cluster # 2495

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Oryza sativa
cluster # 2495 cluster # 2495 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2495#0 length = 516 sequences # 1

consensus_2495#1 length = 485 sequences # 1

consensusID : consensus_2495#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [CACCATATACTTCCGTCTGCGGCTTTCCCGAACCCACTTGCAGGCATCGGCCCAGAAGGTGGACAATCCGCGTCGCCGCACTCCGGGCCACGTCCGTCTTGCTGCCCACTTCCATGGCGCCACAGCCCCGGCACTCACAGGCTCCGAGGCACCACGTCGCACCCCGGTGGTGCAGCGGCTCAGTCCAGGCCAACGCACCGCACAGCCCCAGTCGCCGCACGGGCAACGCCCCCAGTTGCCAGCTTCCGTCTTCACAGGCCATCCCGTGTCCAGTGCTCTCCGTCGCCAGCCGCTGGCCTGAAGTTGATCTATTGGGGGGTGTGCGTTACGTGCCCTCCCGGAGATGGTGTCGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACCCGTGTTCATTTTCTCTGTTTCCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTGTGGATCTTCCTCCAACCTTCAGAATCTCTCCCGGTTGTCAACCTCAAAAAA]

[+] EMBL BI798090             [CACCATATACTTCCGTCTGCGGCTTTCCCGAACCCACTTGCAGGCATCGGCCCAGAAGGTGGACAATCCGCGTCGCCGCACTCCGGGCCACGTCCGTCTTGCTGCCCACTTCCATGGCGCCACAGCCCCGGCACTCACAGGCTCCGAGGCACCACGTCGCACCCCGGTGGTGCAGCGGCTCAGTCCAGGCCAACGCACCGCACAGCCCCAGTCGCCGCACGGGCAACGCCCCCAGTTGCCAGCTTCCGTCTTCACAGGCCATCCCGTGTCCAGTGCTCTCCGTCGCCAGCCGCTGGCCTGAAGTTGATCTATTGGGGGGTGTGCGTTACGTGCCCTCCCGGAGATGGTGTCGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACCCGTGTTCATTTTCTCTGTTTCCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTGTGGATCTTCCTCCAACCTTCAGAATCTCTCCCGGTTGTCAACCTCAAAAAA]




>consensus_2495#0
CACCATATACTTCCGTCTGCGGCTTTCCCGAACCCACTTGCAGGCATCGGCCCAGAAGGT
GGACAATCCGCGTCGCCGCACTCCGGGCCACGTCCGTCTTGCTGCCCACTTCCATGGCGC
CACAGCCCCGGCACTCACAGGCTCCGAGGCACCACGTCGCACCCCGGTGGTGCAGCGGCT
CAGTCCAGGCCAACGCACCGCACAGCCCCAGTCGCCGCACGGGCAACGCCCCCAGTTGCC
AGCTTCCGTCTTCACAGGCCATCCCGTGTCCAGTGCTCTCCGTCGCCAGCCGCTGGCCTG
AAGTTGATCTATTGGGGGGTGTGCGTTACGTGCCCTCCCGGAGATGGTGTCGGTTAGGAT
GGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACCCGTGTTCATTTTCTCTGTTT
CCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTGTGGATCTTCCTCCAA
CCTTCAGAATCTCTCCCGGTTGTCAACCTCAAAAAA

consensusID : consensus_2495#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [CACGCCACGGGCCACCAGTACTTCCTCTGCGGCTTCCCGAACCACTGCGGCATCGCCAGAAGGTGGACATCCGCGTCGCCGCCTCCGGCCACTCCTCTGCTGCCCCTTCCATGGCGCCCGCCCCGGCCTCCGGCTCCGAGGCACCCGTCGCCCCCGGTGGTGCGCGGCTCGTCCGGCCACCAGCCCCGCCCCGTCGCCGCACGGCAACGCCGCCGTTGCCGCTCCGTCTTCACGGCCATCGCCGTGTCCGTGCTCTCCGTCGCCGCCGCTGGCCTGAAGTTGATCTAGTTGGGGGGTGTGCGTACGTGTGTCCGGAGATGGTGTTCGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACCGTGTTCATTTTCTCTTTTGCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTGTGGATCTTGCTGCATTTGAGGATCTCTGCCGGTTGTCAAAAAAAAAA]

[+] EMBL BI801663             [CACGCCACGGGCCACCAGTACTTCCTCTGCGGCTTCCCGAACCACTGCGGCATCGCCAGAAGGTGGACATCCGCGTCGCCGCCTCCGGCCACTCCTCTGCTGCCCCTTCCATGGCGCCCGCCCCGGCCTCCGGCTCCGAGGCACCCGTCGCCCCCGGTGGTGCGCGGCTCGTCCGGCCACCAGCCCCGCCCCGTCGCCGCACGGCAACGCCGCCGTTGCCGCTCCGTCTTCACGGCCATCGCCGTGTCCGTGCTCTCCGTCGCCGCCGCTGGCCTGAAGTTGATCTAGTTGGGGGGTGTGCGTACGTGTGTCCGGAGATGGTGTTCGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACCGTGTTCATTTTCTCTTTTGCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTGTGGATCTTGCTGCATTTGAGGATCTCTGCCGGTTGTCAAAAAAAAAA]




>consensus_2495#1
CACGCCACGGGCCACCAGTACTTCCTCTGCGGCTTCCCGAACCACTGCGGCATCGCCAGA
AGGTGGACATCCGCGTCGCCGCCTCCGGCCACTCCTCTGCTGCCCCTTCCATGGCGCCCG
CCCCGGCCTCCGGCTCCGAGGCACCCGTCGCCCCCGGTGGTGCGCGGCTCGTCCGGCCAC
CAGCCCCGCCCCGTCGCCGCACGGCAACGCCGCCGTTGCCGCTCCGTCTTCACGGCCATC
GCCGTGTCCGTGCTCTCCGTCGCCGCCGCTGGCCTGAAGTTGATCTAGTTGGGGGGTGTG
CGTACGTGTGTCCGGAGATGGTGTTCGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGC
TTTTGCGTTTGGACCGTGTTCATTTTCTCTTTTGCCCCCTCCTTTCGTGTCGTAATTAAT
TAAACTAGTATGATCCTGTGGATCTTGCTGCATTTGAGGATCTCTGCCGGTTGTCAAAAA
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2495#0      ------------CACCATATACTTCCGTCTGCGGCTTTCCCGAACCCACTTGCAGGCATC 48
consensus_2495#1      CACGCCACGGGCCACCA-GTACTTCC-TCTGCGGCTT-CCCGAACC--ACTGC-GGCATC 54
                                  *****  ******* ********** ********    *** ******

consensus_2495#0      GGCCCAGAAGGTGGACAATCCGCGTCGCCGCACTCCGGGCCACGTCCGTCTTGCTGCCCA 108
consensus_2495#1      G--CCAGAAGGTGGACA-TCCGCGTCGCCGC-CTCCGG-CCACTCCT---CTGCTGCCC- 105
                      *  ************** ************* ****** ****  *     ******** 

consensus_2495#0      CTTCCATGGCGCCACAGCCCCGGCACTCACAGGCTCCGAGGCACCACGTCGCACCCCGGT 168
consensus_2495#1      CTTCCATGGCGCC--CGCCCCGGC---CTCCGGCTCCGAGGCACC-CGTCGC-CCCCGGT 158
                      *************   ********   * * ************** ****** *******

consensus_2495#0      GGTGCAGCGGCTCAGTCCAGGCCAACGCACCGCACAGCCCCAGTCGCCGCACGGGCAACG 228
consensus_2495#1      GGTGC-GCGGCTC-GTCC-GGCCACCA----GCCCCGCCCC-GTCGCCGCACGG-CAACG 209
                      ***** ******* **** ***** *     ** * ***** ************ *****

consensus_2495#0      CCCCCAGTTGCCAGCTTCCGTCTTCACAGGCCATC-CCGTGTCCAGTGCTCTCCGTCGCC 287
consensus_2495#1      CCGCC-GTTGCCG--CTCCGTCTTCAC-GGCCATCGCCGTGTCC-GTGCTCTCCGTCGCC 264
                      ** ** ******    *********** ******* ******** ***************

consensus_2495#0      AGCCGCTGGCCTGAAGTTGATCTA-TTGGGGGGTGTGCGTTACGTGCCCTCCCGGAGATG 346
consensus_2495#1      -GCCGCTGGCCTGAAGTTGATCTAGTTGGGGGGTGTGCGT-ACGTGTG--TCCGGAGATG 320
                       *********************** *************** *****     *********

consensus_2495#0      GTGT-CGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACCCGTGT 405
consensus_2495#1      GTGTTCGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACC-GTGT 379
                      **** ************************************************** ****

consensus_2495#0      TCATTTTCTCTGTTTCCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTG 465
consensus_2495#1      TCATTTTCTCT-TTTGCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTG 438
                      *********** *** ********************************************

consensus_2495#0      TGGATCTTCCTCCAACCTTCAGAATCTCTCCCGGTTGTCAACCTCAAAAAA 516
consensus_2495#1      TGGATCTTGCTGCA--TTTGAGGATCTCTGCCGGTTGTCAAAAAAAAAA-- 485
                      ******** ** **   ** ** ****** ***********    ****