These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1373 fasta sequence [TACTGGAGAGAAAAATTAATTAAGCAGCTTCTTCCATTCAGACATAGGTCGATCCATCGCGATTCTTCCATGGACGTCGACGAGCTGTTGTTGATAGCAATCAGCCATGGAAACAACGAAGACGGTAGCGACGGGGTTGTCGGGATATCGGACGAGGTGTACGCCGCGGAGCTCCAGCTCCAAGAGTTGATCATGTCGTCCGCCATGGCGGCCACCGCTGCGGCGGCGGCAGATCAGCTTGACAGCGGTAGCGCCGTCCACGCGTCGAGCGAGGACGCAGCAGCTGCAGCTCATGCGAAGACGTCTCCATCCTCCGCTCTCGTCCCCGCCGCCGAGTGCTCGTCCTCCTCGGCAGCGGCCATGACCCTTGTCGCCAGCGTCGTCAAGTGCTCCTGCTCCTCGTCAGCTATGGCACCGTCGGCCACCACCACGTCGTTCCTCTTCTGCAAGATCTGCATGGACGACGTGCCGGCGTCCGACGCGCACCGCGGCAGCCACGGCTGCGCGCACGCCTTCTGCGCCGCCTGCCTCGCCGGCCACATCGCCGCTAAGCTCCACTCCGGCGGCGGCGTCTACTGCCCCGAGGATGGCTGCGCCAGCGCGGTCGACCCGGAGCTCTGCCAACCCATCCTCCCAGAGGACAACTTCGAGCGGTGGTGCGCCGCGCTGTGCCGGGCCATGGTGCTCGGAGGCCGCCACGTGTACTGCCCGTTCACGGACTGCGCAGAGATCATCGCCGACGAGCGGGGCGGCGACAGCGACGGCCAGCCGACGGAGTGCCCGGCGTGCCGGAGGCGGTTCTGCGAGCGGTGCGGCGTGGCGTGGCACGGAGGCGTGAGCTGCGGCGAGTACGGGGAGCTGGCGGTGGGGGACAGGGGGGAGGGGGACCTGGCGGTGGTGGAGATGGCCAAGGGGAGCAGGTGGCGGCGGTGCCCGCGGTGCGAGTTCTTCGTGGACAGGTACGAAGGCTGCTCGCACATCACCTGCAGGTGCGGGCTGGAGTTCTGCTACGGGTGTGGCCAGGAATGGGGGCCTACTGGTCATTCCTCGTGTCAGCGACCTTGAAACACCTGGATGGTCGGGATTCGGATGCTGGACATGCCCCGTCAGTCAAACTATTATAACTAGTGTTATGTTATCACCTGTTAATCTGCTATCTATCCGAATTTAATTCATCTTAGGTTTAGATCTCGGTGCCAGCTCTTTACACCTAAATTTGGTATCTAGTAATTATAGTCGTTGAGATAGATAAAAAACAAGTGTGCAGTCCAACTATTTTTTACTATTGCTAGTATTGTTAGCTGTTTTCTATCCAATTTAATTGGTGGTTTAAGTCATGTATTATTTTTTTTTGAGAATTTATGTCATGTACT] [+] EMBL AK069582 [TACTGGAGAGAAAAATTAATTAAGCAGCTTCTTCCATTCAGACATAGGTCGATCCATCGCGATTCTTCCATGGACGTCGACGAGCTGTTGTTGATAGCAATCAGCCATGGAAACAACGAAGACGGTAGCGACGGGGTTGTCGGGATATCGGACGAGGTGTACGCCGCGGAGCTCCAGCTCCAAGAGTTGATCATGTCGTCCGCCATGGCGGCCACCGCTGCGGCGGCGGCAGATCAGCTTGACAGCGGTAGCGCCGTCCACGCGTCGAGCGAGGACGCAGCAGCTGCAGCTCATGCGAAGACGTCTCCATCCTCCGCTCTCGTCCCCGCCGCCGAGTGCTCGTCCTCCTCGGCAGCGGCCATGACCCTTGTCGCCAGCGTCGTCAAGTGCTCCTGCTCCTCGTCAGCTATGGCACCGTCGGCCACCACCACGTCGTTCCTCTTCTGCAAGATCTGCATGGACGACGTGCCGGCGTCCGACGCGCACCGCGGCAGCCACGGCTGCGCGCACGCCTTCTGCGCCGCCTGCCTCGCCGGCCACATCGCCGCTAAGCTCCACTCCGGCGGCGGCGTCTACTGCCCCGAGGATGGCTGCGCCAGCGCGGTCGACCCGGAGCTCTGCCAACCCATCCTCCCAGAGGACAACTTCGAGCGGTGGTGCGCCGCGCTGTGCCGGGCCATGGTGCTCGGAGGCCGCCACGTGTACTGCCCGTTCACGGACTGCGCAGAGATCATCGCCGACGAGCGGGGCGGCGACAGCGACGGCCAGCCGACGGAGTGCCCGGCGTGCCGGAGGCGGTTCTGCGAGCGGTGCGGCGTGGCGTGGCACGGAGGCGTGAGCTGCGGCGAGTACGGGGAGCTGGCGGTGGGGGACAGGGGGGAGGGGGACCTGGCGGTGGTGGAGATGGCCAAGGGGAGCAGGTGGCGGCGGTGCCCGCGGTGCGAGTTCTTCGTGGACAGGTACGAAGGCTGCTCGCACATCACCTGCAGGTGCGGGCTGGAGTTCTGCTACGGGTGTGGCCAGGAATGGGGGCCTACTGGTCATTCCTCGTGTCAGCGACCTTGAAACACCTGGATGGTCGGGATTCGGATGCTGGACATGCCCCGTCAGTCAAACTATTATAACTAGTGTTATGTTATCACCTGTTAATCTGCTATCTATCCGAATTTAATTCATCTTAGGTTTAGATCTCGGTGCCAGCTCTTTACACCTAAATTTGGTATCTAGTAATTATAGTCGTTGAGATAGATAAAAAACAAGTGTGCAGTCCAACTATTTTTTACTATTGCTAGTATTGTTAGCTGTTTTCTATCCAATTTAATTGGTGGTTTAAGTCATGTATTATTTTTTTTTGAGAATTTATGTCATGTACT] consensusID : consensus_2498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [TTAACCATTTGTAAAACTATTACTCCCAGTAAAACTTTTAGTTACGGTAATTCAGGTTATCACTACATATTTTAGATTGGGCAAAATTTGCTACAGGACACTCAAAAAACATGTAATTGGCTATGAAACATCGCAAAAACGTGACACGGCTGATGGACACTACAAAAATTGTGTAATTGGCTATAGGACACCGGTCGCATTATTTTATTATTTTCGGTTCAAAAGAGGTGAGAATTTTTTCCAAATGACGAGATTGCCCCTGTGCCATCTTCCTTCACCCGAAATCACAAATTTTTTGTAGCTGCCGGCGAGGTAGCTGGCGGTGGTGACCGCGCGCCAGGAGCAGCAGACGGCGCGGAGGCGGACGTGGTTGGAAGGGACGGGAGCTGGAGGAGCACGAGCCCTAGCAGGTCCGCCAAGAGATCCTACCACGGCGGCGATGGCTGTTGCGCTGCCGCCATCCTCCTCCTCCTCGTCGGTGCCGGCGGCAGAGCTTGACAGCGGTAACGCCATCCACGCGTCGAGCGAGGACACAGCAGCTGCAGCTCATGCGGAGACGTCTCCATCCTCCGCTCTCGTCCCCGGCGCCGCCACCACCGAGTGCTCGTCCAGCGTCGGCAAGTGCTCTCCATCCTGCAGCCATGACCCTTGTCGCTAGCGTCGGCAAGTGCTCCTGCTCCTCATCAACTGTGCCGCTGCCCGTCCTCTTCTGCAAGATCTGCATGGATGACGTGCCGACGTCCGACGCGCACCGCGGCAGCCACAGCTGCGCGCACGCATTCTACGCCACCTGCCT] [-] EMBL AK111372 [TTAACCATTTGTAAAACTATTACTCCCAGTAAAACTTTTAGTTACGGTAATTCAGGTTATCACTACATATTTTAGATTGGGCAAAATTTGCTACAGGACACTCAAAAAACATGTAATTGGCTATGAAACATCGCAAAAACGTGACACGGCTGATGGACACTACAAAAATTGTGTAATTGGCTATAGGACACCGGTCGCATTATTTTATTATTTTCGGTTCAAAAGAGGTGAGAATTTTTTCCAAATGACGAGATTGCCCCTGTGCCATCTTCCTTCACCCGAAATCACAAATTTTTTGTAGCTGCCGGCGAGGTAGCTGGCGGTGGTGACCGCGCGCCAGGAGCAGCAGACGGCGCGGAGGCGGACGTGGTTGGAAGGGACGGGAGCTGGAGGAGCACGAGCCCTAGCAGGTCCGCCAAGAGATCCTACCACGGCGGCGATGGCTGTTGCGCTGCCGCCATCCTCCTCCTCCTCGTCGGTGCCGGCGGCAGAGCTTGACAGCGGTAACGCCATCCACGCGTCGAGCGAGGACACAGCAGCTGCAGCTCATGCGGAGACGTCTCCATCCTCCGCTCTCGTCCCCGGCGCCGCCACCACCGAGTGCTCGTCCAGCGTCGGCAAGTGCTCTCCATCCTGCAGCCATGACCCTTGTCGCTAGCGTCGGCAAGTGCTCCTGCTCCTCATCAACTGTGCCGCTGCCCGTCCTCTTCTGCAAGATCTGCATGGATGACGTGCCGACGTCCGACGCGCACCGCGGCAGCCACAGCTGCGCGCACGCATTCTACGCCACCTGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2498#0 TACTGGAGAGAAAAATTAATTAAGCAGCTTCTTCCATTCAGACATAGGTCGATCCATCGC 60 consensus_2498#1 --------TTAACCATTTGTAAAACTATTACTCCCAGTAAAACTT-------TTAGTTAC 45 ** *** * ** * * ** *** * * ** * * * * consensus_2498#0 GATTCTTCCATGGACGTCGACGAGCTGTTG-TTGATAGCAATCAGCCATGGAAACAACGA 119 consensus_2498#1 GGTAATTCAGGTTATCACTACATATTTTAGATTGGGCAAAATTTGCTACAGGA-CACTCA 104 * * *** * * ** * * * *** *** ** * * * ** * consensus_2498#0 AGACGGTAGCGACGGGGTTGTCGGGATATCGGACGAGGTGTACGCCGCGGAGCTCCAGCT 179 consensus_2498#1 AAAAACATGTAATTGGCTA--TGAAACATCGCAAAAACGTGACACGGCTGATGGACA-CT 161 * * * * ** * * * **** * * ** * ** ** ** ** consensus_2498#0 CCAAGAGTTGATCATGTCGTCCGCCATGGCGGCCACCGCTGCGGCGGCGGCAGATCAGCT 239 consensus_2498#1 ACAAAAATTG----TGTAATTGGCTATAG--GACACCGGT----------CGCATTATTT 205 *** * *** *** * ** ** * * ***** * * ** * * consensus_2498#0 TGACAGCGGTAGCGCCGTCCACGCGTCGAGCGAGGACGCAGCAGCTGCAGCTCATGCGAA 299 consensus_2498#1 TATTA------------TTTTCGGTTCAAAAGAGGTGAGAATTTTT----TCCAAATGAC 249 * * * ** ** * **** * * ** ** consensus_2498#0 GACGTCTCCATCCTCCGCTCTCGTCCCCGCCGCCGAGTGCTCGTCCTCCTCGGCAGCGGC 359 consensus_2498#1 GAGATTGCC--CCTGTGCCATC-TTCCTTCACCCGAAATCACAAATTTTTTG-TAGCTGC 305 ** * ** *** ** ** * ** * **** * * * * * *** ** consensus_2498#0 CATGACCCTTGTCGCCAGCGTCGTCAAGTGCTCCTGCTCCTCGTCAGCTATGGCACCGTC 419 consensus_2498#1 CG---GCGAGGTAGCTGGCGGTGGTGACCGCGCGCCAGGAGCAGCAGACGGCGCGGAGGC 362 * * ** ** *** * * ** * * *** ** * * consensus_2498#0 GGCCACCACCACGTCGTTCCTCTTCTGCAAGATCTGCATGGACGACGTGCCGGCGTCCGA 479 consensus_2498#1 GGACGTGGTTGGAAGGGACGGGAGCTGGAGGAGCACGAGCCCTAGCAGGTCCGCCAAGAG 422 ** * * * *** * ** * * * * * ** consensus_2498#0 CGCGCACCGCGGCAGCCACGGCTGC-GCGCACGCCTTCTGCGCCGCCTGCCTCGCCGGCC 538 consensus_2498#1 ATCCTACCACGGCGGCGATGGCTGTTGCGC-TGCCGCCATCCTCCTCCTCCTCGTCGGTG 481 * *** **** ** * ***** **** *** * * * * ***** *** consensus_2498#0 ACATCGCCGCTAAGCTCCACTCCGGCGGCGGCGTCTACTGCCCCGAGGATGGCTGCGCCA 598 consensus_2498#1 CCG--GCGGCAGAGCTTGACAGCGGTAACGCCATCCAC-GCGTCGAGCGAGGACACAGCA 538 * ** ** **** ** *** ** * ** ** ** **** ** * ** consensus_2498#0 GC-GCGGTCGACCCGGAGCTCTGCCAACCCATCCTCCCAGAGGACAACTTCGAGCGGTGG 657 consensus_2498#1 GCTGCAGCTCATGCGGAGACGTCTCCATCCTCCGCTCTCG-------TCCCCGGCGCCGC 591 ** ** * * ***** * * * ** * * * * *** * consensus_2498#0 TGCGCCGCGCTGTGCCGGGCCATGGTGCTCGGAGGCCGCCACGTGTACTGCCCGTTCACG 717 consensus_2498#1 --CACCACCGAGTGCTCGTCCAGCGT---CGGCAAGTGCTCTCCATCCTGC--AGCCATG 644 * ** * **** * *** ** *** ** * **** ** * consensus_2498#0 GACTGCGCAGAGATCATCGCCGACGAGCGGGGCGGCGACAGCGACGGCCAGCCGACGGAG 777 consensus_2498#1 ACCCTTGTCG---CTAGCGTCGGCAAGTGCTCCTGCT-CCTCATCAACTGTGCCGCTGCC 700 * * * * ** ** * ** * * ** * * * * * * * consensus_2498#0 TGCCCGGCGTGCCGGAGGCGGTTCTGCGAGCGGTGCGGCGTGGCGTGGCACGGAG-GCGT 836 consensus_2498#1 CGTCC--TCTTCTGCAAG-ATCTGCATGGATGACGTGCCGACGTCCGACGCGCACCGCGG 757 * ** * * * * * * * * * * ** * * * ** * *** consensus_2498#0 GAGCTGCGGC-GAGTACGGGGAGCTGGCGGTGGGGGACAGGGGGGAGGGGGACCTGGCGG 895 consensus_2498#1 CAGCCACAGCTGCGCGCACGCATTCTACGCCACCTGCCT--------------------- 796 *** * ** * * * * * ** * * consensus_2498#0 TGGTGGAGATGGCCAAGGGGAGCAGGTGGCGGCGGTGCCCGCGGTGCGAGTTCTTCGTGG 955 consensus_2498#1 ------------------------------------------------------------ consensus_2498#0 ACAGGTACGAAGGCTGCTCGCACATCACCTGCAGGTGCGGGCTGGAGTTCTGCTACGGGT 1015 consensus_2498#1 ------------------------------------------------------------ consensus_2498#0 GTGGCCAGGAATGGGGGCCTACTGGTCATTCCTCGTGTCAGCGACCTTGAAACACCTGGA 1075 consensus_2498#1 ------------------------------------------------------------ consensus_2498#0 TGGTCGGGATTCGGATGCTGGACATGCCCCGTCAGTCAAACTATTATAACTAGTGTTATG 1135 consensus_2498#1 ------------------------------------------------------------ consensus_2498#0 TTATCACCTGTTAATCTGCTATCTATCCGAATTTAATTCATCTTAGGTTTAGATCTCGGT 1195 consensus_2498#1 ------------------------------------------------------------ consensus_2498#0 GCCAGCTCTTTACACCTAAATTTGGTATCTAGTAATTATAGTCGTTGAGATAGATAAAAA 1255 consensus_2498#1 ------------------------------------------------------------ consensus_2498#0 ACAAGTGTGCAGTCCAACTATTTTTTACTATTGCTAGTATTGTTAGCTGTTTTCTATCCA 1315 consensus_2498#1 ------------------------------------------------------------ consensus_2498#0 ATTTAATTGGTGGTTTAAGTCATGTATTATTTTTTTTTGAGAATTTATGTCATGTACT 1373 consensus_2498#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||