCGGCAGGTCGCCGCACCGCGCCGACGCGAACATGAGCCCCGCCGCCGCCTCCTTGATCTCCTCGCCGCACTCTTTGGGCTTATCTAGCTGCGTGGCCTGCTCGATGAGGATTTTGCAGTAGAGCTCTACGATGTCCAGCACCTCCAGCATGTTGTCCTCGTCGATGACTTGCTCTGCACGGAGGAGAGCGCGGTCGAGGTGGCCGATGGAGAGGAGCTGCGCGACATCGCCGCGGGCAATGGAGCGGCGCCCGAGGCGGGGCCGGCGGGCGACGGCGACGCGCGCGGCAGCGAGCTTGATCAGGGACTTGAGCTTGGCGGTCTGCTTCGAAGAGGCGCTCTTGCCGCCGAAGAGGCCCATCGCCCCCGCCGCGACGCGCTGTGACG]
[-] EMBL CB667768 [CTGTTCTTGCACGCTCAGCCGAGCAAGTATCGGGTTCACTTCTTCGTCAACAAACCTCTGCCTCCCCTGAACCTCGTGATGCTCCCTCTTGACCTCATTCTGTTCGACAAATTGTTCAGCTCGGACGTTCCTGGCTTGTTCATTCTGCTTGCCCTGATCGGTATCTCCGGTGTTCTCGGGAAATTCCAGTAAGATATCGTTCTCGGCGGCGATCACCTTAGTCAGCCTCTGCTTCTGCTCCGTGCTCGCCGGCGCGCCGGACAACTTCCGCACCAACGTGGGATCGACGACGCCGTGGGCGCCGTCCTTGGCCGCCGCGGCGAAGTCCCGGCCGAACTTGTCCGCCAGGATGGCCCGCGCGTCGAGCAGCTCCGGCAGGTCGCCGCACCGCGCCGACGCGAACATGAGCCCCGCCGCCGCCTCCTTGATCTCCTCGCCGCACTCTTTGGGCTTATCTAGCTGCGTGGCCTGCTCGATGAGGATTTTGCAGTAGAGCTCTACGATGTCCAGCACCTCCAGCATGTTGTCCTCGTCGATGACTTGCTCTGCACGGAGGAGAGCGCGGTCGAGGTGGCCGATGGAGAGGAGCTGCGCGACATCGCCGCGGGCAATGGAGCGGCGCCCGAGGCGGGGCCGGCGGGCGACGGCGACGCGCGCGGCAGCGAGCTTGATCAGGGACTTGAGCTTGGCGGTCTGCTTCGAAGAGGCGCTCTTGCCGCCGAAGAGGCCCATCGCCCCCGCCGCGACGCGCTGTGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2479#0 CGACAAATTGTTCA-GCTCGGACGTTCCTGGCTTGTTCATTCTGCTTGCCCTGCATTGCA 59
consensus_2479#1 ---CTGTTCTTGCACGCTCAGCCGAGCAAGTATCGGGTTCACTTCTTCGTCAACAAACCT 57
* * * ** **** * ** * * * * ** *** * ** *
consensus_2479#0 CAGTACAGCAACCATACGATTCCGTAACTTCGTAAGATAAAACCAACGAAAAATCTCAAC 119
consensus_2479#1 CTGCCTCCCCTGAACCTCGTGATGCTCCCTCTTGACCTCATTCTGTTCGACAAATTGTTC 117
* * * * * * * ** * * * * * * ** * *
consensus_2479#0 AAACAGGGATATTACATCGCGAGGTAGCGCAGATTGCAACCAACCTGATCGGTATCTCCG 179
consensus_2479#1 AGCTCGG------ACGTTCCTGGCTTGTTCATTCTGC--TTGCCCTGATCGGTATCTCCG 169
* ** ** * * * * * ** *** *****************
consensus_2479#0 GTGTTCTCGGGAAATTCCAGTAAGATATCGTTCTCGGCGGCGATCACCTTACTCAGCCTC 239
consensus_2479#1 GTGTTCTCGGGAAATTCCAGTAAGATATCGTTCTCGGCGGCGATCACCTTAGTCAGCCTC 229
*************************************************** ********
consensus_2479#0 TGCTTCTGCTCCGTGCTCGCCGGCGCGCCGGACAACTTCCGCACCAACTGCAGCGGCAGA 299
consensus_2479#1 TGCTTCTGCTCCGTGCTCGCCGGCGCGCCGGACAACTTCCGCACCAAC------------ 277
************************************************
consensus_2479#0 GCAACCGTGTCCTCATTAACTCCAGTTCGTTCCGGTCCATGTCTCGCGCAGTTGGCGAGC 359
consensus_2479#1 ------------------------------------------------------------
consensus_2479#0 GACATGACACGGCATGTGTTGGGTGGTAGTAGATGGGTTTAGTTGGAGGGATCAATGATC 419
consensus_2479#1 ------------------------------------------------------------
consensus_2479#0 AATCTAAACCTACCGTGGGATCGACGACGCCGTGGGCGCCGTCCTTGGCCGCCGCGGCGA 479
consensus_2479#1 --------------GTGGGATCGACGACGCCGTGGGCGCCGTCCTTGGCCGCCGCGGCGA 323
**********************************************
consensus_2479#0 AGTCCCGGCCGAACTTGTCCGCCAGGATGGCCCGCGCGTCGAGCAGCTCCGGCAGGTCGC 539
consensus_2479#1 AGTCCCGGCCGAACTTGTCCGCCAGGATGGCCCGCGCGTCGAGCAGCTCCGGCAGGTCGC 383
************************************************************
consensus_2479#0 CGCACCGCGCCGACGCGAACATGAGCCCCGCCGCCGCCTCCTTGATCTCCTCGCCGCACT 599
consensus_2479#1 CGCACCGCGCCGACGCGAACATGAGCCCCGCCGCCGCCTCCTTGATCTCCTCGCCGCACT 443
************************************************************
consensus_2479#0 CTCTGTATACACCAACCCAAAGATGACAAAAGCTTGCTGATGAGAGGCGATGAAAACGAA 659
consensus_2479#1 CT---------------------------------------------------------- 445
**
consensus_2479#0 GAAACAAGGCAAGGAATTAATCAACCGAGGAGTCAAGAACACGGCTGTGTGCTCTTGCAT 719
consensus_2479#1 ------------------------------------------------------------
consensus_2479#0 ACATACTTGGGCTTATCTAGCTGCGTGGCCTGCTCGATGAGGATTTTGCAGTAGAGCTCT 779
consensus_2479#1 ------TTGGGCTTATCTAGCTGCGTGGCCTGCTCGATGAGGATTTTGCAGTAGAGCTCT 499
******************************************************
consensus_2479#0 ACGATGTCCAGCACCTCCAGCATGTTGTCCTCGTCGATGACTTGCTCTGCCTGCAGAAAC 839
consensus_2479#1 ACGATGTCCAGCACCTCCAGCATGTTGTCCTCGTCGATGACTTGCTCTGC---------- 549
**************************************************
consensus_2479#0 AGAACACGGCGGCTACTGTTAGCGGAGGAGTCTCTGCGCGTGTCAGGCAAGGCAAAAGCA 899
consensus_2479#1 ------------------------------------------------------------
consensus_2479#0 TGGCATGGACATACACGGAGGAGAGCGCGGTCGAGGTGGCCGATGGAGAGGAGCTGCGCG 959
consensus_2479#1 --------------ACGGAGGAGAGCGCGGTCGAGGTGGCCGATGGAGAGGAGCTGCGCG 595
**********************************************
consensus_2479#0 ACATCGCCGCGGGCAATGGAGCGGCGCCCGAGGCGGGGCCGGCGGGCGACGGCGACGCGC 1019
consensus_2479#1 ACATCGCCGCGGGCAATGGAGCGGCGCCCGAGGCGGGGCCGGCGGGCGACGGCGACGCGC 655
************************************************************
consensus_2479#0 GCGGCAGCGAGCTTGATCAGGGACTTGAGCTTGGCGGTCTGCTTCGAAGAGGCGCTCTTG 1079
consensus_2479#1 GCGGCAGCGAGCTTGATCAGGGACTTGAGCTTGGCGGTCTGCTTCGAAGAGGCGCTCTTG 715
************************************************************
consensus_2479#0 CCGCCGAAGAGGCCCATCGCCCCCGCCGCGACGCGCTGTGACGGCGGTGTTCGATCGGGT 1139
consensus_2479#1 CCGCCGAAGAGGCCCATCGCCCCCGCCGCGACGCGCTGTGACG----------------- 758
*******************************************
consensus_2479#0 GGTGAGTGTGGAGGCGGCGGGGGTGTAGCCTCCTACCCCTCTCTTATACCGCCCGCTCTG 1199
consensus_2479#1 ------------------------------------------------------------
consensus_2479#0 GAATCTTGGATTGGTGCTCTGTGGCGAGCAGCGGCGCGTGGCGAGAGCGCGAAGGAGAAG 1259
consensus_2479#1 ------------------------------------------------------------
consensus_2479#0 AAGATTGAAGGCCAAGTTGCTTGCTTGTTTTGGTCTCCGTCCATTCGATGGAAAAACGTT 1319
consensus_2479#1 ------------------------------------------------------------
consensus_2479#0 GGGCCGATTTTGGTCTTTTTACCGTGCCAACACATCAAGATAAATTG 1366
consensus_2479#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||