cluster # 2484

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Oryza sativa
cluster # 2484 cluster # 2484 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2484#0 length = 812 sequences # 1

consensus_2484#1 length = 675 sequences # 1

consensusID : consensus_2484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 812
fasta sequence

                              [CTCGGCGCAGACTGCAGTGCTCTCTGTAAATGGTATTTTCTCCTTGTGGAGAGATTGTTGATTTGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGGAGAGGGAGTGTGCTTATATTGCTAAAAGGCAAATAAATGGTTTTGAGCTTCAAGGAAAGAGACTTGCTGTTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAGATTGGGGCATCGAAGAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGGTTGACCTTGCAATGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACGTCTAAATCGAGGCTTTGCATTTGTGCGATTTTCTTCTCATGCAGTATTGACCAATATATAGCCTCTTGTCTTAAAACAATCTTTATTGGATAAAACCATCTGACTGAAATATAGGGATATGTATAAAGTTAGCTTCTTTCTCTTCTCCTGGATTCCTGATGAATGATCCTATCCTTTTGTGGTGTGCCTTAAATCTATCTGCTACAAAAGAAGCGCATTATCAAGTAATTGCATATCTAAGTAATTTTGTCTCCTTTATGAGATGANGGGCCAGACGATGGTGCATTGTCACAATGGTACCAACATATNCTTATCATCTACTGACAAGAAAATCAATCCATATCNTTTACTCAGNGGTGGTTATGACGTAATGGAATGCACTTTTATCATCTGATCNTTCAAATGACTGGATTGGNGNTGCAAAGGGCATCTTCTATNGGTTAGGTTTCATATGGAAAGG]

[+] EMBL CA765176             [CTCGGCGCAGACTGCAGTGCTCTCTGTAAATGGTATTTTCTCCTTGTGGAGAGATTGTTGATTTGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGGAGAGGGAGTGTGCTTATATTGCTAAAAGGCAAATAAATGGTTTTGAGCTTCAAGGAAAGAGACTTGCTGTTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAGATTGGGGCATCGAAGAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGGTTGACCTTGCAATGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACGTCTAAATCGAGGCTTTGCATTTGTGCGATTTTCTTCTCATGCAGTATTGACCAATATATAGCCTCTTGTCTTAAAACAATCTTTATTGGATAAAACCATCTGACTGAAATATAGGGATATGTATAAAGTTAGCTTCTTTCTCTTCTCCTGGATTCCTGATGAATGATCCTATCCTTTTGTGGTGTGCCTTAAATCTATCTGCTACAAAAGAAGCGCATTATCAAGTAATTGCATATCTAAGTAATTTTGTCTCCTTTATGAGATGANGGGCCAGACGATGGTGCATTGTCACAATGGTACCAACATATNCTTATCATCTACTGACAAGAAAATCAATCCATATCNTTTACTCAGNGGTGGTTATGACGTAATGGAATGCACTTTTATCATCTGATCNTTCAAATGACTGGATTGGNGNTGCAAAGGGCATCTTCTATNGGTTAGGTTTCATATGGAAAGG]




>consensus_2484#0
CTCGGCGCAGACTGCAGTGCTCTCTGTAAATGGTATTTTCTCCTTGTGGAGAGATTGTTG
ATTTGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTG
CGGAGAGGGAGTGTGCTTATATTGCTAAAAGGCAAATAAATGGTTTTGAGCTTCAAGGAA
AGAGACTTGCTGTTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCA
AAGATTGGGGCATCGAAGAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTT
CGGTTGACCTTGCAATGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACGTCTAAATC
GAGGCTTTGCATTTGTGCGATTTTCTTCTCATGCAGTATTGACCAATATATAGCCTCTTG
TCTTAAAACAATCTTTATTGGATAAAACCATCTGACTGAAATATAGGGATATGTATAAAG
TTAGCTTCTTTCTCTTCTCCTGGATTCCTGATGAATGATCCTATCCTTTTGTGGTGTGCC
TTAAATCTATCTGCTACAAAAGAAGCGCATTATCAAGTAATTGCATATCTAAGTAATTTT
GTCTCCTTTATGAGATGANGGGCCAGACGATGGTGCATTGTCACAATGGTACCAACATAT
NCTTATCATCTACTGACAAGAAAATCAATCCATATCNTTTACTCAGNGGTGGTTATGACG
TAATGGAATGCACTTTTATCATCTGATCNTTCAAATGACTGGATTGGNGNTGCAAAGGGC
ATCTTCTATNGGTTAGGTTTCATATGGAAAGG

consensusID : consensus_2484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [TTTTTTTTTTGGTTGCTCGTGGGGGATTTCAGGAGAAGAGGGGGGCGGCGTCGCATGGCGACTACCACGAGCAAGATCGCCGGGTGAAAGGCGCCGAGGTGTTCGTCGGCGGGTTGCCGCGGTCGGTGACGGAGCGGGCGCTCCGAGAGGTATTTTCTCCTTGTGGAGAGATTGTTGATTTGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGGAGAGGGAGTGTGCTTATATTGCTAAAAGGCTAATAAATGGTTTTGAGCTTCAAGGAAAGAGACTTGCTGCTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAGATTGGGGCATCGAAAAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGGTTGACCTTGCACTGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACCTCTAAATCGAGGCTTTGCATTTGTGCGATTTTCTTCTCATGCAGGAAGGCTTATTCCTTATTTTTGGTAATTCCCTCACCCATTGGATTCTACCATGGAAATGTTGACCTTATATTATTGATGGGTATACTTAAACCTCCCTTTAACATCATTTTTCGGTGGAGTTATGTGTTTCCTTACCTTTAAGGGAGGGGTTCAGCCTTCCT]

[+] EMBL CA762635             [TTTTTTTTTTGGTTGCTCGTGGGGGATTTCAGGAGAAGAGGGGGGCGGCGTCGCATGGCGACTACCACGAGCAAGATCGCCGGGTGAAAGGCGCCGAGGTGTTCGTCGGCGGGTTGCCGCGGTCGGTGACGGAGCGGGCGCTCCGAGAGGTATTTTCTCCTTGTGGAGAGATTGTTGATTTGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGGAGAGGGAGTGTGCTTATATTGCTAAAAGGCTAATAAATGGTTTTGAGCTTCAAGGAAAGAGACTTGCTGCTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAGATTGGGGCATCGAAAAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGGTTGACCTTGCACTGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACCTCTAAATCGAGGCTTTGCATTTGTGCGATTTTCTTCTCATGCAGGAAGGCTTATTCCTTATTTTTGGTAATTCCCTCACCCATTGGATTCTACCATGGAAATGTTGACCTTATATTATTGATGGGTATACTTAAACCTCCCTTTAACATCATTTTTCGGTGGAGTTATGTGTTTCCTTACCTTTAAGGGAGGGGTTCAGCCTTCCT]




>consensus_2484#1
TTTTTTTTTTGGTTGCTCGTGGGGGATTTCAGGAGAAGAGGGGGGCGGCGTCGCATGGCG
ACTACCACGAGCAAGATCGCCGGGTGAAAGGCGCCGAGGTGTTCGTCGGCGGGTTGCCGC
GGTCGGTGACGGAGCGGGCGCTCCGAGAGGTATTTTCTCCTTGTGGAGAGATTGTTGATT
TGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGG
AGAGGGAGTGTGCTTATATTGCTAAAAGGCTAATAAATGGTTTTGAGCTTCAAGGAAAGA
GACTTGCTGCTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAG
ATTGGGGCATCGAAAAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGG
TTGACCTTGCACTGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACCTCTAAATCGAG
GCTTTGCATTTGTGCGATTTTCTTCTCATGCAGGAAGGCTTATTCCTTATTTTTGGTAAT
TCCCTCACCCATTGGATTCTACCATGGAAATGTTGACCTTATATTATTGATGGGTATACT
TAAACCTCCCTTTAACATCATTTTTCGGTGGAGTTATGTGTTTCCTTACCTTTAAGGGAG
GGGTTCAGCCTTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2484#0      ------------------------------------------------------------
consensus_2484#1      TTTTTTTTTTGGTTGCTCGTGGGGGATTTCAGGAGAAGAGGGGGGCGGCGTCGCATGGCG 60
                                                                                  

consensus_2484#0      ---------------------------------------------------------CTC 3
consensus_2484#1      ACTACCACGAGCAAGATCGCCGGGTGAAAGGCGCCGAGGTGTTCGTCGGCGGGTTGCCGC 120
                                                                               * *

consensus_2484#0      GGCGCAGACTGCAGTGCTCTCTGTAAATGGTATTTTCTCCTTGTGGAGAGATTGTTGATT 63
consensus_2484#1      GGTCGGTGACGGAGCGGGCGCTCCGAGAGGTATTTTCTCCTTGTGGAGAGATTGTTGATT 180
                      **        * ** *  * **   *  ********************************

consensus_2484#0      TGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGG 123
consensus_2484#1      TGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGG 240
                      ************************************************************

consensus_2484#0      AGAGGGAGTGTGCTTATATTGCTAAAAGGCAAATAAATGGTTTTGAGCTTCAAGGAAAGA 183
consensus_2484#1      AGAGGGAGTGTGCTTATATTGCTAAAAGGCTAATAAATGGTTTTGAGCTTCAAGGAAAGA 300
                      ****************************** *****************************

consensus_2484#0      GACTTGCTGTTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAG 243
consensus_2484#1      GACTTGCTGCTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAG 360
                      ********* **************************************************

consensus_2484#0      ATTGGGGCATCGAAGAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGG 303
consensus_2484#1      ATTGGGGCATCGAAAAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGG 420
                      ************** *********************************************

consensus_2484#0      TTGACCTTGCAATGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACGTCTAAATCGAG 363
consensus_2484#1      TTGACCTTGCACTGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACCTCTAAATCGAG 480
                      *********** ************************************ ***********

consensus_2484#0      GCTTTGCATTTGTGCGATTTTCTTCTCATGCAGTA----TTGACCAATAT-----ATAGC 414
consensus_2484#1      GCTTTGCATTTGTGCGATTTTCTTCTCATGCAGGAAGGCTTATTCCTTATTTTTGGTAAT 540
                      ********************************* *    **   *  ***      **  

consensus_2484#0      CTCTTGTCTTAAAACAATCTTTATTGGATAAAACCATCTGACTGAAATATAGGGATATGT 474
consensus_2484#1      TCCCTCACCCATTGGATTCTACCATGGAAATGTTGACCTTA-TATTATTGATGGGTATAC 599
                        * *  *  *    * ***    **** *     * ** * *   **  * ** ***  

consensus_2484#0      ATAAAGTTAGCTTCTTTCTCTTCTCCTGGATTCCTGATGAATGATCCTATCCTTTTGTGG 534
consensus_2484#1      TTAAACCTCCCTTTAACATCATTTTTCGG--TGGAGTTATGTGTTTCCTTACCTTTAAGG 657
                       ****  *  ***     ** * *   **  *   * *   ** * *  * * ***  **

consensus_2484#0      TGTGCCTTAAATCTATCTGCTACAAAAGAAGCGCATTATCAAGTAATTGCATATCTAAGT 594
consensus_2484#1      GAGGGGTTCAGCCTTCCT------------------------------------------ 675
                         *  ** *  **  **                                          

consensus_2484#0      AATTTTGTCTCCTTTATGAGATGANGGGCCAGACGATGGTGCATTGTCACAATGGTACCA 654
consensus_2484#1      ------------------------------------------------------------
                                                                                  

consensus_2484#0      ACATATNCTTATCATCTACTGACAAGAAAATCAATCCATATCNTTTACTCAGNGGTGGTT 714
consensus_2484#1      ------------------------------------------------------------
                                                                                  

consensus_2484#0      ATGACGTAATGGAATGCACTTTTATCATCTGATCNTTCAAATGACTGGATTGGNGNTGCA 774
consensus_2484#1      ------------------------------------------------------------
                                                                                  

consensus_2484#0      AAGGGCATCTTCTATNGGTTAGGTTTCATATGGAAAGG 812
consensus_2484#1      --------------------------------------